Wall clock time and date at job start Tue Mar 31 2020 15:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 O 1.42899 * 109.46993 * 180.02562 * 3 2 1 5 5 C 1.35898 * 117.00435 * 179.97438 * 4 3 2 6 6 C 1.38728 * 120.05828 * 179.97438 * 5 4 3 7 7 C 1.38156 * 119.94197 * 180.30024 * 6 5 4 8 8 C 1.38265 * 120.05117 * 359.41964 * 7 6 5 9 9 S 1.76204 * 119.94077 * 180.30105 * 8 7 6 10 10 O 1.42105 * 106.40017 * 23.83756 * 9 8 7 11 11 O 1.42098 * 106.40537 * 156.76080 * 9 8 7 12 12 N 1.65608 * 107.22006 * 270.30331 * 9 8 7 13 13 C 1.36938 * 119.99370 * 275.24275 * 12 9 8 14 14 H 1.07993 * 120.00188 * 326.62961 * 13 12 9 15 15 C 1.38821 * 119.99558 * 146.63565 * 13 12 9 16 16 N 1.31616 * 120.00025 * 335.92543 * 15 13 12 17 17 Si 1.86796 * 119.99834 * 155.92663 * 15 13 12 18 18 H 1.48504 * 109.47109 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47295 * 119.99676 * 17 15 13 20 20 H 1.48500 * 109.47245 * 239.99981 * 17 15 13 21 21 C 1.46497 * 119.99884 * 95.23737 * 12 9 8 22 22 C 1.52996 * 109.47035 * 95.00499 * 21 12 9 23 23 C 1.53000 * 109.47371 * 179.97438 * 22 21 12 24 24 C 1.38255 * 120.11462 * 0.60472 * 8 7 6 25 25 C 1.38144 * 120.05600 * 359.67530 * 24 8 7 26 26 H 1.09000 * 109.47233 * 60.00268 * 1 2 3 27 27 H 1.09006 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47387 * 299.99757 * 1 2 3 29 29 H 1.08995 * 109.46991 * 239.99936 * 2 1 3 30 30 H 1.08992 * 109.47191 * 120.00025 * 2 1 3 31 31 H 1.08995 * 109.47414 * 60.00195 * 3 2 1 32 32 H 1.09003 * 109.47364 * 299.99455 * 3 2 1 33 33 H 1.08000 * 120.02814 * 0.02562 * 6 5 4 34 34 H 1.07993 * 119.96886 * 179.70126 * 7 6 5 35 35 H 0.96998 * 120.00182 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46880 * 215.00183 * 21 12 9 37 37 H 1.08994 * 109.47365 * 335.00108 * 21 12 9 38 38 H 1.09003 * 109.47029 * 299.99593 * 22 21 12 39 39 H 1.09003 * 109.47450 * 59.99425 * 22 21 12 40 40 H 1.09003 * 109.46826 * 299.99857 * 23 22 21 41 41 H 1.08994 * 109.47083 * 59.99576 * 23 22 21 42 42 H 1.09001 * 109.47172 * 180.02562 * 23 22 21 43 43 H 1.08010 * 119.97377 * 179.69924 * 24 8 7 44 44 H 1.08000 * 120.02748 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 5.4712 2.7274 -0.0013 7 6 6.0960 3.9596 0.0043 8 6 5.3417 5.1184 -0.0021 9 16 6.1416 6.6884 -0.0029 10 8 7.4372 6.4783 -0.5476 11 8 5.2101 7.6131 -0.5473 12 7 6.3648 7.1257 1.5788 13 6 5.3578 7.7504 2.2649 14 1 4.6878 8.4215 1.7482 15 6 5.1983 7.5210 3.6247 16 7 5.6529 6.4090 4.1623 17 14 4.3383 8.7906 4.6914 18 1 3.9246 9.9438 3.8522 19 1 3.1393 8.1793 5.3192 20 1 5.2677 9.2583 5.7510 21 6 7.6394 6.8441 2.2437 22 6 8.5430 8.0757 2.1567 23 6 9.8740 7.7820 2.8517 24 6 3.9610 5.0473 -0.0015 25 6 3.3315 3.8176 -0.0013 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.0608 1.8225 -0.0013 34 1 7.1743 4.0176 0.0092 35 1 5.5412 6.2486 5.1124 36 1 7.4571 6.6004 3.2904 37 1 8.1263 6.0010 1.7538 38 1 8.7253 8.3195 1.1101 39 1 8.0560 8.9190 2.6466 40 1 9.6913 7.5385 3.8984 41 1 10.3611 6.9387 2.3622 42 1 10.5175 8.6596 2.7902 43 1 3.3740 5.9540 -0.0016 44 1 2.2529 3.7627 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271541795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:10 Heat of formation + Delta-G solvation = -116.448905 kcal Electronic energy + Delta-G solvation = -26391.911370 eV Core-core repulsion = 22628.638242 eV Total energy + Delta-G solvation = -3763.273129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.19304 -38.57531 -38.06352 -37.73163 -36.35073 -34.88253 -34.39495 -32.76049 -32.11088 -31.03799 -27.70289 -27.57206 -25.46935 -24.12133 -23.59739 -22.26371 -22.15353 -20.29889 -19.49431 -19.03498 -18.32237 -17.86976 -17.33458 -17.17343 -16.62562 -16.13455 -15.71942 -15.50040 -15.20404 -15.14113 -14.95228 -14.58851 -14.47360 -14.16320 -13.65713 -13.57660 -13.50763 -13.38245 -13.30298 -12.99810 -12.82230 -12.68681 -12.62684 -12.40320 -12.32909 -12.22305 -12.17694 -12.03215 -11.81983 -11.80370 -11.60559 -11.51424 -11.34908 -10.99318 -10.09590 -9.70185 -9.47712 -8.36735 -5.99954 -0.10053 0.13743 0.28753 1.48945 1.54479 1.66985 2.04117 2.28346 2.47332 2.77183 2.93366 3.28253 3.62010 3.76854 3.85905 3.89308 4.00050 4.22037 4.25699 4.29371 4.30972 4.39756 4.50371 4.51018 4.57517 4.62144 4.70658 4.77729 4.90810 4.98346 5.07862 5.08455 5.14540 5.16666 5.17638 5.25446 5.30145 5.30779 5.32173 5.43212 5.65134 5.67012 5.83340 6.29055 6.44757 6.85974 7.34184 8.58588 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.004008 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.599188 B = 6984.329930 C = 7994.660839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.044 3.956 4 O -0.320 6.320 5 C 0.161 3.839 6 C -0.179 4.179 7 C -0.005 4.005 8 C -0.707 4.707 9 S 2.548 3.452 10 O -1.022 7.022 11 O -1.016 7.016 12 N -0.810 5.810 13 C -0.272 4.272 14 H 0.098 0.902 15 C 0.012 3.988 16 N -0.843 5.843 17 Si 0.978 3.022 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.267 1.267 21 C 0.120 3.880 22 C -0.134 4.134 23 C -0.138 4.138 24 C 0.000 4.000 25 C -0.229 4.229 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.281 0.719 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.130 0.870 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -9.085 -0.506 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.031 4.031 4 O -0.234 6.234 5 C 0.115 3.885 6 C -0.198 4.198 7 C -0.025 4.025 8 C -0.790 4.790 9 S 2.652 3.348 10 O -1.012 7.012 11 O -1.007 7.007 12 N -0.634 5.634 13 C -0.419 4.419 14 H 0.115 0.885 15 C -0.199 4.199 16 N -0.480 5.480 17 Si 0.801 3.199 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.192 1.192 21 C -0.007 4.007 22 C -0.174 4.174 23 C -0.196 4.196 24 C -0.020 4.020 25 C -0.249 4.249 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.148 0.852 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.859 -9.071 -1.357 10.380 hybrid contribution -0.839 -0.025 0.530 0.993 sum -5.698 -9.096 -0.827 10.765 Atomic orbital electron populations 1.21692 0.92653 1.03402 1.02660 1.21500 0.97254 0.93128 1.03705 1.23263 0.76689 1.00697 1.02401 1.86036 1.23352 1.26180 1.87815 1.19190 0.92498 0.84468 0.92351 1.20719 0.92000 0.98824 1.08298 1.20789 0.99963 0.90756 0.90954 1.31740 1.05651 1.24201 1.17374 1.10036 0.72310 0.74466 0.77957 1.93290 1.40488 1.87000 1.80434 1.93293 1.64875 1.62494 1.80000 1.53688 1.17306 1.61578 1.30817 1.19871 1.11923 1.17876 0.92253 0.88474 1.26380 0.96888 0.97375 0.99289 1.70042 1.41211 1.22474 1.14316 0.85099 0.78128 0.78662 0.78061 1.18586 1.19998 1.19225 1.21524 0.81583 0.96228 1.01331 1.21862 0.96547 0.98903 1.00085 1.21634 0.95514 1.02070 1.00365 1.20769 0.92798 0.98376 0.90019 1.21525 1.01258 0.91752 1.10316 0.91865 0.90496 0.92119 0.90661 0.90974 0.91434 0.90936 0.82764 0.84233 0.90910 0.88189 0.92846 0.93828 0.92105 0.92320 0.92476 0.91206 0.85164 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.89 6.30 30.59 0.19 -1.70 16 3 C 0.04 0.93 4.74 71.98 0.34 1.27 16 4 O -0.32 -9.22 10.14 -92.40 -0.94 -10.15 16 5 C 0.16 5.47 6.69 22.51 0.15 5.62 16 6 C -0.18 -6.31 9.99 22.37 0.22 -6.08 16 7 C -0.01 -0.22 9.52 22.26 0.21 -0.01 16 8 C -0.71 -31.67 5.97 22.28 0.13 -31.54 16 9 S 2.55 125.94 5.61 -56.49 -0.32 125.62 16 10 O -1.02 -52.22 16.08 -128.00 -2.06 -54.28 16 11 O -1.02 -54.75 16.27 -128.00 -2.08 -56.83 16 12 N -0.81 -39.57 2.85 -343.47 -0.98 -40.54 16 13 C -0.27 -13.54 9.17 84.04 0.77 -12.76 16 14 H 0.10 4.95 7.45 -2.91 -0.02 4.93 16 15 C 0.01 0.58 4.97 84.86 0.42 1.00 16 16 N -0.84 -40.10 11.29 21.65 0.24 -39.86 16 17 Si 0.98 36.88 29.62 68.60 2.03 38.91 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 21 C 0.12 5.32 4.97 86.38 0.43 5.75 16 22 C -0.13 -5.27 6.23 30.59 0.19 -5.08 16 23 C -0.14 -4.22 9.91 71.98 0.71 -3.50 16 24 C 0.00 -0.01 9.51 22.25 0.21 0.20 16 25 C -0.23 -7.96 9.04 22.37 0.20 -7.75 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.39 7.66 -2.39 -0.02 1.38 16 32 H 0.07 1.39 7.66 -2.39 -0.02 1.38 16 33 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 34 H 0.14 5.33 7.62 -2.91 -0.02 5.31 16 35 H 0.28 12.33 8.31 -92.71 -0.77 11.56 16 36 H 0.10 4.62 5.31 -2.39 -0.01 4.60 16 37 H 0.05 2.31 7.46 -2.39 -0.02 2.30 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.13 5.38 7.61 -2.91 -0.02 5.36 16 44 H 0.16 4.26 6.30 -2.91 -0.02 4.25 16 Total: -1.00 -62.93 374.97 1.79 -61.13 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.98 Total: 31.60 kcal Atomic # 6 Polarization: -60.51 SS G_CDS: 4.91 Total: -55.61 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -0.73 Total: -80.40 kcal Atomic # 8 Polarization: -116.18 SS G_CDS: -5.08 Total: -121.26 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Atomic # 16 Polarization: 125.94 SS G_CDS: -0.32 Total: 125.62 kcal Total: -62.93 1.79 -61.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271541795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.314 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds