Wall clock time and date at job start Tue Mar 31 2020 15:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 119.99509 * 2 1 4 4 N 1.46496 * 109.46916 * 125.00031 * 3 2 1 5 5 C 1.46502 * 119.99960 * 85.00057 * 4 3 2 6 6 C 1.53008 * 109.46999 * 274.99938 * 5 4 3 7 7 C 1.50697 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.34511 * 125.79278 * 90.00315 * 7 6 5 9 9 C 1.41386 * 106.84141 * 180.02562 * 8 7 6 10 10 C 1.34507 * 106.84010 * 0.02562 * 9 8 7 11 11 O 1.34304 * 108.42311 * 359.97438 * 10 9 8 12 12 S 1.65608 * 120.00334 * 265.00013 * 4 3 2 13 13 O 1.42103 * 104.27308 * 26.07251 * 12 4 3 14 14 O 1.42101 * 104.27692 * 153.92500 * 12 4 3 15 15 C 1.81396 * 104.44877 * 270.00004 * 12 4 3 16 16 C 1.53003 * 109.46778 * 179.97438 * 15 12 4 17 17 C 1.53002 * 109.46786 * 179.97438 * 16 15 12 18 18 C 1.50695 * 109.47211 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99817 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00392 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99595 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47518 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47243 * 120.00048 * 22 20 18 25 25 H 1.48500 * 109.47106 * 239.99725 * 22 20 18 26 26 H 1.08009 * 120.00047 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00425 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00096 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47161 * 5.00396 * 3 2 1 30 30 H 1.08993 * 109.47500 * 245.00072 * 3 2 1 31 31 H 1.09001 * 109.46968 * 155.00415 * 5 4 3 32 32 H 1.08995 * 109.47318 * 35.00163 * 5 4 3 33 33 H 1.08994 * 109.46939 * 60.00018 * 6 5 4 34 34 H 1.09003 * 109.47242 * 299.99604 * 6 5 4 35 35 H 1.07999 * 126.58024 * 359.97438 * 8 7 6 36 36 H 1.08004 * 126.57483 * 179.97438 * 9 8 7 37 37 H 1.08004 * 125.79019 * 180.26381 * 10 9 8 38 38 H 1.08992 * 109.47178 * 299.99792 * 15 12 4 39 39 H 1.09003 * 109.46998 * 59.99628 * 15 12 4 40 40 H 1.08992 * 109.47512 * 300.00096 * 16 15 12 41 41 H 1.09004 * 109.46554 * 60.00569 * 16 15 12 42 42 H 1.09005 * 109.47524 * 300.00268 * 17 16 15 43 43 H 1.09003 * 109.46898 * 60.00193 * 17 16 15 44 44 H 0.97001 * 119.99737 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 4.3216 0.7270 1.0023 6 6 4.2309 -0.7708 1.3016 7 6 5.5971 -1.3929 1.1695 8 6 6.5030 -1.5186 2.1558 9 6 7.6344 -2.1540 1.5942 10 6 7.3524 -2.3780 0.2983 11 8 6.1170 -1.9152 0.0466 12 16 2.5441 2.0463 2.5563 13 8 1.1263 1.9509 2.5640 14 8 3.3280 1.3871 3.5413 15 6 3.0649 3.7749 2.3802 16 6 2.6997 4.5493 3.6482 17 6 3.1396 6.0072 3.4999 18 6 2.7805 6.7698 4.7491 19 1 2.2881 6.2650 5.5671 20 6 3.0804 8.1119 4.8477 21 7 3.6803 8.7264 3.8517 22 14 2.6345 9.0573 6.3958 23 1 1.9713 8.1435 7.3602 24 1 3.8676 9.6139 7.0084 25 1 1.7099 10.1665 6.0495 26 1 -0.5401 -0.9354 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3584 2.1317 0.0896 30 1 2.6212 1.4028 -0.9313 31 1 5.0055 1.1978 1.7085 32 1 4.6903 0.8730 -0.0129 33 1 3.5470 -1.2416 0.5955 34 1 3.8623 -0.9168 2.3170 35 1 6.3886 -1.1954 3.1799 36 1 8.5498 -2.4095 2.1073 37 1 8.0064 -2.8540 -0.4174 38 1 4.1433 3.8157 2.2271 39 1 2.5593 4.2213 1.5239 40 1 1.6213 4.5085 3.8010 41 1 3.2052 4.1029 4.5047 42 1 4.2181 6.0476 3.3474 43 1 2.6345 6.4537 2.6434 44 1 3.8917 9.6706 3.9212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272495506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:15 Heat of formation + Delta-G solvation = -47.315563 kcal Electronic energy + Delta-G solvation = -25568.499786 eV Core-core repulsion = 21808.224504 eV Total energy + Delta-G solvation = -3760.275282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.72155 -37.67553 -37.01719 -35.72803 -34.68346 -34.06415 -33.09624 -32.20385 -31.93889 -28.17399 -27.81558 -25.88638 -23.77611 -23.25985 -21.91084 -20.63855 -20.58939 -20.06188 -18.86713 -17.74350 -17.46238 -16.63790 -16.55614 -16.01015 -15.76721 -15.26548 -14.96746 -14.78409 -14.49041 -14.20582 -14.06735 -13.76064 -13.03993 -12.97490 -12.77979 -12.70573 -12.58817 -12.36680 -12.29548 -11.95346 -11.80189 -11.79211 -11.73172 -11.33804 -11.23609 -10.99750 -10.94488 -10.84722 -10.42535 -10.08990 -9.97497 -9.63041 -9.56671 -9.29268 -9.05594 -8.57274 -8.42423 -6.07082 -4.10099 0.37757 1.54228 2.08324 2.45604 2.71588 2.89943 3.28537 3.36136 3.41064 3.97991 4.24404 4.37857 4.41984 4.59589 4.75426 4.82541 4.88029 4.89352 4.96782 5.01184 5.12664 5.15976 5.29239 5.29775 5.39894 5.53412 5.64860 5.69755 5.72917 5.82248 5.85216 5.89271 5.98901 6.22214 6.33455 6.39468 6.42640 6.49263 6.65238 6.85149 6.96892 7.55550 7.65062 7.91061 8.31418 8.96399 9.54780 11.04207 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002832 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.881195 B = 9884.671791 C =11222.265408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.186 4.186 3 C 0.152 3.848 4 N -1.000 6.000 5 C 0.130 3.870 6 C -0.062 4.062 7 C -0.008 4.008 8 C -0.206 4.206 9 C -0.212 4.212 10 C -0.048 4.048 11 O -0.178 6.178 12 S 2.592 3.408 13 O -0.952 6.952 14 O -0.957 6.957 15 C -0.610 4.610 16 C -0.105 4.105 17 C 0.030 3.970 18 C -0.526 4.526 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -21.687 -11.726 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.205 4.205 3 C 0.027 3.973 4 N -0.834 5.834 5 C 0.004 3.996 6 C -0.101 4.101 7 C -0.059 4.059 8 C -0.225 4.225 9 C -0.231 4.231 10 C -0.115 4.115 11 O -0.074 6.074 12 S 2.689 3.311 13 O -0.943 6.943 14 O -0.947 6.947 15 C -0.741 4.741 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.217 0.783 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.533 -21.972 -11.363 24.866 hybrid contribution 0.448 0.971 0.538 1.197 sum 2.981 -21.001 -10.825 23.814 Atomic orbital electron populations 1.23922 0.95908 1.02215 0.98064 1.23318 0.96317 0.98792 1.02085 1.20391 0.91340 0.96177 0.89417 1.57828 1.22919 1.71412 1.31265 1.21235 0.83186 0.91665 1.03487 1.20741 0.89127 0.95292 1.04892 1.22319 0.97331 1.01999 0.84256 1.21748 0.94058 1.05657 1.01008 1.21874 1.00865 1.05456 0.94951 1.23997 0.85386 1.04095 0.98055 1.84008 1.27739 1.59832 1.35824 1.05724 0.74682 0.77728 0.72928 1.93576 1.28866 1.86553 1.85278 1.93563 1.71781 1.72410 1.56986 1.30599 1.12210 1.21835 1.09495 1.21502 1.01305 1.00200 0.91490 1.19068 0.96922 0.87240 0.97560 1.21289 1.38960 0.94442 1.01705 0.92312 1.25023 0.95063 0.97786 0.96541 1.69967 1.41562 1.10582 1.31309 0.86501 0.78207 0.79896 0.83229 1.19585 1.20921 1.20929 0.88488 0.87969 0.87182 0.89394 0.89546 0.89300 0.89868 0.89509 0.87828 0.83069 0.83503 0.78260 0.85473 0.85467 0.91597 0.91607 0.96116 0.96121 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 14.32 29.02 0.42 -1.15 16 2 C -0.19 -1.77 9.45 -36.02 -0.34 -2.11 16 3 C 0.15 1.41 5.72 -5.19 -0.03 1.38 16 4 N -1.00 -10.82 2.73 -115.66 -0.32 -11.13 16 5 C 0.13 1.26 5.26 -4.04 -0.02 1.24 16 6 C -0.06 -0.61 5.85 -27.88 -0.16 -0.78 16 7 C -0.01 -0.09 6.57 -35.63 -0.23 -0.32 16 8 C -0.21 -2.22 10.81 -39.70 -0.43 -2.64 16 9 C -0.21 -1.97 10.91 -39.70 -0.43 -2.40 16 10 C -0.05 -0.40 12.09 29.41 0.36 -0.05 16 11 O -0.18 -1.85 10.65 5.70 0.06 -1.79 16 12 S 2.59 37.51 5.32 -107.50 -0.57 36.94 16 13 O -0.95 -16.08 16.99 -57.54 -0.98 -17.05 16 14 O -0.96 -16.04 16.75 -57.54 -0.96 -17.00 16 15 C -0.61 -9.28 6.18 37.16 0.23 -9.06 16 16 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 17 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 18 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H 0.10 0.80 8.06 -52.48 -0.42 0.37 16 27 H 0.10 0.99 7.84 -52.49 -0.41 0.58 16 28 H 0.11 0.94 6.04 -52.49 -0.32 0.62 16 29 H 0.09 0.81 7.26 -51.93 -0.38 0.44 16 30 H 0.09 0.60 8.00 -51.93 -0.42 0.18 16 31 H 0.09 0.88 7.61 -51.93 -0.40 0.49 16 32 H 0.08 0.65 8.00 -51.93 -0.42 0.23 16 33 H 0.09 0.75 5.90 -51.93 -0.31 0.45 16 34 H 0.10 1.14 7.90 -51.93 -0.41 0.73 16 35 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.20 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -34.79 384.12 -9.42 -44.21 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.82 Total: 0.38 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -1.34 Total: -31.08 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.42 Total: -36.91 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.88 Total: -35.85 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 37.51 SS G_CDS: -0.57 Total: 36.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.79 -9.42 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272495506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.108 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds