Wall clock time and date at job start Tue Mar 31 2020 14:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47684 * 2 1 4 4 C 1.32993 * 120.00355 * 120.65235 * 3 2 1 5 5 C 1.50696 * 120.00219 * 185.23754 * 4 3 2 6 6 C 1.47098 * 119.99669 * 5.23981 * 4 3 2 7 7 O 1.21619 * 120.00138 * 263.55251 * 6 4 3 8 8 N 1.34780 * 120.00091 * 83.55268 * 6 4 3 9 9 C 1.47594 * 122.43041 * 3.89676 * 8 6 4 10 10 S 1.83815 * 102.75825 * 204.72544 * 9 8 6 11 11 C 1.84207 * 93.99273 * 326.84030 * 10 9 8 12 12 C 1.45504 * 122.43028 * 184.17431 * 8 6 4 13 13 H 1.09004 * 108.75312 * 57.96161 * 12 8 6 14 14 C 1.50703 * 108.75570 * 299.73965 * 12 8 6 15 15 O 1.20820 * 119.99856 * 359.97438 * 14 12 8 16 16 O 1.34225 * 119.99860 * 179.97438 * 14 12 8 17 17 C 1.45198 * 117.00330 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47529 * 180.02562 * 17 16 14 19 19 C 1.50694 * 109.47062 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00465 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00002 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99963 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99938 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47000 * 90.00198 * 23 21 19 25 25 H 1.48493 * 109.47243 * 210.00377 * 23 21 19 26 26 H 1.48503 * 109.47395 * 330.00619 * 23 21 19 27 27 H 1.09000 * 109.47213 * 59.99439 * 1 2 3 28 28 H 1.09004 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47029 * 299.99955 * 1 2 3 30 30 H 1.09002 * 109.47029 * 240.00045 * 2 1 3 31 31 H 1.09000 * 109.47213 * 120.00561 * 2 1 3 32 32 H 1.08005 * 119.99781 * 300.65901 * 3 2 1 33 33 H 1.08997 * 109.47106 * 84.98562 * 5 4 3 34 34 H 1.09006 * 109.47076 * 324.98399 * 5 4 3 35 35 H 1.08995 * 109.47298 * 204.99071 * 5 4 3 36 36 H 1.09001 * 110.77735 * 323.09235 * 9 8 6 37 37 H 1.09005 * 110.77920 * 86.51453 * 9 8 6 38 38 H 1.09002 * 111.05352 * 274.08422 * 11 10 9 39 39 H 1.09008 * 111.05022 * 150.11352 * 11 10 9 40 40 H 1.09003 * 109.47168 * 300.00074 * 17 16 14 41 41 H 1.09004 * 109.47023 * 59.99571 * 17 16 14 42 42 H 1.09004 * 109.46768 * 299.99595 * 18 17 16 43 43 H 1.08992 * 109.47043 * 59.99784 * 18 17 16 44 44 H 0.96997 * 119.99847 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8078 1.8520 0.9908 5 6 3.2133 3.3019 1.0538 6 6 3.2695 0.9134 2.0251 7 8 2.6686 0.8261 3.0789 8 7 4.3584 0.1503 1.8050 9 6 5.1763 0.2721 0.5825 10 16 5.9580 -1.3863 0.4502 11 6 6.0629 -1.6245 2.2738 12 6 4.8095 -0.8574 2.7527 13 1 4.0024 -1.5717 2.9154 14 6 5.1290 -0.1828 4.0619 15 8 4.9902 1.0120 4.1755 16 8 5.5677 -0.9094 5.1017 17 6 5.8563 -0.1932 6.3314 18 6 6.3414 -1.1805 7.3949 19 6 6.6403 -0.4372 8.6712 20 1 6.4989 0.6325 8.7190 21 6 7.0953 -1.1225 9.7777 22 7 7.3566 -0.4737 10.8915 23 14 7.3406 -2.9725 9.6949 24 1 8.7261 -3.2686 9.2501 25 1 7.1154 -3.5623 11.0389 26 1 6.3753 -3.5571 8.7296 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7628 2.0889 -0.8046 33 1 2.4333 3.8760 1.5539 34 1 3.3542 3.6841 0.0427 35 1 4.1459 3.3945 1.6103 36 1 4.5476 0.4737 -0.2849 37 1 5.9346 1.0463 0.7000 38 1 6.9725 -1.1779 2.6754 39 1 5.9991 -2.6809 2.5350 40 1 6.6317 0.5500 6.1456 41 1 4.9525 0.3047 6.6825 42 1 5.5663 -1.9240 7.5808 43 1 7.2452 -1.6779 7.0435 44 1 7.6764 -0.9559 11.6700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255562585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:27 Heat of formation + Delta-G solvation = -121.048237 kcal Electronic energy + Delta-G solvation = -26141.944612 eV Core-core repulsion = 22378.472041 eV Total energy + Delta-G solvation = -3763.472571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23897 -40.87001 -38.09709 -37.30910 -36.84751 -35.45063 -33.50266 -32.96579 -32.20887 -28.67027 -27.96392 -27.45542 -25.97893 -24.29285 -23.14698 -22.62034 -21.63180 -19.91585 -19.38849 -18.78462 -18.60035 -17.93066 -17.43797 -17.16430 -16.57277 -16.44042 -16.27471 -15.66710 -15.52244 -15.10652 -14.94476 -14.72351 -14.59289 -14.34469 -14.21680 -13.98736 -13.79248 -13.52513 -13.39088 -13.29270 -13.20439 -13.10072 -12.96105 -12.57591 -12.50967 -12.19429 -12.04312 -11.91331 -11.84160 -11.60493 -11.52555 -11.40120 -11.06453 -10.83848 -10.23196 -9.96261 -8.99885 -8.37124 -6.46264 0.42608 0.65197 0.72162 1.00990 1.07067 1.36586 1.39321 1.51892 1.55359 1.80233 2.32695 2.88421 2.97610 3.34826 3.40544 3.71911 3.79270 3.95068 4.07745 4.09265 4.11572 4.16115 4.28679 4.35922 4.38098 4.44954 4.52629 4.53987 4.70432 4.71027 4.79305 4.94915 4.97670 5.05259 5.15578 5.23736 5.25483 5.38741 5.40777 5.47933 5.57294 5.85327 6.11882 6.52964 6.59659 6.83596 7.18842 8.79257 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.002944 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.574644 B = 9508.760816 C =10135.739728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.082 4.082 4 C -0.188 4.188 5 C -0.099 4.099 6 C 0.577 3.423 7 O -0.564 6.564 8 N -0.601 5.601 9 C 0.151 3.849 10 S -0.235 6.235 11 C -0.057 4.057 12 C 0.147 3.853 13 H 0.132 0.868 14 C 0.443 3.557 15 O -0.522 6.522 16 O -0.352 6.352 17 C 0.097 3.903 18 C 0.000 4.000 19 C -0.546 4.546 20 H 0.030 0.970 21 C 0.011 3.989 22 N -0.945 5.945 23 Si 0.957 3.043 24 H -0.259 1.259 25 H -0.281 1.281 26 H -0.243 1.243 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.166 0.834 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.147 0.853 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.163 0.837 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.042 0.958 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 -1.859 -32.714 33.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.101 4.101 4 C -0.191 4.191 5 C -0.156 4.156 6 C 0.367 3.633 7 O -0.442 6.442 8 N -0.337 5.337 9 C -0.081 4.081 10 S -0.008 6.008 11 C -0.205 4.205 12 C 0.039 3.961 13 H 0.149 0.851 14 C 0.284 3.716 15 O -0.410 6.410 16 O -0.268 6.268 17 C 0.024 3.976 18 C -0.037 4.037 19 C -0.584 4.584 20 H 0.049 0.951 21 C -0.187 4.187 22 N -0.584 5.584 23 Si 0.779 3.221 24 H -0.183 1.183 25 H -0.207 1.207 26 H -0.166 1.166 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.183 0.817 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.165 0.835 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.181 0.819 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.875 -2.238 -32.875 33.879 hybrid contribution -0.090 0.736 2.293 2.409 sum -7.965 -1.502 -30.582 31.638 Atomic orbital electron populations 1.21652 0.93723 1.02457 1.02228 1.20846 0.97377 0.93892 1.02587 1.23729 0.92540 0.97914 0.95875 1.21400 1.05250 0.96538 0.95914 1.20675 1.01044 0.89444 1.04474 1.19028 0.78184 0.79091 0.87018 1.90851 1.57217 1.67731 1.28374 1.48403 1.27925 1.38010 1.19406 1.24492 0.97069 0.96858 0.89698 1.88323 1.80854 1.22890 1.08708 1.24544 0.96851 1.06403 0.92738 1.20956 1.00903 0.90591 0.83612 0.85095 1.24520 0.73419 0.86559 0.87123 1.90647 1.48678 1.17805 1.83909 1.86432 1.75994 1.42716 1.21682 1.22933 0.99239 0.95212 0.80248 1.19445 0.97645 0.95333 0.91286 1.21103 1.46003 0.94856 0.96429 0.95115 1.26001 0.93692 1.04810 0.94196 1.70049 1.46085 1.38922 1.03383 0.85558 0.80242 0.77991 0.78311 1.18310 1.20665 1.16633 0.90213 0.91843 0.94401 0.87870 0.94378 0.81697 0.91358 0.87168 0.93542 0.83534 0.87546 0.87220 0.81950 0.92374 0.93666 0.94708 0.93994 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 71.98 0.71 -1.04 16 2 C -0.11 -1.43 6.21 29.85 0.19 -1.24 16 3 C -0.08 -0.99 8.70 24.52 0.21 -0.78 16 4 C -0.19 -3.51 4.44 -18.71 -0.08 -3.59 16 5 C -0.10 -1.58 10.02 71.23 0.71 -0.86 16 6 C 0.58 15.90 4.24 86.57 0.37 16.27 16 7 O -0.56 -21.92 15.56 15.64 0.24 -21.68 16 8 N -0.60 -13.66 2.76 -812.18 -2.24 -15.90 16 9 C 0.15 2.18 7.23 127.56 0.92 3.10 16 10 S -0.23 -3.46 23.42 -56.49 -1.32 -4.78 16 11 C -0.06 -0.97 6.91 72.51 0.50 -0.47 16 12 C 0.15 3.59 2.99 44.96 0.13 3.72 16 13 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16 14 C 0.44 15.65 6.53 71.24 0.46 16.11 16 15 O -0.52 -22.30 14.22 28.60 0.41 -21.90 16 16 O -0.35 -13.30 10.06 -51.37 -0.52 -13.82 16 17 C 0.10 4.37 5.40 71.98 0.39 4.76 16 18 C 0.00 0.02 4.42 29.85 0.13 0.15 16 19 C -0.55 -32.31 9.66 25.60 0.25 -32.06 16 20 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 21 C 0.01 0.65 5.47 84.66 0.46 1.11 16 22 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 23 Si 0.96 43.50 27.47 68.60 1.88 45.38 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.73 6.30 -2.39 -0.02 0.72 16 32 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 0.87 8.11 -2.38 -0.02 0.85 16 35 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 36 H 0.15 1.35 6.99 -2.39 -0.02 1.33 16 37 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.11 1.96 7.84 -2.39 -0.02 1.94 16 39 H 0.16 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 41 H 0.04 2.19 8.13 -2.39 -0.02 2.17 16 42 H 0.03 1.64 7.20 -2.38 -0.02 1.62 16 43 H 0.04 1.88 7.57 -2.39 -0.02 1.87 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -81.34 378.18 5.04 -76.30 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.93 Total: 10.43 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.36 Total: 5.18 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.94 Total: -75.12 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: 0.13 Total: -57.39 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.32 Total: -4.78 kcal Total: -81.34 5.04 -76.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255562585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.748 kcal (2) G-P(sol) polarization free energy of solvation -81.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds