Wall clock time and date at job start Tue Mar 31 2020 15:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 O 1.42899 * 109.46993 * 180.02562 * 3 2 1 5 5 C 1.35898 * 117.00435 * 179.97438 * 4 3 2 6 6 C 1.38728 * 120.05828 * 179.97438 * 5 4 3 7 7 C 1.38156 * 119.94197 * 180.30024 * 6 5 4 8 8 C 1.38265 * 120.05117 * 359.41964 * 7 6 5 9 9 S 1.76204 * 119.94077 * 180.30105 * 8 7 6 10 10 O 1.42105 * 106.40017 * 23.83756 * 9 8 7 11 11 O 1.42098 * 106.40537 * 156.76080 * 9 8 7 12 12 N 1.65608 * 107.22006 * 270.30331 * 9 8 7 13 13 C 1.36938 * 119.99370 * 275.24275 * 12 9 8 14 14 H 1.07993 * 120.00188 * 326.62961 * 13 12 9 15 15 C 1.38821 * 119.99558 * 146.63565 * 13 12 9 16 16 N 1.31616 * 120.00025 * 335.92543 * 15 13 12 17 17 Si 1.86796 * 119.99834 * 155.92663 * 15 13 12 18 18 H 1.48504 * 109.47109 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47295 * 119.99676 * 17 15 13 20 20 H 1.48500 * 109.47245 * 239.99981 * 17 15 13 21 21 C 1.46497 * 119.99884 * 95.23737 * 12 9 8 22 22 C 1.52996 * 109.47035 * 95.00499 * 21 12 9 23 23 C 1.53000 * 109.47371 * 179.97438 * 22 21 12 24 24 C 1.38255 * 120.11462 * 0.60472 * 8 7 6 25 25 C 1.38144 * 120.05600 * 359.67530 * 24 8 7 26 26 H 1.09000 * 109.47233 * 60.00268 * 1 2 3 27 27 H 1.09006 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47387 * 299.99757 * 1 2 3 29 29 H 1.08995 * 109.46991 * 239.99936 * 2 1 3 30 30 H 1.08992 * 109.47191 * 120.00025 * 2 1 3 31 31 H 1.08995 * 109.47414 * 60.00195 * 3 2 1 32 32 H 1.09003 * 109.47364 * 299.99455 * 3 2 1 33 33 H 1.08000 * 120.02814 * 0.02562 * 6 5 4 34 34 H 1.07993 * 119.96886 * 179.70126 * 7 6 5 35 35 H 0.96998 * 120.00182 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46880 * 215.00183 * 21 12 9 37 37 H 1.08994 * 109.47365 * 335.00108 * 21 12 9 38 38 H 1.09003 * 109.47029 * 299.99593 * 22 21 12 39 39 H 1.09003 * 109.47450 * 59.99425 * 22 21 12 40 40 H 1.09003 * 109.46826 * 299.99857 * 23 22 21 41 41 H 1.08994 * 109.47083 * 59.99576 * 23 22 21 42 42 H 1.09001 * 109.47172 * 180.02562 * 23 22 21 43 43 H 1.08010 * 119.97377 * 179.69924 * 24 8 7 44 44 H 1.08000 * 120.02748 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 5.4712 2.7274 -0.0013 7 6 6.0960 3.9596 0.0043 8 6 5.3417 5.1184 -0.0021 9 16 6.1416 6.6884 -0.0029 10 8 7.4372 6.4783 -0.5476 11 8 5.2101 7.6131 -0.5473 12 7 6.3648 7.1257 1.5788 13 6 5.3578 7.7504 2.2649 14 1 4.6878 8.4215 1.7482 15 6 5.1983 7.5210 3.6247 16 7 5.6529 6.4090 4.1623 17 14 4.3383 8.7906 4.6914 18 1 3.9246 9.9438 3.8522 19 1 3.1393 8.1793 5.3192 20 1 5.2677 9.2583 5.7510 21 6 7.6394 6.8441 2.2437 22 6 8.5430 8.0757 2.1567 23 6 9.8740 7.7820 2.8517 24 6 3.9610 5.0473 -0.0015 25 6 3.3315 3.8176 -0.0013 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.0608 1.8225 -0.0013 34 1 7.1743 4.0176 0.0092 35 1 5.5412 6.2486 5.1124 36 1 7.4571 6.6004 3.2904 37 1 8.1263 6.0010 1.7538 38 1 8.7253 8.3195 1.1101 39 1 8.0560 8.9190 2.6466 40 1 9.6913 7.5385 3.8984 41 1 10.3611 6.9387 2.3622 42 1 10.5175 8.6596 2.7902 43 1 3.3740 5.9540 -0.0016 44 1 2.2529 3.7627 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271541795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:11 Heat of formation + Delta-G solvation = -99.948961 kcal Electronic energy + Delta-G solvation = -26391.195879 eV Core-core repulsion = 22628.638242 eV Total energy + Delta-G solvation = -3762.557637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.86738 -37.22154 -36.31121 -35.79783 -34.39522 -34.05686 -32.74628 -31.04830 -30.63294 -29.60728 -26.66119 -26.01384 -23.76859 -22.84221 -22.17758 -21.17706 -20.65012 -18.49109 -18.07806 -17.37041 -16.53974 -16.34065 -16.10520 -15.75454 -14.87690 -14.45798 -14.28641 -14.24622 -13.99499 -13.76098 -13.37488 -13.12713 -12.96583 -12.75730 -12.42430 -12.39828 -12.21898 -11.87155 -11.79094 -11.64080 -11.39491 -11.31706 -11.08616 -10.97072 -10.72982 -10.69947 -10.64965 -10.55902 -10.49118 -10.40599 -10.14865 -9.80405 -9.65224 -9.24908 -8.59449 -8.09878 -7.83397 -6.58974 -4.13824 1.50493 1.79176 1.89318 3.06637 3.15550 3.20396 3.22978 3.92854 4.04909 4.52854 4.67318 4.67991 4.73211 5.00062 5.09524 5.10790 5.15775 5.21279 5.29350 5.41452 5.60837 5.68889 5.75774 5.80569 5.82402 5.82810 5.86904 5.99090 6.02444 6.12211 6.27300 6.38788 6.46876 6.54636 6.62831 6.65253 6.77677 6.84904 6.90549 7.12481 7.20531 7.29208 7.58401 7.61693 8.27416 8.68574 9.16127 10.35396 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.004008 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.599188 B = 6984.329930 C = 7994.660839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.056 3.944 4 O -0.319 6.319 5 C 0.155 3.845 6 C -0.178 4.178 7 C 0.008 3.992 8 C -0.682 4.682 9 S 2.543 3.457 10 O -1.006 7.006 11 O -0.988 6.988 12 N -0.802 5.802 13 C -0.248 4.248 14 H 0.110 0.890 15 C 0.038 3.962 16 N -0.822 5.822 17 Si 0.919 3.081 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.276 1.276 21 C 0.122 3.878 22 C -0.135 4.135 23 C -0.144 4.144 24 C 0.019 3.981 25 C -0.233 4.233 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.274 0.726 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.135 0.865 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 -7.786 -1.397 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.019 4.019 4 O -0.232 6.232 5 C 0.110 3.890 6 C -0.197 4.197 7 C -0.011 4.011 8 C -0.761 4.761 9 S 2.643 3.357 10 O -0.995 6.995 11 O -0.978 6.978 12 N -0.626 5.626 13 C -0.395 4.395 14 H 0.127 0.873 15 C -0.175 4.175 16 N -0.460 5.460 17 Si 0.744 3.256 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.201 1.201 21 C -0.004 4.004 22 C -0.175 4.175 23 C -0.202 4.202 24 C 0.000 4.000 25 C -0.252 4.252 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.153 0.847 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.973 -7.788 -2.250 9.027 hybrid contribution -1.034 -0.252 0.856 1.366 sum -5.007 -8.039 -1.394 9.573 Atomic orbital electron populations 1.21692 0.94324 1.02369 1.02316 1.21476 0.95979 0.94983 1.03594 1.22867 0.78792 0.98572 1.01657 1.86012 1.21137 1.27577 1.88521 1.19074 0.92379 0.83669 0.93909 1.20434 0.91235 0.98654 1.09365 1.20645 0.99614 0.90430 0.90460 1.32096 1.04780 1.24798 1.14432 1.10537 0.72869 0.74216 0.78030 1.93333 1.39672 1.86576 1.79948 1.93348 1.64233 1.60909 1.79285 1.53704 1.16693 1.61088 1.31090 1.19821 1.11140 1.17099 0.91478 0.87279 1.25741 0.96678 0.96098 0.99009 1.69996 1.40833 1.21478 1.13698 0.85975 0.78955 0.80958 0.79710 1.18445 1.20472 1.20115 1.21413 0.81826 0.95078 1.02104 1.21872 0.95093 1.00153 1.00376 1.21671 0.97312 1.00740 1.00508 1.20657 0.93151 0.97238 0.88978 1.21259 0.99598 0.92762 1.11599 0.92371 0.91827 0.92271 0.90949 0.90844 0.91855 0.92055 0.85439 0.84680 0.91553 0.87434 0.92818 0.92633 0.91589 0.92948 0.93091 0.93474 0.84699 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.14 6.30 -26.73 -0.17 -1.31 16 3 C 0.06 0.67 4.74 37.16 0.18 0.85 16 4 O -0.32 -4.97 10.14 -19.42 -0.20 -5.17 16 5 C 0.16 2.77 6.69 -39.22 -0.26 2.50 16 6 C -0.18 -3.23 9.99 -39.43 -0.39 -3.63 16 7 C 0.01 0.15 9.52 -39.60 -0.38 -0.22 16 8 C -0.68 -14.95 5.97 -39.57 -0.24 -15.19 16 9 S 2.54 60.61 5.61 -107.50 -0.60 60.01 16 10 O -1.01 -24.89 16.08 -57.17 -0.92 -25.80 16 11 O -0.99 -25.52 16.27 -57.17 -0.93 -26.45 16 12 N -0.80 -19.02 2.85 -59.91 -0.17 -19.19 16 13 C -0.25 -6.02 9.17 -15.06 -0.14 -6.15 16 14 H 0.11 2.67 7.45 -52.49 -0.39 2.28 16 15 C 0.04 0.89 4.97 -17.43 -0.09 0.80 16 16 N -0.82 -19.59 11.29 55.49 0.63 -18.97 16 17 Si 0.92 18.18 29.62 -169.99 -5.03 13.15 16 18 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 21 C 0.12 2.67 4.97 -4.05 -0.02 2.65 16 22 C -0.14 -2.63 6.23 -26.73 -0.17 -2.80 16 23 C -0.14 -2.30 9.91 37.16 0.37 -1.93 16 24 C 0.02 0.39 9.51 -39.61 -0.38 0.01 16 25 C -0.23 -4.18 9.04 -39.43 -0.36 -4.54 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 32 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 33 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 34 H 0.14 2.54 7.62 -52.49 -0.40 2.14 16 35 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 36 H 0.11 2.45 5.31 -51.93 -0.28 2.17 16 37 H 0.05 1.13 7.46 -51.93 -0.39 0.74 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.14 2.69 7.61 -52.48 -0.40 2.29 16 44 H 0.12 1.85 6.30 -52.49 -0.33 1.52 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -29.24 374.97 -10.01 -39.25 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.77 Total: 7.21 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -1.67 Total: -29.68 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.46 Total: -38.16 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -2.05 Total: -57.42 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 60.61 SS G_CDS: -0.60 Total: 60.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.24 -10.01 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271541795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.701 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds