Wall clock time and date at job start Tue Mar 31 2020 15:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 H 1.08992 * 109.46974 * 55.07081 * 3 2 1 5 5 C 1.50696 * 109.47036 * 175.07297 * 3 2 1 6 6 H 1.08001 * 119.99757 * 120.00202 * 5 3 2 7 7 C 1.37879 * 120.00282 * 299.99673 * 5 3 2 8 8 N 1.31511 * 119.99470 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00252 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47060 * 59.99890 * 9 7 5 11 11 H 1.48500 * 109.47286 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47147 * 300.00527 * 9 7 5 13 13 N 1.46503 * 109.46988 * 295.07218 * 3 2 1 14 14 S 1.65602 * 119.99757 * 120.09758 * 13 3 2 15 15 O 1.42103 * 106.39998 * 177.62181 * 14 13 3 16 16 O 1.42094 * 106.40377 * 310.54884 * 14 13 3 17 17 C 1.76203 * 107.21574 * 64.08995 * 14 13 3 18 18 C 1.38288 * 119.93867 * 245.60838 * 17 14 13 19 19 C 1.38132 * 120.05395 * 179.97438 * 18 17 14 20 20 C 1.38754 * 119.94124 * 0.02562 * 19 18 17 21 21 O 1.35897 * 120.05153 * 179.97438 * 20 19 18 22 22 C 1.42900 * 117.00472 * 359.97438 * 21 20 19 23 23 C 1.38714 * 119.89173 * 0.02562 * 20 19 18 24 24 C 1.50698 * 120.02799 * 180.02562 * 23 20 19 25 25 C 1.38167 * 119.93909 * 359.70530 * 23 20 19 26 26 C 1.50698 * 119.97175 * 180.29744 * 25 23 20 27 27 H 1.08999 * 109.47130 * 65.38485 * 1 2 3 28 28 H 1.09003 * 109.47038 * 185.37975 * 1 2 3 29 29 H 1.08995 * 109.47584 * 305.38337 * 1 2 3 30 30 H 1.09002 * 109.47225 * 240.00304 * 2 1 3 31 31 H 1.08997 * 109.47140 * 120.00296 * 2 1 3 32 32 H 0.97008 * 119.99544 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00200 * 300.09770 * 13 3 2 34 34 H 1.07999 * 119.97700 * 359.97438 * 18 17 14 35 35 H 1.07994 * 120.02456 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47354 * 179.97438 * 22 21 20 37 37 H 1.09005 * 109.47026 * 300.00220 * 22 21 20 38 38 H 1.09000 * 109.46952 * 60.00083 * 22 21 20 39 39 H 1.09003 * 109.46752 * 90.00135 * 24 23 20 40 40 H 1.08994 * 109.46972 * 209.99568 * 24 23 20 41 41 H 1.08997 * 109.47024 * 330.00038 * 24 23 20 42 42 H 1.09004 * 109.47194 * 273.23974 * 26 25 23 43 43 H 1.09010 * 109.47271 * 33.23126 * 26 25 23 44 44 H 1.09000 * 109.47530 * 153.23319 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9811 0.8425 5 6 3.5420 1.4442 0.1220 6 1 4.1463 1.8892 -0.6547 7 6 4.1447 0.8779 1.2252 8 7 3.4088 0.3358 2.1707 9 14 6.0065 0.8807 1.3768 10 1 6.5011 2.2809 1.3771 11 1 6.4010 0.2156 2.6446 12 1 6.5978 0.1473 0.2288 13 7 1.6509 2.0980 -1.2511 14 16 0.6932 3.4485 -1.2152 15 8 0.5443 3.8708 -2.5639 16 8 -0.4075 3.1376 -0.3721 17 6 1.6060 4.7135 -0.3958 18 6 1.1689 5.2013 0.8221 19 6 1.8829 6.1926 1.4668 20 6 3.0392 6.6992 0.8911 21 8 3.7431 7.6748 1.5232 22 6 3.2346 8.1328 2.7776 23 6 3.4749 6.2089 -0.3312 24 6 4.7307 6.7565 -0.9590 25 6 2.7602 5.2134 -0.9693 26 6 3.2365 4.6756 -2.2940 27 1 -0.3633 0.4280 -0.9343 28 1 -0.3633 -1.0232 0.0964 29 1 -0.3634 0.5950 0.8378 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8328 -0.0630 2.9467 33 1 1.9542 1.7410 -2.1005 34 1 0.2686 4.8069 1.2697 35 1 1.5413 6.5729 2.4182 36 1 3.8893 8.9091 3.1735 37 1 2.2327 8.5386 2.6372 38 1 3.1941 7.2996 3.4792 39 1 5.5883 6.1722 -0.6253 40 1 4.6503 6.6963 -2.0443 41 1 4.8618 7.7968 -0.6614 42 1 2.8418 5.2938 -3.1003 43 1 4.3261 4.6934 -2.3228 44 1 2.8865 3.6507 -2.4171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273961972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:34 Heat of formation + Delta-G solvation = -119.487569 kcal Electronic energy + Delta-G solvation = -27609.717123 eV Core-core repulsion = 23846.312228 eV Total energy + Delta-G solvation = -3763.404895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42589 -38.88683 -38.30471 -37.63452 -36.83546 -34.48742 -34.10146 -32.72406 -32.12508 -28.76097 -28.59611 -28.41330 -27.05554 -24.82635 -23.58779 -22.03892 -21.88086 -20.35765 -18.95012 -18.75493 -18.30918 -18.05603 -17.69225 -16.97673 -16.84150 -16.24707 -15.48835 -15.29447 -15.22630 -15.05157 -14.82630 -14.64558 -14.25393 -14.11892 -13.70568 -13.54078 -13.49249 -13.29074 -13.15679 -13.08568 -13.05047 -13.01068 -12.86842 -12.68260 -12.61020 -12.55309 -12.17312 -12.10475 -11.86663 -11.81867 -11.66043 -11.48248 -11.29060 -10.44503 -9.94242 -9.75761 -9.45656 -8.06819 -6.20075 -0.42178 -0.07099 0.22633 1.45035 1.45922 1.52045 2.13706 2.16805 2.40678 2.50290 2.87869 3.21115 3.48587 3.67645 3.71365 3.99732 4.12765 4.18961 4.33945 4.35520 4.46961 4.51582 4.62559 4.66017 4.68024 4.71080 4.72760 4.76735 4.81181 4.93523 5.00003 5.05982 5.12947 5.17691 5.21278 5.36667 5.39296 5.50108 5.65027 5.71423 5.83404 6.10591 6.22052 6.24900 6.49093 6.89291 7.48718 8.96502 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.006499 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.629066 B = 4307.408553 C = 5678.967753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.290 3.710 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.268 1.268 13 N -1.097 6.097 14 S 2.708 3.292 15 O -0.989 6.989 16 O -0.992 6.992 17 C -0.716 4.716 18 C -0.001 4.001 19 C -0.235 4.235 20 C 0.173 3.827 21 O -0.318 6.318 22 C 0.012 3.988 23 C -0.158 4.158 24 C -0.101 4.101 25 C 0.050 3.950 26 C -0.145 4.145 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.262 0.738 33 H 0.417 0.583 34 H 0.143 0.857 35 H 0.161 0.839 36 H 0.128 0.872 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 12.780 -2.440 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.185 3.815 4 H 0.037 0.963 5 C -0.571 4.571 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.193 1.193 13 N -0.858 5.858 14 S 2.800 3.200 15 O -0.979 6.979 16 O -0.983 6.983 17 C -0.805 4.805 18 C -0.020 4.020 19 C -0.254 4.254 20 C 0.126 3.874 21 O -0.230 6.230 22 C -0.082 4.082 23 C -0.159 4.159 24 C -0.157 4.157 25 C 0.048 3.952 26 C -0.201 4.201 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.252 0.748 34 H 0.161 0.839 35 H 0.179 0.821 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.284 12.937 -2.477 13.175 hybrid contribution 1.227 -0.190 0.863 1.512 sum 1.511 12.747 -1.614 12.937 Atomic orbital electron populations 1.21740 0.97092 1.00431 1.00514 1.21795 0.93734 0.98908 1.02045 1.18243 0.93747 0.90222 0.79338 0.96325 1.21709 0.92211 1.37432 1.05749 0.91432 1.25557 1.01697 0.95029 0.95561 1.69983 1.36357 1.38930 1.09908 0.85790 0.81417 0.78162 0.77364 1.20145 1.21470 1.19342 1.55316 1.71109 1.43526 1.15806 1.01056 0.73323 0.73034 0.72603 1.93512 1.86563 1.82598 1.35244 1.93496 1.50959 1.84059 1.69738 1.30527 1.14421 1.24093 1.11452 1.20858 0.97900 0.92243 0.91016 1.21506 0.97664 1.02690 1.03555 1.19161 0.89732 0.87125 0.91356 1.86054 1.50374 1.50270 1.36318 1.23474 1.01990 1.00721 0.81981 1.19478 1.01187 1.00430 0.94851 1.20667 0.92546 1.01268 1.01229 1.19395 0.89819 0.90813 0.95137 1.21351 1.04171 1.01695 0.92866 0.93796 0.92644 0.94492 0.93407 0.90363 0.92844 0.74785 0.83936 0.82127 0.85363 0.91044 0.92142 0.91214 0.89538 0.90419 0.87654 0.87963 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 9.56 71.98 0.69 -5.06 16 2 C -0.12 -5.68 5.45 30.59 0.17 -5.51 16 3 C 0.29 13.59 2.27 44.24 0.10 13.69 16 4 H 0.02 0.99 7.69 -2.39 -0.02 0.97 16 5 C -0.53 -26.55 8.84 25.60 0.23 -26.32 16 6 H 0.07 3.24 7.81 -2.91 -0.02 3.22 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -49.51 11.29 21.45 0.24 -49.26 16 9 Si 0.95 41.29 29.54 68.60 2.03 43.31 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 13 N -1.10 -43.32 3.83 -172.53 -0.66 -43.98 16 14 S 2.71 106.31 4.79 -56.49 -0.27 106.04 16 15 O -0.99 -39.07 16.36 -128.00 -2.09 -41.17 16 16 O -0.99 -43.31 16.40 -128.00 -2.10 -45.41 16 17 C -0.72 -27.04 5.87 22.28 0.13 -26.91 16 18 C 0.00 -0.03 9.54 22.26 0.21 0.19 16 19 C -0.23 -7.17 9.04 22.37 0.20 -6.97 16 20 C 0.17 5.29 6.66 22.51 0.15 5.44 16 21 O -0.32 -8.06 9.54 -92.39 -0.88 -8.94 16 22 C 0.01 0.20 9.81 113.37 1.11 1.31 16 23 C -0.16 -4.99 5.89 -19.77 -0.12 -5.11 16 24 C -0.10 -2.46 8.98 71.24 0.64 -1.82 16 25 C 0.05 1.72 5.87 -19.88 -0.12 1.60 16 26 C -0.14 -4.28 7.91 71.24 0.56 -3.71 16 27 H 0.04 1.69 7.90 -2.39 -0.02 1.67 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 3.99 5.95 -2.39 -0.01 3.97 16 32 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 33 H 0.42 14.40 8.58 -96.74 -0.83 13.57 16 34 H 0.14 4.88 7.33 -2.91 -0.02 4.86 16 35 H 0.16 3.75 6.30 -2.91 -0.02 3.73 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 0.98 7.66 -2.38 -0.02 0.96 16 38 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.76 6.78 -2.39 -0.02 1.74 16 41 H 0.08 1.71 7.53 -2.39 -0.02 1.69 16 42 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 43 H 0.10 2.56 6.89 -2.38 -0.02 2.54 16 44 H 0.07 2.07 4.92 -2.39 -0.01 2.06 16 Total: -1.00 -65.33 364.23 0.86 -64.47 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.19 Total: 32.54 kcal Atomic # 6 Polarization: -62.01 SS G_CDS: 4.41 Total: -57.60 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -0.42 Total: -93.25 kcal Atomic # 8 Polarization: -90.44 SS G_CDS: -5.08 Total: -95.51 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 106.31 SS G_CDS: -0.27 Total: 106.04 kcal Total: -65.33 0.86 -64.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273961972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.016 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds