Wall clock time and date at job start Tue Mar 31 2020 14:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47684 * 2 1 4 4 C 1.32993 * 120.00355 * 120.65235 * 3 2 1 5 5 C 1.50696 * 120.00219 * 185.23754 * 4 3 2 6 6 C 1.47098 * 119.99669 * 5.23981 * 4 3 2 7 7 O 1.21619 * 120.00138 * 263.55251 * 6 4 3 8 8 N 1.34780 * 120.00091 * 83.55268 * 6 4 3 9 9 C 1.47594 * 122.43041 * 3.89676 * 8 6 4 10 10 S 1.83815 * 102.75825 * 204.72544 * 9 8 6 11 11 C 1.84207 * 93.99273 * 326.84030 * 10 9 8 12 12 C 1.45504 * 122.43028 * 184.17431 * 8 6 4 13 13 H 1.09004 * 108.75312 * 57.96161 * 12 8 6 14 14 C 1.50703 * 108.75570 * 299.73965 * 12 8 6 15 15 O 1.20820 * 119.99856 * 359.97438 * 14 12 8 16 16 O 1.34225 * 119.99860 * 179.97438 * 14 12 8 17 17 C 1.45198 * 117.00330 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47529 * 180.02562 * 17 16 14 19 19 C 1.50694 * 109.47062 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00465 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00002 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99963 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99938 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47000 * 90.00198 * 23 21 19 25 25 H 1.48493 * 109.47243 * 210.00377 * 23 21 19 26 26 H 1.48503 * 109.47395 * 330.00619 * 23 21 19 27 27 H 1.09000 * 109.47213 * 59.99439 * 1 2 3 28 28 H 1.09004 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47029 * 299.99955 * 1 2 3 30 30 H 1.09002 * 109.47029 * 240.00045 * 2 1 3 31 31 H 1.09000 * 109.47213 * 120.00561 * 2 1 3 32 32 H 1.08005 * 119.99781 * 300.65901 * 3 2 1 33 33 H 1.08997 * 109.47106 * 84.98562 * 5 4 3 34 34 H 1.09006 * 109.47076 * 324.98399 * 5 4 3 35 35 H 1.08995 * 109.47298 * 204.99071 * 5 4 3 36 36 H 1.09001 * 110.77735 * 323.09235 * 9 8 6 37 37 H 1.09005 * 110.77920 * 86.51453 * 9 8 6 38 38 H 1.09002 * 111.05352 * 274.08422 * 11 10 9 39 39 H 1.09008 * 111.05022 * 150.11352 * 11 10 9 40 40 H 1.09003 * 109.47168 * 300.00074 * 17 16 14 41 41 H 1.09004 * 109.47023 * 59.99571 * 17 16 14 42 42 H 1.09004 * 109.46768 * 299.99595 * 18 17 16 43 43 H 1.08992 * 109.47043 * 59.99784 * 18 17 16 44 44 H 0.96997 * 119.99847 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8078 1.8520 0.9908 5 6 3.2133 3.3019 1.0538 6 6 3.2695 0.9134 2.0251 7 8 2.6686 0.8261 3.0789 8 7 4.3584 0.1503 1.8050 9 6 5.1763 0.2721 0.5825 10 16 5.9580 -1.3863 0.4502 11 6 6.0629 -1.6245 2.2738 12 6 4.8095 -0.8574 2.7527 13 1 4.0024 -1.5717 2.9154 14 6 5.1290 -0.1828 4.0619 15 8 4.9902 1.0120 4.1755 16 8 5.5677 -0.9094 5.1017 17 6 5.8563 -0.1932 6.3314 18 6 6.3414 -1.1805 7.3949 19 6 6.6403 -0.4372 8.6712 20 1 6.4989 0.6325 8.7190 21 6 7.0953 -1.1225 9.7777 22 7 7.3566 -0.4737 10.8915 23 14 7.3406 -2.9725 9.6949 24 1 8.7261 -3.2686 9.2501 25 1 7.1154 -3.5623 11.0389 26 1 6.3753 -3.5571 8.7296 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7628 2.0889 -0.8046 33 1 2.4333 3.8760 1.5539 34 1 3.3542 3.6841 0.0427 35 1 4.1459 3.3945 1.6103 36 1 4.5476 0.4737 -0.2849 37 1 5.9346 1.0463 0.7000 38 1 6.9725 -1.1779 2.6754 39 1 5.9991 -2.6809 2.5350 40 1 6.6317 0.5500 6.1456 41 1 4.9525 0.3047 6.6825 42 1 5.5663 -1.9240 7.5808 43 1 7.2452 -1.6779 7.0435 44 1 7.6764 -0.9559 11.6700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255562585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:28 Heat of formation + Delta-G solvation = -99.971396 kcal Electronic energy + Delta-G solvation = -26141.030652 eV Core-core repulsion = 22378.472041 eV Total energy + Delta-G solvation = -3762.558610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06001 -39.60057 -36.88651 -36.09943 -35.89142 -33.36628 -32.72870 -31.71309 -30.61569 -27.83443 -27.34975 -25.71434 -24.88638 -23.18815 -22.35837 -20.76283 -20.46362 -18.94211 -17.95709 -17.65009 -17.02394 -16.62133 -16.13088 -15.96460 -15.60532 -15.54848 -14.82525 -14.40641 -14.21704 -14.18238 -13.98048 -13.59589 -13.40607 -13.30125 -13.15864 -12.99996 -12.66871 -12.62353 -12.48232 -12.37414 -12.24813 -11.54893 -11.43921 -11.35197 -11.31886 -11.20242 -10.71906 -10.52651 -10.22717 -9.98055 -9.95026 -9.73166 -9.37634 -9.30275 -9.19660 -8.63728 -8.32277 -6.14072 -4.15464 1.13947 1.34156 1.49617 2.09701 2.35977 2.48836 3.06234 3.26418 3.34102 3.38191 3.76222 4.15105 4.37213 4.40825 4.48606 4.56154 4.67752 4.78341 4.92588 4.95922 5.04090 5.07103 5.10496 5.17479 5.19306 5.30594 5.35658 5.49286 5.61570 5.67891 5.75903 5.85088 5.92229 5.96446 5.99976 6.21513 6.42168 6.71457 6.76621 7.14831 7.19642 7.60428 7.78291 8.04743 8.38424 8.87622 9.45148 10.98556 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.002944 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.574644 B = 9508.760816 C =10135.739728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.114 4.114 4 C -0.158 4.158 5 C -0.105 4.105 6 C 0.580 3.420 7 O -0.502 6.502 8 N -0.602 5.602 9 C 0.154 3.846 10 S -0.255 6.255 11 C -0.058 4.058 12 C 0.142 3.858 13 H 0.124 0.876 14 C 0.448 3.552 15 O -0.487 6.487 16 O -0.359 6.359 17 C 0.085 3.915 18 C -0.008 4.008 19 C -0.528 4.528 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.882 3.118 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.024 0.976 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.938 0.241 -28.913 29.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.133 4.133 4 C -0.161 4.161 5 C -0.162 4.162 6 C 0.368 3.632 7 O -0.374 6.374 8 N -0.340 5.340 9 C -0.079 4.079 10 S -0.028 6.028 11 C -0.207 4.207 12 C 0.035 3.965 13 H 0.142 0.858 14 C 0.286 3.714 15 O -0.373 6.373 16 O -0.275 6.275 17 C 0.012 3.988 18 C -0.045 4.045 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.187 1.187 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.927 -0.136 -29.007 30.071 hybrid contribution -0.025 -0.007 1.185 1.185 sum -7.951 -0.143 -27.822 28.937 Atomic orbital electron populations 1.21661 0.94196 1.02127 1.02213 1.20771 0.97006 0.93703 1.02825 1.23396 0.95586 0.97761 0.96518 1.21434 1.02457 0.96597 0.95573 1.20690 1.02568 0.90239 1.02745 1.18282 0.78618 0.79211 0.87101 1.90895 1.55162 1.65760 1.25613 1.48254 1.28231 1.38693 1.18806 1.24232 0.96847 0.96543 0.90293 1.88349 1.81003 1.23133 1.10309 1.24504 0.98782 1.05617 0.91757 1.20760 0.99233 0.90612 0.85891 0.85829 1.23403 0.74972 0.86691 0.86326 1.90658 1.47315 1.16037 1.83323 1.86446 1.75603 1.43178 1.22263 1.23415 1.00468 0.95854 0.79032 1.19621 0.96792 0.95443 0.92673 1.20834 1.45596 0.96305 0.93852 0.90683 1.24941 0.94422 0.98638 0.95010 1.69896 1.44966 1.36300 1.02300 0.86742 0.79177 0.85604 0.77641 1.20044 1.21148 1.18731 0.92421 0.92190 0.92307 0.90364 0.91537 0.85331 0.90428 0.90808 0.91327 0.86103 0.88271 0.87000 0.84269 0.91778 0.91592 0.95331 0.95806 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.11 -0.82 6.21 -27.89 -0.17 -0.99 16 3 C -0.11 -0.85 8.70 -36.13 -0.31 -1.16 16 4 C -0.16 -1.56 4.44 -102.85 -0.46 -2.02 16 5 C -0.11 -0.89 10.02 36.00 0.36 -0.53 16 6 C 0.58 7.89 4.24 -12.67 -0.05 7.84 16 7 O -0.50 -9.23 15.56 -15.37 -0.24 -9.47 16 8 N -0.60 -7.03 2.76 -170.69 -0.47 -7.50 16 9 C 0.15 1.28 7.23 60.45 0.44 1.72 16 10 S -0.25 -2.23 23.42 -107.50 -2.52 -4.75 16 11 C -0.06 -0.55 6.91 37.97 0.26 -0.29 16 12 C 0.14 1.78 2.99 -68.80 -0.21 1.57 16 13 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.45 7.74 6.53 36.01 0.23 7.97 16 15 O -0.49 -9.92 14.22 -25.66 -0.36 -10.28 16 16 O -0.36 -6.74 10.06 -39.24 -0.39 -7.13 16 17 C 0.08 1.85 5.40 37.16 0.20 2.05 16 18 C -0.01 -0.19 4.42 -27.89 -0.12 -0.31 16 19 C -0.53 -15.12 9.66 -34.44 -0.33 -15.45 16 20 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 23 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16 32 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 35 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.12 0.76 6.99 -51.93 -0.36 0.40 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.11 1.09 7.84 -51.93 -0.41 0.69 16 39 H 0.14 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 41 H 0.07 1.50 8.13 -51.93 -0.42 1.08 16 42 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 43 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -35.15 378.18 -9.02 -44.17 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.94 Total: -2.48 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 0.11 Total: 1.74 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.30 Total: -34.21 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.00 Total: -26.88 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.52 Total: -4.75 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.15 -9.02 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255562585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.799 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds