Wall clock time and date at job start Tue Mar 31 2020 15:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 119.99509 * 2 1 4 4 N 1.46496 * 109.46916 * 125.00031 * 3 2 1 5 5 C 1.46502 * 119.99960 * 85.00057 * 4 3 2 6 6 C 1.53008 * 109.46999 * 274.99938 * 5 4 3 7 7 C 1.50697 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.34511 * 125.79278 * 90.00315 * 7 6 5 9 9 C 1.41386 * 106.84141 * 180.02562 * 8 7 6 10 10 C 1.34507 * 106.84010 * 0.02562 * 9 8 7 11 11 O 1.34304 * 108.42311 * 359.97438 * 10 9 8 12 12 S 1.65608 * 120.00334 * 265.00013 * 4 3 2 13 13 O 1.42103 * 104.27308 * 26.07251 * 12 4 3 14 14 O 1.42101 * 104.27692 * 153.92500 * 12 4 3 15 15 C 1.81396 * 104.44877 * 270.00004 * 12 4 3 16 16 C 1.53003 * 109.46778 * 179.97438 * 15 12 4 17 17 C 1.53002 * 109.46786 * 179.97438 * 16 15 12 18 18 C 1.50695 * 109.47211 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99817 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00392 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99595 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47518 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47243 * 120.00048 * 22 20 18 25 25 H 1.48500 * 109.47106 * 239.99725 * 22 20 18 26 26 H 1.08009 * 120.00047 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00425 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00096 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47161 * 5.00396 * 3 2 1 30 30 H 1.08993 * 109.47500 * 245.00072 * 3 2 1 31 31 H 1.09001 * 109.46968 * 155.00415 * 5 4 3 32 32 H 1.08995 * 109.47318 * 35.00163 * 5 4 3 33 33 H 1.08994 * 109.46939 * 60.00018 * 6 5 4 34 34 H 1.09003 * 109.47242 * 299.99604 * 6 5 4 35 35 H 1.07999 * 126.58024 * 359.97438 * 8 7 6 36 36 H 1.08004 * 126.57483 * 179.97438 * 9 8 7 37 37 H 1.08004 * 125.79019 * 180.26381 * 10 9 8 38 38 H 1.08992 * 109.47178 * 299.99792 * 15 12 4 39 39 H 1.09003 * 109.46998 * 59.99628 * 15 12 4 40 40 H 1.08992 * 109.47512 * 300.00096 * 16 15 12 41 41 H 1.09004 * 109.46554 * 60.00569 * 16 15 12 42 42 H 1.09005 * 109.47524 * 300.00268 * 17 16 15 43 43 H 1.09003 * 109.46898 * 60.00193 * 17 16 15 44 44 H 0.97001 * 119.99737 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 4.3216 0.7270 1.0023 6 6 4.2309 -0.7708 1.3016 7 6 5.5971 -1.3929 1.1695 8 6 6.5030 -1.5186 2.1558 9 6 7.6344 -2.1540 1.5942 10 6 7.3524 -2.3780 0.2983 11 8 6.1170 -1.9152 0.0466 12 16 2.5441 2.0463 2.5563 13 8 1.1263 1.9509 2.5640 14 8 3.3280 1.3871 3.5413 15 6 3.0649 3.7749 2.3802 16 6 2.6997 4.5493 3.6482 17 6 3.1396 6.0072 3.4999 18 6 2.7805 6.7698 4.7491 19 1 2.2881 6.2650 5.5671 20 6 3.0804 8.1119 4.8477 21 7 3.6803 8.7264 3.8517 22 14 2.6345 9.0573 6.3958 23 1 1.9713 8.1435 7.3602 24 1 3.8676 9.6139 7.0084 25 1 1.7099 10.1665 6.0495 26 1 -0.5401 -0.9354 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3584 2.1317 0.0896 30 1 2.6212 1.4028 -0.9313 31 1 5.0055 1.1978 1.7085 32 1 4.6903 0.8730 -0.0129 33 1 3.5470 -1.2416 0.5955 34 1 3.8623 -0.9168 2.3170 35 1 6.3886 -1.1954 3.1799 36 1 8.5498 -2.4095 2.1073 37 1 8.0064 -2.8540 -0.4174 38 1 4.1433 3.8157 2.2271 39 1 2.5593 4.2213 1.5239 40 1 1.6213 4.5085 3.8010 41 1 3.2052 4.1029 4.5047 42 1 4.2181 6.0476 3.3474 43 1 2.6345 6.4537 2.6434 44 1 3.8917 9.6706 3.9212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272495506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:14 Heat of formation + Delta-G solvation = -69.211489 kcal Electronic energy + Delta-G solvation = -25569.449265 eV Core-core repulsion = 21808.224504 eV Total energy + Delta-G solvation = -3761.224761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.44126 -38.49432 -38.26512 -36.99633 -36.47430 -34.81458 -34.17432 -33.83033 -32.71539 -29.66944 -28.88958 -26.68365 -25.59674 -24.14575 -22.63193 -22.33236 -21.37019 -20.80193 -19.93727 -18.82356 -18.57328 -18.15587 -17.51852 -17.18262 -16.86030 -16.51237 -16.27788 -15.86935 -15.57825 -15.43048 -14.89568 -14.59149 -14.49003 -14.08292 -13.79577 -13.71478 -13.56008 -13.52847 -13.46154 -13.26001 -13.15366 -13.00654 -12.90482 -12.78242 -12.62420 -12.58990 -12.15643 -12.08981 -11.78514 -11.73600 -11.38066 -11.11288 -10.83138 -10.59091 -10.30916 -10.17174 -9.30902 -8.23840 -6.34838 -0.80027 0.82206 1.28759 1.39016 1.39771 1.53035 1.71915 1.81865 2.15216 2.39086 2.80096 3.09721 3.13959 3.54617 3.77589 3.87768 3.93391 4.03558 4.10223 4.16528 4.18253 4.26037 4.34538 4.37779 4.55073 4.61156 4.71644 4.83028 4.90415 4.94601 4.96302 5.01164 5.04825 5.12278 5.12766 5.29641 5.44155 5.53938 5.61436 5.63406 5.77648 5.78284 5.92895 6.18534 6.24483 6.80911 7.34630 8.87896 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002832 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.881195 B = 9884.671791 C =11222.265408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.191 4.191 3 C 0.141 3.859 4 N -0.988 5.988 5 C 0.125 3.875 6 C -0.059 4.059 7 C -0.020 4.020 8 C -0.227 4.227 9 C -0.230 4.230 10 C -0.040 4.040 11 O -0.186 6.186 12 S 2.616 3.384 13 O -0.977 6.977 14 O -0.982 6.982 15 C -0.612 4.612 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.552 4.552 19 H 0.060 0.940 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.239 0.761 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 -22.674 -12.661 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.211 4.211 3 C 0.018 3.982 4 N -0.824 5.824 5 C 0.000 4.000 6 C -0.098 4.098 7 C -0.070 4.070 8 C -0.246 4.246 9 C -0.249 4.249 10 C -0.107 4.107 11 O -0.083 6.083 12 S 2.712 3.288 13 O -0.967 6.967 14 O -0.972 6.972 15 C -0.742 4.742 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.590 4.590 19 H 0.078 0.922 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.787 3.213 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.126 0.874 27 H 0.115 0.885 28 H 0.138 0.862 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.164 0.836 36 H 0.181 0.819 37 H 0.255 0.745 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.935 -22.953 -12.288 26.200 hybrid contribution 0.370 1.204 0.757 1.469 sum 3.305 -21.749 -11.531 24.837 Atomic orbital electron populations 1.24080 0.96257 1.02628 0.98221 1.23466 0.96401 0.99307 1.01883 1.20693 0.91525 0.96189 0.89834 1.57480 1.23794 1.70560 1.30577 1.21426 0.82252 0.91348 1.04957 1.20675 0.89236 0.95515 1.04336 1.22355 0.97577 1.02635 0.84464 1.21949 0.95166 1.06380 1.01097 1.22163 1.01201 1.05880 0.95655 1.24765 0.84753 1.02604 0.98531 1.84007 1.28610 1.59974 1.35672 1.04803 0.73674 0.76996 0.73293 1.93541 1.30436 1.86694 1.86003 1.93530 1.72189 1.72664 1.58809 1.30576 1.13619 1.22441 1.07596 1.21306 1.01248 0.97787 0.94162 1.18962 0.95529 0.90275 0.95938 1.21764 1.39085 0.95319 1.02817 0.92216 1.25934 0.94863 0.98873 0.99890 1.70075 1.42472 1.11092 1.33318 0.85432 0.78189 0.78457 0.79214 1.18795 1.20184 1.20155 0.87359 0.88498 0.86168 0.89459 0.86375 0.89764 0.87186 0.88189 0.89438 0.83640 0.81874 0.74515 0.83908 0.83684 0.91589 0.91719 0.97917 0.97816 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 14.32 67.78 0.97 -2.15 16 2 C -0.19 -3.28 9.45 25.65 0.24 -3.04 16 3 C 0.14 2.31 5.72 85.64 0.49 2.80 16 4 N -0.99 -19.72 2.73 -519.84 -1.42 -21.14 16 5 C 0.13 2.21 5.26 86.38 0.45 2.66 16 6 C -0.06 -1.10 5.85 29.85 0.17 -0.93 16 7 C -0.02 -0.40 6.57 24.83 0.16 -0.24 16 8 C -0.23 -4.81 10.81 22.19 0.24 -4.57 16 9 C -0.23 -3.94 10.91 22.19 0.24 -3.70 16 10 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 11 O -0.19 -3.51 10.65 -2.51 -0.03 -3.54 16 12 S 2.62 74.04 5.32 -56.49 -0.30 73.74 16 13 O -0.98 -32.50 16.99 -127.65 -2.17 -34.66 16 14 O -0.98 -32.81 16.75 -127.65 -2.14 -34.95 16 15 C -0.61 -18.29 6.18 71.98 0.44 -17.85 16 16 C -0.11 -4.32 5.16 30.60 0.16 -4.16 16 17 C 0.03 1.61 4.97 29.85 0.15 1.76 16 18 C -0.55 -31.49 9.11 25.60 0.23 -31.25 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.00 0.15 5.46 84.65 0.46 0.61 16 21 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 22 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H 0.11 1.64 8.06 -2.91 -0.02 1.61 16 27 H 0.10 1.81 7.84 -2.91 -0.02 1.79 16 28 H 0.12 1.79 6.04 -2.91 -0.02 1.77 16 29 H 0.09 1.47 7.26 -2.39 -0.02 1.45 16 30 H 0.12 1.22 8.00 -2.39 -0.02 1.20 16 31 H 0.08 1.58 7.61 -2.39 -0.02 1.56 16 32 H 0.11 1.39 8.00 -2.39 -0.02 1.37 16 33 H 0.10 1.55 5.90 -2.39 -0.01 1.54 16 34 H 0.09 1.91 7.90 -2.39 -0.02 1.89 16 35 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.24 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 39 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 42 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 43 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -75.22 384.12 2.46 -72.76 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.97 Total: 16.78 kcal Atomic # 6 Polarization: -65.03 SS G_CDS: 5.23 Total: -59.80 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.13 Total: -76.57 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -4.33 Total: -73.15 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 74.04 SS G_CDS: -0.30 Total: 73.74 kcal Total: -75.22 2.46 -72.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272495506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.546 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds