Wall clock time and date at job start Tue Mar 31 2020 14:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46886 * 130.68500 * 3 2 1 5 5 C 1.36935 * 119.99785 * 267.33879 * 4 3 2 6 6 H 1.07993 * 120.00611 * 321.83238 * 5 4 3 7 7 C 1.38814 * 119.99732 * 141.82799 * 5 4 3 8 8 N 1.31618 * 120.00272 * 156.70977 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 336.70831 * 7 5 4 10 10 H 1.48501 * 109.47021 * 95.59572 * 9 7 5 11 11 H 1.48496 * 109.47363 * 215.59649 * 9 7 5 12 12 H 1.48501 * 109.47182 * 335.59984 * 9 7 5 13 13 C 1.46498 * 119.99944 * 87.34607 * 4 3 2 14 14 C 1.53004 * 109.47163 * 89.99882 * 13 4 3 15 15 O 1.42892 * 109.47260 * 64.99711 * 14 13 4 16 16 C 1.35743 * 117.00037 * 179.97438 * 15 14 13 17 17 C 1.39376 * 119.73027 * 0.02562 * 16 15 14 18 18 C 1.36459 * 120.43213 * 180.02562 * 17 16 15 19 19 C 1.39965 * 119.79328 * 0.02562 * 18 17 16 20 20 C 1.46442 * 120.98672 * 180.02562 * 19 18 17 21 21 C 1.50698 * 120.89962 * 359.97438 * 20 19 18 22 22 C 1.35844 * 118.19596 * 179.97438 * 20 19 18 23 23 C 1.41008 * 119.82220 * 359.97438 * 22 20 19 24 24 O 1.21796 * 119.15211 * 180.02562 * 23 22 20 25 25 O 1.34220 * 121.68656 * 359.71585 * 23 22 20 26 26 C 1.35021 * 121.46818 * 0.57720 * 25 23 22 27 27 C 1.38518 * 119.72760 * 180.02562 * 16 15 14 28 28 H 4.40643 * 5.51403 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47277 * 10.68430 * 3 2 1 30 30 H 1.08997 * 109.47340 * 250.68616 * 3 2 1 31 31 H 0.96996 * 120.00281 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.46995 * 329.99580 * 13 4 3 33 33 H 1.08999 * 109.47011 * 209.99412 * 13 4 3 34 34 H 1.09002 * 109.46862 * 304.99548 * 14 13 4 35 35 H 1.08999 * 109.46966 * 185.00459 * 14 13 4 36 36 H 1.08001 * 119.78083 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.10002 * 179.97438 * 18 17 16 38 38 H 1.09004 * 109.46939 * 90.00411 * 21 20 19 39 39 H 1.09004 * 109.46950 * 210.00455 * 21 20 19 40 40 H 1.09004 * 109.47607 * 330.00138 * 21 20 19 41 41 H 1.07995 * 120.08699 * 179.97438 * 22 20 19 42 42 H 1.07997 * 120.11212 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9013 -1.0474 5 6 3.4142 0.4120 -2.2952 6 1 3.8733 -0.5595 -2.4038 7 6 3.1082 1.1646 -3.4208 8 7 3.7517 0.9527 -4.5492 9 14 1.7831 2.4783 -3.3339 10 1 2.4111 3.7984 -3.0730 11 1 1.0481 2.5261 -4.6234 12 1 0.8366 2.1549 -2.2363 13 6 3.3220 2.3254 -0.7598 14 6 4.7462 2.5594 -0.2518 15 8 5.6785 2.2574 -1.2918 16 6 6.9956 2.4142 -1.0034 17 6 7.3785 2.8518 0.2632 18 6 8.6985 3.0149 0.5685 19 6 9.6744 2.7414 -0.3969 20 6 11.0983 2.9069 -0.0974 21 6 11.5541 3.3773 1.2598 22 6 11.9970 2.6248 -1.0761 23 6 11.5453 2.1857 -2.3377 24 8 12.3618 1.9358 -3.2062 25 8 10.2390 2.0302 -2.6038 26 6 9.2941 2.2987 -1.6774 27 6 7.9481 2.1379 -1.9704 28 1 -1.0501 -0.0003 0.0001 29 1 3.0099 -1.0090 -0.1905 30 1 3.0093 0.3407 0.9698 31 1 3.5377 1.4783 -5.3357 32 1 2.6084 2.6395 0.0019 33 1 3.1611 2.9041 -1.6693 34 1 4.9367 1.9139 0.6056 35 1 4.8591 3.6018 0.0460 36 1 6.6255 3.0641 1.0078 37 1 8.9891 3.3547 1.5515 38 1 11.7094 2.5160 1.9096 39 1 12.4886 3.9291 1.1581 40 1 10.7939 4.0272 1.6934 41 1 13.0547 2.7366 -0.8886 42 1 7.6436 1.7996 -2.9498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281209520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:24 Heat of formation + Delta-G solvation = 21.453057 kcal Electronic energy + Delta-G solvation = -26924.408077 eV Core-core repulsion = 23031.670874 eV Total energy + Delta-G solvation = -3892.737202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83735 -39.77981 -38.06343 -36.98201 -36.29408 -35.02539 -32.60395 -31.64061 -30.95361 -29.63711 -29.07970 -28.58502 -26.48991 -24.59526 -23.33766 -23.20686 -21.94546 -21.21290 -19.48801 -18.28271 -17.61218 -17.38590 -16.95813 -16.70835 -16.66392 -15.85765 -15.30995 -15.04510 -14.95936 -14.35981 -14.07721 -13.90459 -13.86298 -13.83083 -13.69366 -13.29249 -13.12168 -12.84774 -12.71013 -12.38650 -12.20114 -11.96408 -11.77096 -11.71071 -11.28653 -11.03501 -10.96997 -10.60612 -10.26268 -10.00553 -9.79887 -9.77890 -9.63341 -9.44966 -8.79177 -8.56720 -7.93143 -7.10786 -6.03769 -3.48729 0.24395 1.05894 1.58784 2.37537 2.85462 3.23273 3.41555 3.42685 3.48826 3.50689 3.57995 3.70561 4.13020 4.14623 4.29423 4.47149 4.67477 4.81123 4.86074 5.01236 5.07048 5.10948 5.13477 5.26210 5.30912 5.39059 5.46700 5.56263 5.62162 5.68607 5.74708 5.81952 5.93640 6.05757 6.07165 6.16604 6.27124 6.34692 6.41121 6.45781 6.63341 7.24461 7.54060 7.65059 7.93873 8.27400 8.33696 8.84018 9.62340 9.94549 11.10921 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.003161 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.586742 B = 8854.939968 C = 9778.858382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.170 4.170 3 C 0.237 3.763 4 N -0.588 5.588 5 C -0.268 4.268 6 H 0.082 0.918 7 C 0.051 3.949 8 N -0.886 5.886 9 Si 0.862 3.138 10 H -0.285 1.285 11 H -0.299 1.299 12 H -0.265 1.265 13 C 0.133 3.867 14 C 0.041 3.959 15 O -0.252 6.252 16 C 0.207 3.793 17 C -0.234 4.234 18 C -0.017 4.017 19 C -0.213 4.213 20 C 0.049 3.951 21 C -0.127 4.127 22 C -0.282 4.282 23 C 0.513 3.487 24 O -0.477 6.477 25 O -0.269 6.269 26 C 0.191 3.809 27 C -0.178 4.178 28 H 0.203 0.797 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.157 0.843 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.398 6.656 16.309 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.172 4.172 3 C 0.112 3.888 4 N -0.309 5.309 5 C -0.396 4.396 6 H 0.100 0.900 7 C -0.151 4.151 8 N -0.526 5.526 9 Si 0.692 3.308 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.189 1.189 13 C 0.007 3.993 14 C -0.037 4.037 15 O -0.162 6.162 16 C 0.158 3.842 17 C -0.253 4.253 18 C -0.035 4.035 19 C -0.214 4.214 20 C 0.048 3.952 21 C -0.183 4.183 22 C -0.301 4.301 23 C 0.363 3.637 24 O -0.366 6.366 25 O -0.180 6.180 26 C 0.146 3.854 27 C -0.197 4.197 28 H 0.220 0.780 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.175 0.825 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.677 6.421 15.312 19.218 hybrid contribution -1.072 0.933 0.087 1.423 sum 8.605 7.354 15.399 19.112 Atomic orbital electron populations 1.24721 0.95838 1.03408 1.03681 1.25195 0.96258 0.98103 0.97689 1.18289 0.81685 0.96523 0.92333 1.44182 1.73320 1.03063 1.10293 1.18660 1.35093 1.05653 0.80159 0.90014 1.25392 0.96919 0.97713 0.95101 1.69859 1.39235 1.41471 1.01991 0.87170 0.84617 0.81806 0.77220 1.21356 1.22690 1.18918 1.21383 0.90499 0.87421 1.00041 1.23883 0.91349 0.98417 0.90054 1.86565 1.10758 1.79473 1.39372 1.19092 0.85601 0.88220 0.91335 1.21111 0.97424 1.09535 0.97244 1.20575 0.91316 0.93894 0.97684 1.18784 0.93417 1.14369 0.94857 1.21469 0.91071 0.87102 0.95556 1.20998 1.02616 1.02277 0.92433 1.22220 1.01891 1.12615 0.93422 1.19150 0.78857 0.76661 0.89046 1.90956 1.46963 1.48983 1.49711 1.83563 1.17704 1.73552 1.43198 1.18567 0.87345 0.93770 0.85691 1.19646 0.87297 1.10183 1.02570 0.78026 0.89988 0.91836 0.92623 0.91482 0.91410 0.92060 0.92824 0.84383 0.84537 0.89253 0.90057 0.90142 0.82540 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.55 19.25 29.55 0.57 -3.98 16 2 C -0.17 -3.23 13.68 -37.12 -0.51 -3.73 16 3 C 0.24 4.29 6.14 -6.83 -0.04 4.25 16 4 N -0.59 -12.65 2.00 -176.58 -0.35 -13.00 16 5 C -0.27 -7.01 9.39 -15.06 -0.14 -7.15 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.05 1.41 5.28 -17.43 -0.09 1.31 16 8 N -0.89 -26.21 13.97 55.49 0.78 -25.44 16 9 Si 0.86 21.34 25.14 -169.99 -4.27 17.06 16 10 H -0.29 -6.80 6.67 56.52 0.38 -6.42 16 11 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.13 2.51 4.96 -4.04 -0.02 2.49 16 14 C 0.04 0.63 5.07 37.16 0.19 0.82 16 15 O -0.25 -4.78 9.59 -18.94 -0.18 -4.96 16 16 C 0.21 3.30 6.69 -39.05 -0.26 3.03 16 17 C -0.23 -2.79 8.96 -39.80 -0.36 -3.15 16 18 C -0.02 -0.17 9.36 -39.58 -0.37 -0.54 16 19 C -0.21 -2.59 5.87 -105.01 -0.62 -3.21 16 20 C 0.05 0.49 6.08 -102.18 -0.62 -0.13 16 21 C -0.13 -0.71 9.64 36.00 0.35 -0.36 16 22 C -0.28 -3.27 9.62 -39.39 -0.38 -3.65 16 23 C 0.51 8.09 7.89 31.78 0.25 8.35 16 24 O -0.48 -8.87 17.91 -19.60 -0.35 -9.22 16 25 O -0.27 -4.53 9.82 -20.78 -0.20 -4.73 16 26 C 0.19 2.93 6.76 -38.48 -0.26 2.67 16 27 C -0.18 -2.97 9.94 -39.31 -0.39 -3.36 16 28 H 0.20 2.81 7.80 -54.08 -0.42 2.39 16 29 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 30 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.07 1.47 3.43 -51.93 -0.18 1.30 16 34 H 0.06 0.82 7.64 -51.93 -0.40 0.42 16 35 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 36 H 0.14 1.33 6.24 -52.49 -0.33 1.00 16 37 H 0.14 0.87 6.52 -52.49 -0.34 0.53 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 40 H 0.08 0.35 6.62 -51.93 -0.34 0.01 16 41 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.16 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -33.57 362.70 -6.76 -40.33 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.93 Total: 0.85 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.70 Total: -6.36 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.42 Total: -38.44 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.74 Total: -18.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.27 Total: 17.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.57 -6.76 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281209520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.784 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds