Wall clock time and date at job start Tue Mar 31 2020 15:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 H 1.08992 * 109.46974 * 55.07081 * 3 2 1 5 5 C 1.50696 * 109.47036 * 175.07297 * 3 2 1 6 6 H 1.08001 * 119.99757 * 120.00202 * 5 3 2 7 7 C 1.37879 * 120.00282 * 299.99673 * 5 3 2 8 8 N 1.31511 * 119.99470 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00252 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47060 * 59.99890 * 9 7 5 11 11 H 1.48500 * 109.47286 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47147 * 300.00527 * 9 7 5 13 13 N 1.46503 * 109.46988 * 295.07218 * 3 2 1 14 14 S 1.65602 * 119.99757 * 120.09758 * 13 3 2 15 15 O 1.42103 * 106.39998 * 177.62181 * 14 13 3 16 16 O 1.42094 * 106.40377 * 310.54884 * 14 13 3 17 17 C 1.76203 * 107.21574 * 64.08995 * 14 13 3 18 18 C 1.38288 * 119.93867 * 245.60838 * 17 14 13 19 19 C 1.38132 * 120.05395 * 179.97438 * 18 17 14 20 20 C 1.38754 * 119.94124 * 0.02562 * 19 18 17 21 21 O 1.35897 * 120.05153 * 179.97438 * 20 19 18 22 22 C 1.42900 * 117.00472 * 359.97438 * 21 20 19 23 23 C 1.38714 * 119.89173 * 0.02562 * 20 19 18 24 24 C 1.50698 * 120.02799 * 180.02562 * 23 20 19 25 25 C 1.38167 * 119.93909 * 359.70530 * 23 20 19 26 26 C 1.50698 * 119.97175 * 180.29744 * 25 23 20 27 27 H 1.08999 * 109.47130 * 65.38485 * 1 2 3 28 28 H 1.09003 * 109.47038 * 185.37975 * 1 2 3 29 29 H 1.08995 * 109.47584 * 305.38337 * 1 2 3 30 30 H 1.09002 * 109.47225 * 240.00304 * 2 1 3 31 31 H 1.08997 * 109.47140 * 120.00296 * 2 1 3 32 32 H 0.97008 * 119.99544 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00200 * 300.09770 * 13 3 2 34 34 H 1.07999 * 119.97700 * 359.97438 * 18 17 14 35 35 H 1.07994 * 120.02456 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47354 * 179.97438 * 22 21 20 37 37 H 1.09005 * 109.47026 * 300.00220 * 22 21 20 38 38 H 1.09000 * 109.46952 * 60.00083 * 22 21 20 39 39 H 1.09003 * 109.46752 * 90.00135 * 24 23 20 40 40 H 1.08994 * 109.46972 * 209.99568 * 24 23 20 41 41 H 1.08997 * 109.47024 * 330.00038 * 24 23 20 42 42 H 1.09004 * 109.47194 * 273.23974 * 26 25 23 43 43 H 1.09010 * 109.47271 * 33.23126 * 26 25 23 44 44 H 1.09000 * 109.47530 * 153.23319 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9811 0.8425 5 6 3.5420 1.4442 0.1220 6 1 4.1463 1.8892 -0.6547 7 6 4.1447 0.8779 1.2252 8 7 3.4088 0.3358 2.1707 9 14 6.0065 0.8807 1.3768 10 1 6.5011 2.2809 1.3771 11 1 6.4010 0.2156 2.6446 12 1 6.5978 0.1473 0.2288 13 7 1.6509 2.0980 -1.2511 14 16 0.6932 3.4485 -1.2152 15 8 0.5443 3.8708 -2.5639 16 8 -0.4075 3.1376 -0.3721 17 6 1.6060 4.7135 -0.3958 18 6 1.1689 5.2013 0.8221 19 6 1.8829 6.1926 1.4668 20 6 3.0392 6.6992 0.8911 21 8 3.7431 7.6748 1.5232 22 6 3.2346 8.1328 2.7776 23 6 3.4749 6.2089 -0.3312 24 6 4.7307 6.7565 -0.9590 25 6 2.7602 5.2134 -0.9693 26 6 3.2365 4.6756 -2.2940 27 1 -0.3633 0.4280 -0.9343 28 1 -0.3633 -1.0232 0.0964 29 1 -0.3634 0.5950 0.8378 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8328 -0.0630 2.9467 33 1 1.9542 1.7410 -2.1005 34 1 0.2686 4.8069 1.2697 35 1 1.5413 6.5729 2.4182 36 1 3.8893 8.9091 3.1735 37 1 2.2327 8.5386 2.6372 38 1 3.1941 7.2996 3.4792 39 1 5.5883 6.1722 -0.6253 40 1 4.6503 6.6963 -2.0443 41 1 4.8618 7.7968 -0.6614 42 1 2.8418 5.2938 -3.1003 43 1 4.3261 4.6934 -2.3228 44 1 2.8865 3.6507 -2.4171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273961972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:35 Heat of formation + Delta-G solvation = -99.793772 kcal Electronic energy + Delta-G solvation = -27608.863135 eV Core-core repulsion = 23846.312228 eV Total energy + Delta-G solvation = -3762.550908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27147 -37.74310 -36.69687 -35.88410 -35.22722 -33.25574 -32.22445 -31.47864 -30.46813 -27.72716 -27.46663 -26.60025 -25.93655 -22.98016 -22.32398 -20.83321 -20.09921 -18.80490 -17.64033 -17.28632 -16.80153 -16.63432 -16.16918 -15.84454 -15.22577 -14.59895 -14.11437 -14.07158 -13.93421 -13.72434 -13.21308 -12.95459 -12.92995 -12.85184 -12.60759 -12.24019 -12.09054 -11.99132 -11.73348 -11.67096 -11.59834 -11.41718 -11.31888 -11.18576 -11.06360 -10.92937 -10.79871 -10.71144 -10.46629 -10.19126 -9.92972 -9.67199 -9.48413 -8.50620 -8.49488 -8.27418 -8.16525 -6.11297 -4.19471 1.05163 1.29423 1.49179 3.17468 3.24804 3.29966 3.31961 3.55894 3.85746 4.35476 4.39109 4.75842 4.84216 4.96379 5.05223 5.12316 5.18711 5.23657 5.31110 5.36969 5.41140 5.64850 5.80350 5.85658 5.89151 5.91852 6.15055 6.18675 6.27698 6.35228 6.37942 6.40899 6.44189 6.55006 6.68382 6.84534 6.93725 7.13601 7.27491 7.36068 7.62275 7.68496 7.89638 8.03377 8.27858 8.83448 9.46889 10.93050 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.006499 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.629066 B = 4307.408553 C = 5678.967753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.282 3.718 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 N -1.101 6.101 14 S 2.695 3.305 15 O -0.984 6.984 16 O -0.968 6.968 17 C -0.694 4.694 18 C 0.020 3.980 19 C -0.233 4.233 20 C 0.175 3.825 21 O -0.313 6.313 22 C 0.025 3.975 23 C -0.143 4.143 24 C -0.103 4.103 25 C 0.065 3.935 26 C -0.139 4.139 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.103 0.897 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 11.495 -2.100 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.178 3.822 4 H 0.065 0.935 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.861 5.861 14 S 2.784 3.216 15 O -0.974 6.974 16 O -0.958 6.958 17 C -0.780 4.780 18 C 0.001 3.999 19 C -0.252 4.252 20 C 0.129 3.871 21 O -0.225 6.225 22 C -0.070 4.070 23 C -0.145 4.145 24 C -0.160 4.160 25 C 0.064 3.936 26 C -0.196 4.196 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.975 11.665 -2.107 11.894 hybrid contribution 1.620 0.085 0.699 1.767 sum 0.645 11.750 -1.408 11.851 Atomic orbital electron populations 1.21818 0.98586 0.99232 1.00769 1.21896 0.92377 0.99505 1.02885 1.18557 0.94651 0.90089 0.78941 0.93549 1.21410 0.91197 1.38141 1.05833 0.91887 1.24889 0.98161 0.94997 0.95600 1.69853 1.35050 1.38038 1.09498 0.86649 0.85619 0.78302 0.77420 1.20259 1.21269 1.20153 1.55542 1.71171 1.43058 1.16365 1.01640 0.73747 0.73165 0.73000 1.93530 1.86395 1.82607 1.34855 1.93535 1.49477 1.83546 1.69244 1.30700 1.13280 1.23565 1.10477 1.20665 0.97234 0.91192 0.90806 1.21196 0.97937 1.03465 1.02635 1.18967 0.89830 0.86991 0.91291 1.86051 1.50378 1.51247 1.34852 1.23102 1.00315 0.99932 0.83694 1.19060 1.00259 1.00681 0.94453 1.20609 0.94190 1.00931 1.00226 1.19085 0.90012 0.90286 0.94218 1.21234 1.02863 1.02159 0.93319 0.94609 0.94850 0.92940 0.94298 0.87899 0.92612 0.75970 0.83939 0.84987 0.88250 0.92515 0.92227 0.91214 0.91332 0.91450 0.89151 0.89871 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.56 37.15 0.36 -2.66 16 2 C -0.13 -2.86 5.45 -26.73 -0.15 -3.01 16 3 C 0.28 6.53 2.27 -69.08 -0.16 6.37 16 4 H 0.05 1.18 7.69 -51.93 -0.40 0.78 16 5 C -0.53 -13.16 8.84 -34.44 -0.30 -13.47 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -23.74 11.29 55.43 0.63 -23.11 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -1.10 -21.69 3.83 -5.88 -0.02 -21.71 16 14 S 2.70 52.43 4.79 -107.50 -0.52 51.92 16 15 O -0.98 -19.54 16.36 -57.17 -0.94 -20.48 16 16 O -0.97 -20.67 16.40 -57.17 -0.94 -21.61 16 17 C -0.69 -13.04 5.87 -39.56 -0.23 -13.27 16 18 C 0.02 0.36 9.54 -39.60 -0.38 -0.02 16 19 C -0.23 -3.66 9.04 -39.43 -0.36 -4.02 16 20 C 0.18 2.81 6.66 -39.21 -0.26 2.55 16 21 O -0.31 -4.33 9.54 -19.42 -0.19 -4.51 16 22 C 0.02 0.24 9.81 101.05 0.99 1.23 16 23 C -0.14 -2.36 5.89 -104.47 -0.62 -2.98 16 24 C -0.10 -1.37 8.98 36.00 0.32 -1.05 16 25 C 0.07 1.15 5.87 -104.65 -0.61 0.54 16 26 C -0.14 -2.15 7.91 36.00 0.28 -1.87 16 27 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.41 7.09 8.58 -34.47 -0.30 6.79 16 34 H 0.14 2.36 7.33 -52.49 -0.38 1.97 16 35 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 38 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.79 6.78 -51.93 -0.35 0.44 16 41 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.12 6.89 -51.92 -0.36 0.76 16 44 H 0.08 1.23 4.92 -51.93 -0.26 0.97 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -30.78 364.23 -9.07 -39.85 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.36 Total: 8.89 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -1.20 Total: -30.03 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.60 Total: -44.82 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -2.06 Total: -46.60 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 52.43 SS G_CDS: -0.52 Total: 51.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.78 -9.07 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273961972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.939 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds