Wall clock time and date at job start Tue Mar 31 2020 15:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47143 * 2 1 4 4 N 1.46500 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99550 * 64.03427 * 4 3 2 6 6 H 1.07999 * 119.99844 * 191.98297 * 5 4 3 7 7 C 1.38812 * 120.00260 * 11.99756 * 5 4 3 8 8 N 1.31625 * 120.00144 * 18.12192 * 7 5 4 9 9 Si 1.86799 * 119.99973 * 198.12654 * 7 5 4 10 10 H 1.48504 * 109.47031 * 59.99746 * 9 7 5 11 11 H 1.48506 * 109.47058 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47299 * 299.99483 * 9 7 5 13 13 S 1.65600 * 120.00111 * 244.04056 * 4 3 2 14 14 O 1.42097 * 106.40260 * 344.46922 * 13 4 3 15 15 O 1.42103 * 106.39794 * 211.55300 * 13 4 3 16 16 C 1.76192 * 107.21804 * 98.01658 * 13 4 3 17 17 C 1.38171 * 120.02889 * 279.72532 * 16 13 4 18 18 C 1.50699 * 119.96872 * 359.97438 * 17 16 13 19 19 C 1.38237 * 120.05650 * 180.30071 * 17 16 13 20 20 C 1.38289 * 120.11517 * 359.67891 * 19 17 16 21 21 C 1.50696 * 119.97457 * 180.02562 * 20 19 17 22 22 C 1.38128 * 120.04859 * 0.02562 * 20 19 17 23 23 C 1.38711 * 120.02987 * 99.40885 * 16 13 4 24 24 O 1.35895 * 120.05777 * 359.97438 * 23 16 13 25 25 C 1.42901 * 117.00462 * 179.72765 * 24 23 16 26 26 H 1.08995 * 109.46998 * 60.00201 * 1 2 3 27 27 H 1.09000 * 109.46875 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47023 * 299.99560 * 1 2 3 29 29 H 1.08997 * 109.47407 * 240.00060 * 2 1 3 30 30 H 1.09004 * 109.47208 * 119.99860 * 2 1 3 31 31 H 1.09005 * 109.47187 * 59.99814 * 3 2 1 32 32 H 1.09003 * 109.47403 * 300.00298 * 3 2 1 33 33 H 0.96994 * 119.99950 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47584 * 278.23025 * 18 17 16 35 35 H 1.09005 * 109.47454 * 38.23401 * 18 17 16 36 36 H 1.09006 * 109.47369 * 158.23056 * 18 17 16 37 37 H 1.08008 * 119.94429 * 179.69876 * 19 17 16 38 38 H 1.09004 * 109.47032 * 269.97297 * 21 20 19 39 39 H 1.08994 * 109.47671 * 29.97122 * 21 20 19 40 40 H 1.09002 * 109.46984 * 149.97935 * 21 20 19 41 41 H 1.07999 * 120.02175 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.47335 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.46535 * 60.00481 * 25 24 23 44 44 H 1.08995 * 109.47115 * 300.00362 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 0.9232 -1.0653 6 1 5.2524 0.7442 -0.9890 7 6 3.5193 0.6270 -2.2439 8 7 2.3369 1.1556 -2.4789 9 14 4.2944 -0.5217 -3.4965 10 1 4.5275 -1.8492 -2.8730 11 1 3.3828 -0.6744 -4.6588 12 1 5.5888 0.0448 -3.9532 13 16 4.3325 2.0705 1.2903 14 8 3.3954 2.8383 2.0329 15 8 5.5393 2.6097 0.7686 16 6 4.7962 0.7187 2.3208 17 6 3.8776 0.1676 3.1935 18 6 2.4787 0.7238 3.2640 19 6 4.2425 -0.8890 4.0067 20 6 5.5254 -1.4015 3.9444 21 6 5.9198 -2.5538 4.8319 22 6 6.4456 -0.8581 3.0693 23 6 6.0818 0.2024 2.2519 24 8 6.9851 0.7381 1.3895 25 6 8.2918 0.1598 1.3766 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.8680 0.9483 -3.3023 34 1 2.4711 1.6086 3.9004 35 1 2.1440 0.9937 2.2624 36 1 1.8090 -0.0289 3.6803 37 1 3.5244 -1.3152 4.6916 38 1 6.3151 -2.1694 5.7722 39 1 5.0461 -3.1741 5.0317 40 1 6.6835 -3.1512 4.3339 41 1 7.4473 -1.2590 3.0207 42 1 8.9120 0.6797 0.6464 43 1 8.2200 -0.8941 1.1081 44 1 8.7402 0.2532 2.3657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278538258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:16 Heat of formation + Delta-G solvation = -72.763804 kcal Electronic energy + Delta-G solvation = -28249.084456 eV Core-core repulsion = 24487.705655 eV Total energy + Delta-G solvation = -3761.378801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.97959 -37.69436 -36.42572 -35.96922 -34.61121 -33.43938 -32.00750 -30.93604 -30.83140 -27.82431 -27.06600 -26.20903 -25.68934 -23.58927 -21.76368 -20.84186 -20.29076 -18.50734 -17.70802 -16.93591 -16.55765 -16.44976 -16.06169 -15.45372 -14.49056 -14.28507 -14.11049 -13.92115 -13.73733 -13.71095 -13.49239 -13.25100 -12.96974 -12.64130 -12.43344 -12.02533 -11.91966 -11.87376 -11.77006 -11.50754 -11.38035 -11.22788 -11.11502 -10.96696 -10.83395 -10.62396 -10.55899 -10.48333 -10.39389 -10.22712 -9.89333 -9.68405 -9.50706 -9.04174 -8.63451 -7.98918 -7.77089 -5.96067 -3.70280 1.18404 1.65684 1.69843 3.28473 3.32274 3.35193 3.51028 3.70454 4.22103 4.55862 4.77185 4.84049 4.86940 5.10474 5.24105 5.26391 5.29880 5.32162 5.47675 5.49141 5.56750 5.66386 5.73272 5.80625 5.90549 6.00466 6.03146 6.06849 6.08526 6.26051 6.35067 6.43273 6.56426 6.58546 6.69316 6.71970 6.90115 6.98545 7.01045 7.16160 7.57847 7.58864 7.67761 8.01398 8.62326 9.10780 9.47562 10.91428 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.006516 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.185704 B = 4296.020930 C = 4980.090813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.112 3.888 4 N -0.837 5.837 5 C -0.298 4.298 6 H 0.101 0.899 7 C 0.040 3.960 8 N -0.873 5.873 9 Si 0.906 3.094 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.275 1.275 13 S 2.661 3.339 14 O -0.988 6.988 15 O -0.951 6.951 16 C -0.711 4.711 17 C 0.059 3.941 18 C -0.147 4.147 19 C -0.190 4.190 20 C -0.007 4.007 21 C -0.117 4.117 22 C -0.246 4.246 23 C 0.229 3.771 24 O -0.278 6.278 25 C 0.023 3.977 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.133 0.867 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -6.760 10.351 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.014 4.014 4 N -0.669 5.669 5 C -0.429 4.429 6 H 0.119 0.881 7 C -0.163 4.163 8 N -0.515 5.515 9 Si 0.733 3.267 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.200 1.200 13 S 2.749 3.251 14 O -0.978 6.978 15 O -0.941 6.941 16 C -0.793 4.793 17 C 0.058 3.942 18 C -0.203 4.203 19 C -0.209 4.209 20 C -0.008 4.008 21 C -0.174 4.174 22 C -0.265 4.265 23 C 0.180 3.820 24 O -0.188 6.188 25 C -0.072 4.072 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.150 0.850 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.073 0.927 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.621 -5.733 10.282 12.317 hybrid contribution 0.674 -1.924 -0.292 2.059 sum 4.296 -7.657 9.990 13.300 Atomic orbital electron populations 1.21652 0.97413 0.99853 1.01086 1.21849 0.93815 0.99387 1.01457 1.21849 0.79591 0.96689 1.03232 1.53194 1.12713 1.75360 1.25608 1.19139 0.93418 1.40283 0.90032 0.88142 1.24861 0.96062 0.98106 0.97289 1.69803 1.14905 1.41492 1.25265 0.86334 0.79072 0.81142 0.80165 1.20460 1.21068 1.20018 1.03230 0.73343 0.75847 0.72711 1.93458 1.63031 1.68716 1.72616 1.93504 1.46061 1.76422 1.78096 1.31011 0.99068 1.28326 1.20911 1.19362 0.94262 0.91052 0.89522 1.21472 0.91445 1.01609 1.05783 1.20831 0.96455 1.00158 1.03455 1.19790 0.93115 0.94342 0.93508 1.20863 1.02143 0.95705 0.98662 1.21059 1.00999 1.01550 1.02936 1.18391 0.88099 0.89122 0.86379 1.86521 1.21027 1.55678 1.55596 1.23126 0.82574 0.99093 1.02392 0.92456 0.94365 0.94014 0.90254 0.94776 0.93147 0.84997 0.92602 0.88790 0.88984 0.91278 0.85829 0.90810 0.91162 0.91436 0.85409 0.87826 0.92701 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.12 16 2 C -0.13 -2.63 5.20 -26.73 -0.14 -2.77 16 3 C 0.11 2.58 4.16 -4.04 -0.02 2.56 16 4 N -0.84 -20.72 3.05 -59.91 -0.18 -20.91 16 5 C -0.30 -7.83 9.04 -15.06 -0.14 -7.96 16 6 H 0.10 2.67 7.67 -52.49 -0.40 2.27 16 7 C 0.04 1.03 3.95 -17.43 -0.07 0.97 16 8 N -0.87 -22.39 9.27 55.49 0.51 -21.87 16 9 Si 0.91 20.36 29.59 -169.99 -5.03 15.33 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 S 2.66 63.28 5.08 -107.50 -0.55 62.73 16 14 O -0.99 -23.47 13.63 -57.17 -0.78 -24.25 16 15 O -0.95 -24.92 14.92 -66.47 -0.99 -25.91 16 16 C -0.71 -14.91 5.97 -39.43 -0.24 -15.15 16 17 C 0.06 1.09 5.87 -104.65 -0.61 0.48 16 18 C -0.15 -2.50 8.07 36.01 0.29 -2.21 16 19 C -0.19 -2.96 9.32 -39.56 -0.37 -3.33 16 20 C -0.01 -0.10 5.88 -104.65 -0.62 -0.72 16 21 C -0.12 -1.18 10.01 36.00 0.36 -0.82 16 22 C -0.25 -3.91 8.69 -39.43 -0.34 -4.26 16 23 C 0.23 4.48 6.65 -39.22 -0.26 4.22 16 24 O -0.28 -5.52 8.10 -42.09 -0.34 -5.86 16 25 C 0.02 0.32 9.81 101.05 0.99 1.31 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.85 5.93 -51.93 -0.31 1.54 16 30 H 0.03 0.68 7.08 -51.93 -0.37 0.31 16 31 H 0.05 1.09 5.29 -51.93 -0.27 0.82 16 32 H 0.13 3.31 5.63 -51.93 -0.29 3.02 16 33 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 34 H 0.09 1.56 7.71 -51.93 -0.40 1.16 16 35 H 0.09 1.73 2.46 -51.93 -0.13 1.60 16 36 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 37 H 0.12 1.56 8.05 -52.48 -0.42 1.14 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.13 1.63 6.30 -52.49 -0.33 1.30 16 42 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.65 7.66 -51.93 -0.40 0.26 16 44 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -31.00 352.17 -9.06 -40.07 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.23 Total: 5.17 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -0.79 Total: -29.80 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.33 Total: -42.78 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -2.11 Total: -56.02 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Atomic # 16 Polarization: 63.28 SS G_CDS: -0.55 Total: 62.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.00 -9.06 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278538258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.696 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds