Wall clock time and date at job start Tue Mar 31 2020 14:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47090 * 2 1 4 4 C 1.53002 * 109.46905 * 239.99836 * 2 1 3 5 5 C 1.53002 * 109.47181 * 120.00074 * 2 1 3 6 6 C 1.53002 * 109.47299 * 60.00180 * 5 2 1 7 7 S 1.81392 * 109.47314 * 180.02562 * 6 5 2 8 8 O 1.42091 * 110.54566 * 73.26501 * 7 6 5 9 9 O 1.42103 * 110.54267 * 296.51517 * 7 6 5 10 10 N 1.65600 * 104.45151 * 184.89353 * 7 6 5 11 11 C 1.39678 * 119.99777 * 62.85787 * 10 7 6 12 12 C 1.39001 * 120.03768 * 74.93553 * 11 10 7 13 13 C 1.38147 * 120.06009 * 180.02562 * 12 11 10 14 14 C 1.38176 * 120.14615 * 359.72287 * 13 12 11 15 15 C 1.38912 * 120.07101 * 0.55051 * 14 13 12 16 16 O 1.35748 * 120.02797 * 179.72005 * 15 14 13 17 17 C 1.34833 * 117.00595 * 174.27026 * 16 15 14 18 18 H 1.08012 * 119.99291 * 5.07726 * 17 16 15 19 19 C 1.38646 * 120.00705 * 185.06938 * 17 16 15 20 20 N 1.31562 * 120.00250 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99942 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47248 * 89.99549 * 21 19 17 23 23 H 1.48502 * 109.47335 * 209.99604 * 21 19 17 24 24 H 1.48504 * 109.46982 * 329.99587 * 21 19 17 25 25 C 1.38746 * 120.04197 * 254.95191 * 11 10 7 26 26 H 1.09000 * 109.47012 * 299.99537 * 1 2 3 27 27 H 1.08997 * 109.47208 * 60.00220 * 1 2 3 28 28 H 1.09005 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47498 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47243 * 300.00248 * 3 2 1 31 31 H 1.09005 * 109.47155 * 60.00031 * 3 2 1 32 32 H 1.08991 * 109.47459 * 299.99857 * 4 2 1 33 33 H 1.09003 * 109.46834 * 60.00115 * 4 2 1 34 34 H 1.09002 * 109.46851 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46782 * 299.99860 * 5 2 1 36 36 H 1.09005 * 109.47094 * 179.97438 * 5 2 1 37 37 H 1.09000 * 109.46918 * 59.99597 * 6 5 2 38 38 H 1.09003 * 109.46756 * 300.00405 * 6 5 2 39 39 H 0.96997 * 120.00025 * 242.85896 * 10 7 6 40 40 H 1.08007 * 119.97344 * 359.97438 * 12 11 10 41 41 H 1.08007 * 119.92970 * 179.97438 * 13 12 11 42 42 H 1.07997 * 119.96447 * 180.29764 * 14 13 12 43 43 H 0.96998 * 120.00133 * 180.02562 * 20 19 17 44 44 H 1.08005 * 120.06738 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2492 7 16 2.1341 -3.0187 2.7307 8 8 1.4401 -2.5666 3.8852 9 8 3.5526 -3.1024 2.7146 10 7 1.6305 -4.5845 2.5385 11 6 2.1043 -5.3438 1.4661 12 6 3.4007 -5.8449 1.4874 13 6 3.8700 -6.5955 0.4269 14 6 3.0512 -6.8555 -0.6553 15 6 1.7566 -6.3528 -0.6853 16 8 0.9548 -6.6040 -1.7515 17 6 -0.3254 -6.1896 -1.6659 18 1 -0.6499 -5.6113 -0.8133 19 6 -1.2252 -6.5054 -2.6724 20 7 -2.4744 -6.1014 -2.5886 21 14 -0.6641 -7.5059 -4.1467 22 1 -0.8531 -8.9516 -3.8648 23 1 -1.4654 -7.1248 -5.3375 24 1 0.7724 -7.2365 -4.4098 25 6 1.2817 -5.5986 0.3783 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 1.6767 -0.2074 2.1392 36 1 3.1301 -0.7217 1.2490 37 1 1.8934 -2.6776 0.3592 38 1 0.4401 -2.1638 1.2492 39 1 1.0065 -4.9743 3.1705 40 1 4.0421 -5.6465 2.3335 41 1 4.8779 -6.9834 0.4455 42 1 3.4195 -7.4466 -1.4807 43 1 -3.1040 -6.3227 -3.2925 44 1 0.2742 -5.2099 0.3589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232512347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:35 Heat of formation + Delta-G solvation = -90.561011 kcal Electronic energy + Delta-G solvation = -26599.300346 eV Core-core repulsion = 22837.149800 eV Total energy + Delta-G solvation = -3762.150545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.44752 -38.16955 -37.33007 -36.88059 -35.88013 -34.31205 -32.45221 -31.34684 -29.45890 -28.56350 -27.39044 -27.30574 -25.34261 -24.24220 -22.07837 -21.48748 -19.38224 -18.82491 -18.06446 -17.98494 -17.53747 -16.47719 -16.08849 -15.44059 -15.29988 -14.79789 -14.75940 -14.54648 -13.98371 -13.96615 -13.91908 -13.84486 -13.31088 -12.80133 -12.60920 -12.45972 -12.31097 -12.10742 -12.09926 -11.99370 -11.93142 -11.77229 -11.47973 -11.34570 -11.33423 -11.19667 -11.08027 -10.85463 -10.71093 -10.68798 -10.38992 -10.31983 -9.69827 -9.59171 -8.98321 -8.32923 -7.55763 -6.52997 -4.21084 0.29063 1.77666 2.09343 2.75643 3.14442 3.18818 3.32168 3.76781 4.13890 4.22343 4.30043 4.42265 4.62239 4.63712 4.70459 4.96726 4.97924 5.06388 5.35241 5.41707 5.43746 5.50282 5.52840 5.56604 5.71014 5.74255 5.77365 5.78349 5.86030 5.87655 5.93872 5.99976 6.05974 6.16678 6.30564 6.34960 6.35993 6.49909 6.89386 6.96747 7.04896 7.15268 7.47513 7.65062 7.89948 8.81829 9.41834 10.54146 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.004678 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.626890 B = 5984.159323 C = 7527.411121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.143 4.143 4 C -0.150 4.150 5 C -0.098 4.098 6 C -0.630 4.630 7 S 2.606 3.394 8 O -0.965 6.965 9 O -0.951 6.951 10 N -1.062 6.062 11 C 0.156 3.844 12 C -0.184 4.184 13 C -0.073 4.073 14 C -0.181 4.181 15 C 0.162 3.838 16 O -0.213 6.213 17 C -0.393 4.393 18 H 0.106 0.894 19 C 0.066 3.934 20 N -0.876 5.876 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.221 4.221 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.421 0.579 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.280 0.720 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 8.986 5.322 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.201 4.201 4 C -0.207 4.207 5 C -0.137 4.137 6 C -0.760 4.760 7 S 2.702 3.298 8 O -0.956 6.956 9 O -0.940 6.940 10 N -0.817 5.817 11 C 0.062 3.938 12 C -0.206 4.206 13 C -0.092 4.092 14 C -0.200 4.200 15 C 0.109 3.891 16 O -0.118 6.118 17 C -0.469 4.469 18 H 0.124 0.876 19 C -0.138 4.138 20 N -0.513 5.513 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.243 4.243 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.258 0.742 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.473 9.307 5.659 13.800 hybrid contribution -0.842 -0.641 -0.959 1.428 sum 7.631 8.666 4.699 12.467 Atomic orbital electron populations 1.21984 0.94221 1.02620 1.01791 1.20442 0.96053 0.95068 0.94536 1.21898 1.01068 0.95195 1.01898 1.21985 1.01012 1.01139 0.96536 1.21390 1.01369 0.91204 0.99786 1.30671 1.13513 1.08840 1.22950 1.05167 0.75035 0.73386 0.76224 1.93582 1.75550 1.80509 1.45921 1.93590 1.28635 1.84910 1.86908 1.53035 1.62205 1.29610 1.36831 1.16999 0.93049 0.96649 0.87112 1.21044 0.95879 1.03000 1.00685 1.20609 0.98604 0.97216 0.92723 1.20383 0.92853 1.06072 1.00725 1.18912 0.90670 0.92908 0.86617 1.83605 1.22256 1.71350 1.34572 1.20727 0.81317 1.34872 1.09947 0.87649 1.24458 0.94006 0.96820 0.98529 1.69639 1.02687 1.44342 1.34661 0.86196 0.79814 0.80242 0.80760 1.19813 1.20754 1.18280 1.21471 1.01978 1.06087 0.94743 0.92613 0.92399 0.91779 0.92505 0.92362 0.92588 0.91599 0.92448 0.92522 0.90665 0.90230 0.83923 0.84325 0.74189 0.85994 0.86026 0.86062 0.90935 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.12 37.16 0.30 -1.30 16 2 C -0.06 -0.63 0.80 -154.51 -0.12 -0.75 16 3 C -0.14 -1.28 8.47 37.15 0.31 -0.96 16 4 C -0.15 -1.71 8.12 37.16 0.30 -1.41 16 5 C -0.10 -1.09 4.28 -26.73 -0.11 -1.20 16 6 C -0.63 -7.71 5.27 37.16 0.20 -7.52 16 7 S 2.61 36.61 5.43 -107.50 -0.58 36.03 16 8 O -0.97 -15.44 18.08 -57.54 -1.04 -16.48 16 9 O -0.95 -15.66 16.93 -57.54 -0.97 -16.63 16 10 N -1.06 -15.25 5.60 32.40 0.18 -15.07 16 11 C 0.16 2.61 5.66 -83.81 -0.47 2.14 16 12 C -0.18 -3.02 9.24 -39.33 -0.36 -3.39 16 13 C -0.07 -1.14 10.03 -39.64 -0.40 -1.54 16 14 C -0.18 -3.23 9.99 -39.35 -0.39 -3.62 16 15 C 0.16 3.39 6.64 -39.14 -0.26 3.13 16 16 O -0.21 -5.18 8.58 0.05 0.00 -5.18 16 17 C -0.39 -10.29 9.94 30.88 0.31 -9.98 16 18 H 0.11 2.79 5.43 -52.48 -0.29 2.50 16 19 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16 20 N -0.88 -24.03 13.96 55.48 0.77 -23.26 16 21 Si 0.90 20.59 28.62 -169.99 -4.86 15.73 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.22 -4.24 9.09 -39.20 -0.36 -4.59 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.85 6.43 -51.93 -0.33 0.51 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.14 1.82 6.41 -51.92 -0.33 1.49 16 38 H 0.14 1.56 6.43 -51.92 -0.33 1.23 16 39 H 0.42 5.26 8.92 -34.47 -0.31 4.95 16 40 H 0.12 1.90 7.78 -52.48 -0.41 1.49 16 41 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 43 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.14 2.77 5.64 -52.48 -0.30 2.47 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -31.11 370.84 -8.49 -39.60 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.42 Total: 9.04 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -1.16 Total: -29.36 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.96 Total: -38.33 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.01 Total: -38.29 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.86 Total: 15.73 kcal Atomic # 16 Polarization: 36.61 SS G_CDS: -0.58 Total: 36.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.11 -8.49 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232512347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.964 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds