Wall clock time and date at job start Tue Mar 31 2020 14:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47090 * 2 1 4 4 C 1.53002 * 109.46905 * 239.99836 * 2 1 3 5 5 C 1.53002 * 109.47181 * 120.00074 * 2 1 3 6 6 C 1.53002 * 109.47299 * 60.00180 * 5 2 1 7 7 S 1.81392 * 109.47314 * 180.02562 * 6 5 2 8 8 O 1.42091 * 110.54566 * 73.26501 * 7 6 5 9 9 O 1.42103 * 110.54267 * 296.51517 * 7 6 5 10 10 N 1.65600 * 104.45151 * 184.89353 * 7 6 5 11 11 C 1.39678 * 119.99777 * 62.85787 * 10 7 6 12 12 C 1.39001 * 120.03768 * 74.93553 * 11 10 7 13 13 C 1.38147 * 120.06009 * 180.02562 * 12 11 10 14 14 C 1.38176 * 120.14615 * 359.72287 * 13 12 11 15 15 C 1.38912 * 120.07101 * 0.55051 * 14 13 12 16 16 O 1.35748 * 120.02797 * 179.72005 * 15 14 13 17 17 C 1.34833 * 117.00595 * 174.27026 * 16 15 14 18 18 H 1.08012 * 119.99291 * 5.07726 * 17 16 15 19 19 C 1.38646 * 120.00705 * 185.06938 * 17 16 15 20 20 N 1.31562 * 120.00250 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99942 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47248 * 89.99549 * 21 19 17 23 23 H 1.48502 * 109.47335 * 209.99604 * 21 19 17 24 24 H 1.48504 * 109.46982 * 329.99587 * 21 19 17 25 25 C 1.38746 * 120.04197 * 254.95191 * 11 10 7 26 26 H 1.09000 * 109.47012 * 299.99537 * 1 2 3 27 27 H 1.08997 * 109.47208 * 60.00220 * 1 2 3 28 28 H 1.09005 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47498 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47243 * 300.00248 * 3 2 1 31 31 H 1.09005 * 109.47155 * 60.00031 * 3 2 1 32 32 H 1.08991 * 109.47459 * 299.99857 * 4 2 1 33 33 H 1.09003 * 109.46834 * 60.00115 * 4 2 1 34 34 H 1.09002 * 109.46851 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46782 * 299.99860 * 5 2 1 36 36 H 1.09005 * 109.47094 * 179.97438 * 5 2 1 37 37 H 1.09000 * 109.46918 * 59.99597 * 6 5 2 38 38 H 1.09003 * 109.46756 * 300.00405 * 6 5 2 39 39 H 0.96997 * 120.00025 * 242.85896 * 10 7 6 40 40 H 1.08007 * 119.97344 * 359.97438 * 12 11 10 41 41 H 1.08007 * 119.92970 * 179.97438 * 13 12 11 42 42 H 1.07997 * 119.96447 * 180.29764 * 14 13 12 43 43 H 0.96998 * 120.00133 * 180.02562 * 20 19 17 44 44 H 1.08005 * 120.06738 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2492 7 16 2.1341 -3.0187 2.7307 8 8 1.4401 -2.5666 3.8852 9 8 3.5526 -3.1024 2.7146 10 7 1.6305 -4.5845 2.5385 11 6 2.1043 -5.3438 1.4661 12 6 3.4007 -5.8449 1.4874 13 6 3.8700 -6.5955 0.4269 14 6 3.0512 -6.8555 -0.6553 15 6 1.7566 -6.3528 -0.6853 16 8 0.9548 -6.6040 -1.7515 17 6 -0.3254 -6.1896 -1.6659 18 1 -0.6499 -5.6113 -0.8133 19 6 -1.2252 -6.5054 -2.6724 20 7 -2.4744 -6.1014 -2.5886 21 14 -0.6641 -7.5059 -4.1467 22 1 -0.8531 -8.9516 -3.8648 23 1 -1.4654 -7.1248 -5.3375 24 1 0.7724 -7.2365 -4.4098 25 6 1.2817 -5.5986 0.3783 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 1.6767 -0.2074 2.1392 36 1 3.1301 -0.7217 1.2490 37 1 1.8934 -2.6776 0.3592 38 1 0.4401 -2.1638 1.2492 39 1 1.0065 -4.9743 3.1705 40 1 4.0421 -5.6465 2.3335 41 1 4.8779 -6.9834 0.4455 42 1 3.4195 -7.4466 -1.4807 43 1 -3.1040 -6.3227 -3.2925 44 1 0.2742 -5.2099 0.3589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232512347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:34 Heat of formation + Delta-G solvation = -110.515677 kcal Electronic energy + Delta-G solvation = -26600.165645 eV Core-core repulsion = 22837.149800 eV Total energy + Delta-G solvation = -3763.015845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00123 -39.04090 -38.84945 -38.17690 -37.13396 -35.67621 -34.36412 -32.29592 -30.95095 -30.01233 -28.20410 -28.17671 -27.18276 -25.18327 -23.51716 -23.00768 -20.60266 -19.85833 -19.74789 -19.46023 -18.73420 -17.70016 -17.41274 -16.86823 -16.67271 -16.20730 -15.81839 -15.69084 -15.61861 -15.52244 -14.86276 -14.81367 -14.74129 -14.31964 -14.12669 -13.76442 -13.70593 -13.33623 -13.20760 -13.03207 -12.88757 -12.87575 -12.71179 -12.64151 -12.60447 -12.46987 -12.27941 -12.25661 -12.03967 -11.58016 -11.53919 -11.47068 -11.38888 -10.95718 -10.84001 -9.72405 -9.14119 -8.48237 -6.20874 -0.87858 0.36711 0.62055 1.34648 1.37342 1.53466 1.56581 2.29131 2.61694 2.72389 3.00258 3.13678 3.15512 3.46716 3.70901 3.76468 4.00090 4.10294 4.16284 4.21462 4.35294 4.44276 4.48890 4.56576 4.62612 4.65668 4.73243 4.81021 4.90684 4.91952 4.92700 5.05501 5.07530 5.16433 5.17670 5.35591 5.37326 5.43294 5.49328 5.54766 5.59383 5.75977 5.79866 5.98784 6.22960 6.86620 7.58939 8.62542 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.004678 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.626890 B = 5984.159323 C = 7527.411121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.152 4.152 5 C -0.106 4.106 6 C -0.621 4.621 7 S 2.622 3.378 8 O -0.982 6.982 9 O -0.971 6.971 10 N -1.061 6.061 11 C 0.160 3.840 12 C -0.176 4.176 13 C -0.060 4.060 14 C -0.177 4.177 15 C 0.129 3.871 16 O -0.239 6.239 17 C -0.396 4.396 18 H 0.086 0.914 19 C 0.014 3.986 20 N -0.921 5.921 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.272 1.272 24 H -0.259 1.259 25 C -0.227 4.227 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.429 0.571 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.138 0.862 43 H 0.283 0.717 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 9.262 5.753 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.060 4.060 3 C -0.199 4.199 4 C -0.209 4.209 5 C -0.145 4.145 6 C -0.752 4.752 7 S 2.719 3.281 8 O -0.973 6.973 9 O -0.961 6.961 10 N -0.816 5.816 11 C 0.066 3.934 12 C -0.197 4.197 13 C -0.078 4.078 14 C -0.197 4.197 15 C 0.079 3.921 16 O -0.146 6.146 17 C -0.472 4.472 18 H 0.104 0.896 19 C -0.185 4.185 20 N -0.561 5.561 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.183 1.183 25 C -0.249 4.249 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.268 0.732 40 H 0.157 0.843 41 H 0.183 0.817 42 H 0.156 0.844 43 H 0.093 0.907 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.877 9.571 6.146 15.738 hybrid contribution -1.381 -0.653 -0.866 1.756 sum 9.497 8.918 5.280 14.057 Atomic orbital electron populations 1.22023 0.94621 1.01766 1.02569 1.20444 0.95745 0.96105 0.93673 1.21888 1.01531 0.93781 1.02689 1.22012 1.01474 1.00056 0.97397 1.21561 1.02030 0.90186 1.00748 1.30596 1.13961 1.09648 1.21034 1.04682 0.74253 0.72929 0.76224 1.93558 1.75748 1.80636 1.47367 1.93554 1.29989 1.85166 1.87430 1.52999 1.62426 1.29871 1.36322 1.16986 0.93097 0.96488 0.86850 1.21440 0.95473 1.01549 1.01248 1.21078 1.00019 0.95669 0.91028 1.20714 0.91594 1.05432 1.01930 1.19451 0.91667 0.94242 0.86723 1.83557 1.21505 1.73159 1.36408 1.20682 0.82569 1.34534 1.09451 0.89622 1.25197 0.94083 0.98105 1.01144 1.69722 1.03766 1.46634 1.35982 0.85304 0.79219 0.78879 0.77916 1.19318 1.19731 1.18331 1.21437 1.01710 1.06287 0.95472 0.91443 0.92084 0.93443 0.91807 0.91847 0.91594 0.93720 0.92081 0.91808 0.89232 0.89382 0.84495 0.83675 0.73226 0.84294 0.81664 0.84398 0.90707 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.12 71.98 0.58 -2.61 16 2 C -0.06 -1.16 0.80 -52.18 -0.04 -1.20 16 3 C -0.14 -2.23 8.47 71.98 0.61 -1.62 16 4 C -0.15 -3.41 8.12 71.98 0.58 -2.82 16 5 C -0.11 -2.19 4.28 30.60 0.13 -2.06 16 6 C -0.62 -14.91 5.27 71.98 0.38 -14.53 16 7 S 2.62 70.86 5.43 -56.49 -0.31 70.55 16 8 O -0.98 -30.40 18.08 -127.65 -2.31 -32.71 16 9 O -0.97 -30.28 16.93 -127.65 -2.16 -32.44 16 10 N -1.06 -29.58 5.60 -51.41 -0.29 -29.87 16 11 C 0.16 5.20 5.66 38.20 0.22 5.41 16 12 C -0.18 -5.24 9.24 22.43 0.21 -5.03 16 13 C -0.06 -1.65 10.03 22.23 0.22 -1.42 16 14 C -0.18 -5.96 9.99 22.42 0.22 -5.74 16 15 C 0.13 5.41 6.64 22.56 0.15 5.56 16 16 O -0.24 -11.87 8.58 -22.75 -0.20 -12.07 16 17 C -0.40 -21.60 9.94 67.92 0.68 -20.93 16 18 H 0.09 4.84 5.43 -2.90 -0.02 4.82 16 19 C 0.01 0.74 5.49 84.83 0.47 1.21 16 20 N -0.92 -52.45 13.96 21.61 0.30 -52.15 16 21 Si 0.96 43.11 28.62 68.60 1.96 45.07 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 25 C -0.23 -8.84 9.09 22.52 0.20 -8.63 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.13 6.43 -2.38 -0.02 1.12 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.04 1.17 6.43 -2.39 -0.02 1.16 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.14 3.52 6.41 -2.39 -0.02 3.50 16 38 H 0.15 3.31 6.43 -2.39 -0.02 3.29 16 39 H 0.43 10.45 8.92 -96.75 -0.86 9.59 16 40 H 0.14 3.78 7.78 -2.91 -0.02 3.76 16 41 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 Total: -1.00 -67.56 370.84 1.77 -65.79 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.15 Total: 32.23 kcal Atomic # 6 Polarization: -59.03 SS G_CDS: 4.61 Total: -54.42 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: 0.01 Total: -82.01 kcal Atomic # 8 Polarization: -72.55 SS G_CDS: -4.66 Total: -77.22 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.96 Total: 45.07 kcal Atomic # 16 Polarization: 70.86 SS G_CDS: -0.31 Total: 70.55 kcal Total: -67.56 1.77 -65.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232512347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.729 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds