Wall clock time and date at job start Tue Mar 31 2020 15:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47143 * 2 1 4 4 N 1.46500 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99550 * 64.03427 * 4 3 2 6 6 H 1.07999 * 119.99844 * 191.98297 * 5 4 3 7 7 C 1.38812 * 120.00260 * 11.99756 * 5 4 3 8 8 N 1.31625 * 120.00144 * 18.12192 * 7 5 4 9 9 Si 1.86799 * 119.99973 * 198.12654 * 7 5 4 10 10 H 1.48504 * 109.47031 * 59.99746 * 9 7 5 11 11 H 1.48506 * 109.47058 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47299 * 299.99483 * 9 7 5 13 13 S 1.65600 * 120.00111 * 244.04056 * 4 3 2 14 14 O 1.42097 * 106.40260 * 344.46922 * 13 4 3 15 15 O 1.42103 * 106.39794 * 211.55300 * 13 4 3 16 16 C 1.76192 * 107.21804 * 98.01658 * 13 4 3 17 17 C 1.38171 * 120.02889 * 279.72532 * 16 13 4 18 18 C 1.50699 * 119.96872 * 359.97438 * 17 16 13 19 19 C 1.38237 * 120.05650 * 180.30071 * 17 16 13 20 20 C 1.38289 * 120.11517 * 359.67891 * 19 17 16 21 21 C 1.50696 * 119.97457 * 180.02562 * 20 19 17 22 22 C 1.38128 * 120.04859 * 0.02562 * 20 19 17 23 23 C 1.38711 * 120.02987 * 99.40885 * 16 13 4 24 24 O 1.35895 * 120.05777 * 359.97438 * 23 16 13 25 25 C 1.42901 * 117.00462 * 179.72765 * 24 23 16 26 26 H 1.08995 * 109.46998 * 60.00201 * 1 2 3 27 27 H 1.09000 * 109.46875 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47023 * 299.99560 * 1 2 3 29 29 H 1.08997 * 109.47407 * 240.00060 * 2 1 3 30 30 H 1.09004 * 109.47208 * 119.99860 * 2 1 3 31 31 H 1.09005 * 109.47187 * 59.99814 * 3 2 1 32 32 H 1.09003 * 109.47403 * 300.00298 * 3 2 1 33 33 H 0.96994 * 119.99950 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47584 * 278.23025 * 18 17 16 35 35 H 1.09005 * 109.47454 * 38.23401 * 18 17 16 36 36 H 1.09006 * 109.47369 * 158.23056 * 18 17 16 37 37 H 1.08008 * 119.94429 * 179.69876 * 19 17 16 38 38 H 1.09004 * 109.47032 * 269.97297 * 21 20 19 39 39 H 1.08994 * 109.47671 * 29.97122 * 21 20 19 40 40 H 1.09002 * 109.46984 * 149.97935 * 21 20 19 41 41 H 1.07999 * 120.02175 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.47335 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.46535 * 60.00481 * 25 24 23 44 44 H 1.08995 * 109.47115 * 300.00362 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 0.9232 -1.0653 6 1 5.2524 0.7442 -0.9890 7 6 3.5193 0.6270 -2.2439 8 7 2.3369 1.1556 -2.4789 9 14 4.2944 -0.5217 -3.4965 10 1 4.5275 -1.8492 -2.8730 11 1 3.3828 -0.6744 -4.6588 12 1 5.5888 0.0448 -3.9532 13 16 4.3325 2.0705 1.2903 14 8 3.3954 2.8383 2.0329 15 8 5.5393 2.6097 0.7686 16 6 4.7962 0.7187 2.3208 17 6 3.8776 0.1676 3.1935 18 6 2.4787 0.7238 3.2640 19 6 4.2425 -0.8890 4.0067 20 6 5.5254 -1.4015 3.9444 21 6 5.9198 -2.5538 4.8319 22 6 6.4456 -0.8581 3.0693 23 6 6.0818 0.2024 2.2519 24 8 6.9851 0.7381 1.3895 25 6 8.2918 0.1598 1.3766 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.8680 0.9483 -3.3023 34 1 2.4711 1.6086 3.9004 35 1 2.1440 0.9937 2.2624 36 1 1.8090 -0.0289 3.6803 37 1 3.5244 -1.3152 4.6916 38 1 6.3151 -2.1694 5.7722 39 1 5.0461 -3.1741 5.0317 40 1 6.6835 -3.1512 4.3339 41 1 7.4473 -1.2590 3.0207 42 1 8.9120 0.6797 0.6464 43 1 8.2200 -0.8941 1.1081 44 1 8.7402 0.2532 2.3657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278538258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:15 Heat of formation + Delta-G solvation = -91.802183 kcal Electronic energy + Delta-G solvation = -28249.910022 eV Core-core repulsion = 24487.705655 eV Total energy + Delta-G solvation = -3762.204367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.28051 -39.06083 -38.18203 -37.82718 -36.55468 -34.66029 -33.69958 -32.77939 -32.11749 -28.88266 -28.25050 -27.60387 -27.30148 -25.38226 -23.02862 -22.19061 -21.90350 -20.30974 -19.32772 -18.58183 -18.33897 -17.90332 -17.49144 -16.73807 -16.32890 -16.05616 -15.56958 -15.41169 -15.10423 -14.91170 -14.80961 -14.70642 -14.27191 -14.06487 -13.61423 -13.53602 -13.27296 -13.15464 -13.10923 -13.02033 -12.95003 -12.83194 -12.66294 -12.62859 -12.43435 -12.32760 -12.21407 -12.12347 -11.92662 -11.73126 -11.63636 -11.33702 -11.20461 -10.82834 -9.97449 -9.66357 -9.27600 -7.85823 -5.69377 -0.24698 -0.01512 0.38233 1.47146 1.47546 1.54893 2.26279 2.31541 2.48861 2.76997 3.00911 3.33223 3.53224 3.74232 3.81888 4.10241 4.26393 4.28532 4.30634 4.34237 4.41429 4.51366 4.54751 4.65713 4.67595 4.71218 4.73710 4.78424 4.79803 4.83413 5.02987 5.15455 5.18262 5.21461 5.28645 5.35026 5.38163 5.48386 5.49156 5.69237 5.80522 5.92059 6.15810 6.33073 6.70641 7.18577 7.54259 9.00043 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.006516 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.185704 B = 4296.020930 C = 4980.090813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.117 3.883 4 N -0.860 5.860 5 C -0.320 4.320 6 H 0.085 0.915 7 C 0.005 3.995 8 N -0.893 5.893 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.277 1.277 13 S 2.677 3.323 14 O -1.001 7.001 15 O -0.991 6.991 16 C -0.738 4.738 17 C 0.044 3.956 18 C -0.151 4.151 19 C -0.189 4.189 20 C 0.005 3.995 21 C -0.115 4.115 22 C -0.247 4.247 23 C 0.208 3.792 24 O -0.319 6.319 25 C 0.011 3.989 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.262 0.738 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.161 0.839 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.161 0.839 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -9.909 12.930 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C -0.008 4.008 4 N -0.692 5.692 5 C -0.450 4.450 6 H 0.102 0.898 7 C -0.196 4.196 8 N -0.535 5.535 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.203 1.203 13 S 2.771 3.229 14 O -0.991 6.991 15 O -0.981 6.981 16 C -0.827 4.827 17 C 0.043 3.957 18 C -0.207 4.207 19 C -0.208 4.208 20 C 0.004 3.996 21 C -0.171 4.171 22 C -0.266 4.266 23 C 0.159 3.841 24 O -0.231 6.231 25 C -0.083 4.083 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.178 0.822 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.178 0.822 42 H 0.130 0.870 43 H 0.091 0.909 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.012 -8.840 12.793 16.060 hybrid contribution 0.685 -0.943 -0.856 1.447 sum 4.698 -9.784 11.937 16.133 Atomic orbital electron populations 1.21593 0.94781 1.01387 1.01532 1.21679 0.95974 0.97427 1.00358 1.21737 0.78838 0.98073 1.02162 1.52934 1.13190 1.75740 1.27357 1.19084 0.93337 1.40894 0.91690 0.89756 1.25463 0.96735 0.99152 0.98276 1.69957 1.15498 1.42555 1.25441 0.85527 0.78142 0.79528 0.78378 1.19941 1.20448 1.20308 1.01785 0.72549 0.75535 0.73055 1.93432 1.63262 1.69555 1.72879 1.93446 1.47693 1.77765 1.79185 1.30264 1.01219 1.28587 1.22633 1.19638 0.94204 0.92080 0.89779 1.21524 0.91734 1.02765 1.04706 1.21264 0.97810 0.98782 1.02913 1.20425 0.92203 0.94472 0.92480 1.20992 1.03533 0.94125 0.98491 1.21447 1.02935 1.00165 1.02039 1.18703 0.87741 0.90358 0.87319 1.86460 1.23204 1.57189 1.56227 1.23489 0.80423 1.00050 1.04380 0.93472 0.92218 0.92119 0.93027 0.94018 0.92470 0.87714 0.92779 0.89005 0.91191 0.87603 0.82191 0.88700 0.89372 0.89897 0.82188 0.87014 0.90937 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.91 71.98 0.71 -3.89 16 2 C -0.11 -4.86 5.20 30.59 0.16 -4.70 16 3 C 0.12 5.61 4.16 86.38 0.36 5.97 16 4 N -0.86 -44.65 3.05 -343.45 -1.05 -45.70 16 5 C -0.32 -17.70 9.04 84.03 0.76 -16.94 16 6 H 0.08 4.79 7.67 -2.91 -0.02 4.76 16 7 C 0.00 0.26 3.95 84.86 0.34 0.60 16 8 N -0.89 -47.68 9.27 21.65 0.20 -47.48 16 9 Si 0.96 42.88 29.59 68.60 2.03 44.91 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 S 2.68 133.13 5.08 -56.49 -0.29 132.84 16 14 O -1.00 -49.47 13.63 -128.00 -1.75 -51.21 16 15 O -0.99 -55.04 14.92 -119.11 -1.78 -56.81 16 16 C -0.74 -31.16 5.97 22.37 0.13 -31.02 16 17 C 0.04 1.57 5.87 -19.88 -0.12 1.45 16 18 C -0.15 -4.94 8.07 71.24 0.58 -4.37 16 19 C -0.19 -5.16 9.32 22.28 0.21 -4.95 16 20 C 0.00 0.11 5.88 -19.88 -0.12 0.00 16 21 C -0.12 -1.64 10.01 71.23 0.71 -0.93 16 22 C -0.25 -7.11 8.69 22.37 0.19 -6.91 16 23 C 0.21 8.03 6.65 22.51 0.15 8.18 16 24 O -0.32 -12.89 8.10 -70.69 -0.57 -13.46 16 25 C 0.01 0.28 9.81 113.37 1.11 1.39 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 2.46 5.93 -2.39 -0.01 2.45 16 30 H 0.04 1.66 7.08 -2.39 -0.02 1.64 16 31 H 0.06 2.58 5.29 -2.38 -0.01 2.57 16 32 H 0.11 5.55 5.63 -2.39 -0.01 5.54 16 33 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.09 2.98 7.71 -2.39 -0.02 2.97 16 35 H 0.07 2.62 2.46 -2.38 -0.01 2.61 16 36 H 0.11 2.57 8.03 -2.38 -0.02 2.56 16 37 H 0.16 3.14 8.05 -2.91 -0.02 3.12 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 41 H 0.16 3.42 6.30 -2.91 -0.02 3.41 16 42 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.07 1.60 7.66 -2.39 -0.02 1.58 16 44 H 0.08 1.60 7.66 -2.39 -0.02 1.58 16 Total: -1.00 -72.12 352.17 2.99 -69.13 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.01 Total: 23.91 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 5.18 Total: -56.12 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -0.85 Total: -93.18 kcal Atomic # 8 Polarization: -117.40 SS G_CDS: -4.09 Total: -121.49 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 133.13 SS G_CDS: -0.29 Total: 132.84 kcal Total: -72.12 2.99 -69.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278538258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.675 kcal (2) G-P(sol) polarization free energy of solvation -72.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds