Wall clock time and date at job start Tue Mar 31 2020 15:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 C 1.53008 * 109.47164 * 119.99418 * 2 1 3 5 5 H 1.08999 * 109.46835 * 294.24485 * 4 2 1 6 6 C 1.52995 * 109.47293 * 174.24040 * 4 2 1 7 7 C 1.53001 * 109.47133 * 175.00039 * 6 4 2 8 8 O 1.42900 * 109.47113 * 179.97438 * 7 6 4 9 9 N 1.46502 * 109.46599 * 54.24362 * 4 2 1 10 10 S 1.65604 * 119.99606 * 231.99140 * 9 4 2 11 11 O 1.42101 * 106.39877 * 180.02562 * 10 9 4 12 12 O 1.42099 * 106.40049 * 312.98062 * 10 9 4 13 13 C 1.76197 * 107.22090 * 66.52028 * 10 9 4 14 14 C 1.38627 * 119.74960 * 268.72000 * 13 10 9 15 15 C 1.37620 * 120.24642 * 179.71938 * 14 13 10 16 16 C 1.40717 * 119.74654 * 0.57756 * 15 14 13 17 17 C 1.41390 * 120.24510 * 179.68097 * 16 15 14 18 18 H 1.08004 * 120.00095 * 157.50886 * 17 16 15 19 19 C 1.39946 * 120.00297 * 337.50752 * 17 16 15 20 20 N 1.30823 * 119.99836 * 332.28973 * 19 17 16 21 21 Si 1.86801 * 120.00005 * 152.28923 * 19 17 16 22 22 H 1.48498 * 109.47246 * 94.98501 * 21 19 17 23 23 H 1.48497 * 109.47055 * 214.98454 * 21 19 17 24 24 H 1.48499 * 109.47146 * 334.98099 * 21 19 17 25 25 C 1.40712 * 119.50985 * 359.69811 * 16 15 14 26 26 C 1.37628 * 119.74463 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47271 * 303.10415 * 1 2 3 28 28 H 1.08998 * 109.46633 * 63.10387 * 1 2 3 29 29 H 1.09000 * 109.47077 * 183.09641 * 1 2 3 30 30 H 1.08999 * 109.47575 * 239.99963 * 2 1 3 31 31 H 1.08995 * 109.47419 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47149 * 299.99565 * 3 2 1 33 33 H 1.09000 * 109.47613 * 59.99428 * 3 2 1 34 34 H 1.09004 * 109.47347 * 55.00065 * 6 4 2 35 35 H 1.08998 * 109.47514 * 295.00269 * 6 4 2 36 36 H 1.08998 * 109.47109 * 300.00479 * 7 6 4 37 37 H 1.08998 * 109.46609 * 60.00053 * 7 6 4 38 38 H 0.96698 * 113.99615 * 179.97438 * 8 7 6 39 39 H 0.96997 * 120.00102 * 51.98557 * 9 4 2 40 40 H 1.07998 * 119.87906 * 359.97438 * 14 13 10 41 41 H 1.08001 * 120.12758 * 180.28074 * 15 14 13 42 42 H 0.96993 * 120.00004 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.13127 * 179.97438 * 25 16 15 44 44 H 1.08003 * 119.87344 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7633 -0.1512 2.1363 6 6 3.5631 -0.8478 1.1791 7 6 4.0850 -1.4559 2.4825 8 8 5.5075 -1.5747 2.4167 9 7 1.4418 -2.0566 1.3207 10 16 0.6788 -2.5491 2.7055 11 8 0.2143 -3.8694 2.4598 12 8 1.5461 -2.2172 3.7811 13 6 -0.7565 -1.5450 2.8957 14 6 -0.6822 -0.3706 3.6285 15 6 -1.7955 0.4243 3.7787 16 6 -3.0154 0.0349 3.1953 17 6 -4.1674 0.8402 3.3487 18 1 -4.9787 0.7628 2.6399 19 6 -4.2565 1.7376 4.4188 20 7 -3.6139 1.4939 5.5320 21 14 -5.2928 3.2834 4.2577 22 1 -6.6456 3.0329 4.8166 23 1 -4.6465 4.3926 5.0040 24 1 -5.4101 3.6536 2.8244 25 6 -3.0804 -1.1621 2.4585 26 6 -1.9529 -1.9386 2.3165 27 1 -0.3634 0.5613 0.8609 28 1 -0.3632 0.4649 -0.9165 29 1 -0.3633 -1.0262 0.0555 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 4.0036 0.1391 1.0367 35 1 3.8361 -1.4915 0.3430 36 1 3.8120 -0.8121 3.3187 37 1 3.6445 -2.4427 2.6249 38 1 5.9077 -1.9534 3.2113 39 1 1.4925 -2.6522 0.5568 40 1 0.2538 -0.0763 4.0798 41 1 -1.7344 1.3412 4.3463 42 1 -3.6754 2.1161 6.2736 43 1 -4.0116 -1.4708 2.0068 44 1 -2.0004 -2.8575 1.7510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228610987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:57 Heat of formation + Delta-G solvation = -156.472603 kcal Electronic energy + Delta-G solvation = -27094.637547 eV Core-core repulsion = 23329.628861 eV Total energy + Delta-G solvation = -3765.008686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.54113 -39.25586 -38.05032 -37.36132 -36.75393 -35.81442 -33.86741 -32.09637 -31.65820 -31.27234 -27.77589 -27.57113 -26.16621 -23.31630 -22.92786 -22.48617 -21.26661 -20.36194 -19.40770 -18.65963 -18.29244 -17.96369 -17.41200 -17.15451 -16.22569 -15.86280 -15.78401 -15.44714 -15.19713 -15.08556 -14.85501 -14.41628 -14.15251 -13.99844 -13.85907 -13.59008 -13.47255 -13.11940 -13.06098 -13.02556 -12.90573 -12.85563 -12.64163 -12.49517 -12.37600 -12.25518 -12.04810 -11.86126 -11.68106 -11.50247 -11.43741 -11.25110 -11.11464 -10.82607 -10.30000 -9.78839 -9.50681 -8.95738 -6.60378 -0.27251 0.54480 1.10026 1.34115 1.41032 1.52782 2.10125 2.25690 2.51749 2.96097 3.22022 3.54542 3.62561 3.89854 4.00983 4.12572 4.25850 4.29558 4.33882 4.38206 4.48939 4.59381 4.72408 4.77439 4.88300 4.90115 4.93716 4.96684 5.09197 5.12585 5.14093 5.21421 5.27673 5.28461 5.34049 5.54448 5.57038 5.63370 5.64176 5.78386 5.94298 6.17702 6.25331 6.50100 6.69799 6.84413 6.85884 8.02392 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.004018 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.310385 B = 6966.722536 C = 7460.771217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.150 4.150 4 C 0.163 3.837 5 H 0.077 0.923 6 C -0.124 4.124 7 C 0.071 3.929 8 O -0.589 6.589 9 N -1.103 6.103 10 S 2.716 3.284 11 O -1.009 7.009 12 O -0.997 6.997 13 C -0.792 4.792 14 C -0.010 4.010 15 C -0.211 4.211 16 C 0.118 3.882 17 C -0.471 4.471 18 H 0.091 0.909 19 C 0.045 3.955 20 N -0.786 5.786 21 Si 0.982 3.018 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.253 1.253 25 C -0.257 4.257 26 C 0.005 3.995 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.394 0.606 39 H 0.424 0.576 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.300 0.700 43 H 0.105 0.895 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.842 1.593 -8.535 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.207 4.207 4 C 0.055 3.945 5 H 0.095 0.905 6 C -0.163 4.163 7 C -0.006 4.006 8 O -0.397 6.397 9 N -0.863 5.863 10 S 2.812 3.188 11 O -1.000 7.000 12 O -0.987 6.987 13 C -0.885 4.885 14 C -0.030 4.030 15 C -0.231 4.231 16 C 0.115 3.885 17 C -0.497 4.497 18 H 0.109 0.891 19 C -0.177 4.177 20 N -0.408 5.408 21 Si 0.801 3.199 22 H -0.183 1.183 23 H -0.187 1.187 24 H -0.177 1.177 25 C -0.278 4.278 26 C -0.014 4.014 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.243 0.757 39 H 0.261 0.739 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.096 1.325 -8.141 13.037 hybrid contribution -1.210 0.466 0.629 1.441 sum 8.887 1.791 -7.512 11.773 Atomic orbital electron populations 1.21844 0.95423 1.01922 1.01354 1.21369 0.95428 0.96890 0.97431 1.21911 1.01839 0.94728 1.02256 1.20833 0.91968 0.81692 0.99967 0.90524 1.21934 0.93739 1.03208 0.97421 1.22243 0.80497 0.99620 0.98272 1.86343 1.20598 1.87138 1.45629 1.55409 1.72035 1.25245 1.33579 1.00511 0.73153 0.72291 0.72810 1.93461 1.82722 1.37920 1.85852 1.93467 1.65936 1.85246 1.54017 1.29455 1.16930 1.17262 1.24846 1.20314 0.97502 0.92037 0.93124 1.21115 0.92990 1.01354 1.07666 1.18058 0.93014 0.89789 0.87664 1.20183 1.02931 1.17479 1.09139 0.89096 1.26960 0.96248 1.01587 0.92910 1.69892 1.33194 1.35085 1.02644 0.85192 0.78357 0.76019 0.80355 1.18298 1.18657 1.17679 1.21145 0.98143 0.97554 1.10920 1.20335 0.91571 0.96242 0.93284 0.94371 0.92116 0.92849 0.88658 0.90826 0.91469 0.93477 0.88674 0.89585 0.93810 0.94497 0.75692 0.73925 0.87031 0.88285 0.88872 0.87643 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.86 71.98 0.64 -3.27 16 2 C -0.09 -1.89 2.67 -10.79 -0.03 -1.92 16 3 C -0.15 -2.78 8.97 71.98 0.65 -2.14 16 4 C 0.16 3.89 1.84 44.99 0.08 3.97 16 5 H 0.08 2.11 7.65 -2.39 -0.02 2.09 16 6 C -0.12 -2.65 5.13 30.59 0.16 -2.50 16 7 C 0.07 1.82 6.00 71.98 0.43 2.26 16 8 O -0.59 -13.72 13.66 -148.98 -2.04 -15.75 16 9 N -1.10 -28.75 3.77 -169.38 -0.64 -29.39 16 10 S 2.72 97.51 5.55 -56.49 -0.31 97.20 16 11 O -1.01 -40.91 17.28 -128.00 -2.21 -43.12 16 12 O -1.00 -38.99 14.86 -128.00 -1.90 -40.89 16 13 C -0.79 -32.94 5.82 22.46 0.13 -32.81 16 14 C -0.01 -0.44 9.38 22.22 0.21 -0.23 16 15 C -0.21 -10.41 8.75 22.73 0.20 -10.21 16 16 C 0.12 5.95 5.57 -21.29 -0.12 5.83 16 17 C -0.47 -23.14 8.99 23.46 0.21 -22.93 16 18 H 0.09 4.24 7.98 -2.91 -0.02 4.22 16 19 C 0.04 2.04 4.91 85.26 0.42 2.46 16 20 N -0.79 -37.69 11.48 21.83 0.25 -37.44 16 21 Si 0.98 33.83 29.64 68.60 2.03 35.86 16 22 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 23 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 24 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 25 C -0.26 -12.00 9.80 22.73 0.22 -11.78 16 26 C 0.01 0.23 9.49 22.22 0.21 0.45 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.46 7.35 -2.39 -0.02 1.45 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.13 6.49 -2.39 -0.02 1.11 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.80 6.37 -2.39 -0.02 1.79 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 37 H 0.04 1.02 6.70 -2.39 -0.02 1.00 16 38 H 0.39 6.07 9.12 -74.06 -0.68 5.39 16 39 H 0.42 8.80 8.96 -96.74 -0.87 7.93 16 40 H 0.11 4.60 7.57 -2.91 -0.02 4.58 16 41 H 0.10 5.02 6.40 -2.91 -0.02 5.00 16 42 H 0.30 12.74 8.30 -92.71 -0.77 11.97 16 43 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 44 H 0.12 4.59 7.62 -2.91 -0.02 4.56 16 Total: -1.00 -63.33 369.27 -1.93 -65.26 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.52 Total: 41.08 kcal Atomic # 6 Polarization: -76.22 SS G_CDS: 3.41 Total: -72.81 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -0.39 Total: -66.83 kcal Atomic # 8 Polarization: -93.62 SS G_CDS: -6.15 Total: -99.76 kcal Atomic # 14 Polarization: 33.83 SS G_CDS: 2.03 Total: 35.86 kcal Atomic # 16 Polarization: 97.51 SS G_CDS: -0.31 Total: 97.20 kcal Total: -63.33 -1.93 -65.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228610987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.216 kcal (2) G-P(sol) polarization free energy of solvation -63.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds