Wall clock time and date at job start Tue Mar 31 2020 14:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46886 * 130.68500 * 3 2 1 5 5 C 1.36935 * 119.99785 * 267.33879 * 4 3 2 6 6 H 1.07993 * 120.00611 * 321.83238 * 5 4 3 7 7 C 1.38814 * 119.99732 * 141.82799 * 5 4 3 8 8 N 1.31618 * 120.00272 * 156.70977 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 336.70831 * 7 5 4 10 10 H 1.48501 * 109.47021 * 95.59572 * 9 7 5 11 11 H 1.48496 * 109.47363 * 215.59649 * 9 7 5 12 12 H 1.48501 * 109.47182 * 335.59984 * 9 7 5 13 13 C 1.46498 * 119.99944 * 87.34607 * 4 3 2 14 14 C 1.53004 * 109.47163 * 89.99882 * 13 4 3 15 15 O 1.42892 * 109.47260 * 64.99711 * 14 13 4 16 16 C 1.35743 * 117.00037 * 179.97438 * 15 14 13 17 17 C 1.39376 * 119.73027 * 0.02562 * 16 15 14 18 18 C 1.36459 * 120.43213 * 180.02562 * 17 16 15 19 19 C 1.39965 * 119.79328 * 0.02562 * 18 17 16 20 20 C 1.46442 * 120.98672 * 180.02562 * 19 18 17 21 21 C 1.50698 * 120.89962 * 359.97438 * 20 19 18 22 22 C 1.35844 * 118.19596 * 179.97438 * 20 19 18 23 23 C 1.41008 * 119.82220 * 359.97438 * 22 20 19 24 24 O 1.21796 * 119.15211 * 180.02562 * 23 22 20 25 25 O 1.34220 * 121.68656 * 359.71585 * 23 22 20 26 26 C 1.35021 * 121.46818 * 0.57720 * 25 23 22 27 27 C 1.38518 * 119.72760 * 180.02562 * 16 15 14 28 28 H 4.40643 * 5.51403 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47277 * 10.68430 * 3 2 1 30 30 H 1.08997 * 109.47340 * 250.68616 * 3 2 1 31 31 H 0.96996 * 120.00281 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.46995 * 329.99580 * 13 4 3 33 33 H 1.08999 * 109.47011 * 209.99412 * 13 4 3 34 34 H 1.09002 * 109.46862 * 304.99548 * 14 13 4 35 35 H 1.08999 * 109.46966 * 185.00459 * 14 13 4 36 36 H 1.08001 * 119.78083 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.10002 * 179.97438 * 18 17 16 38 38 H 1.09004 * 109.46939 * 90.00411 * 21 20 19 39 39 H 1.09004 * 109.46950 * 210.00455 * 21 20 19 40 40 H 1.09004 * 109.47607 * 330.00138 * 21 20 19 41 41 H 1.07995 * 120.08699 * 179.97438 * 22 20 19 42 42 H 1.07997 * 120.11212 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9013 -1.0474 5 6 3.4142 0.4120 -2.2952 6 1 3.8733 -0.5595 -2.4038 7 6 3.1082 1.1646 -3.4208 8 7 3.7517 0.9527 -4.5492 9 14 1.7831 2.4783 -3.3339 10 1 2.4111 3.7984 -3.0730 11 1 1.0481 2.5261 -4.6234 12 1 0.8366 2.1549 -2.2363 13 6 3.3220 2.3254 -0.7598 14 6 4.7462 2.5594 -0.2518 15 8 5.6785 2.2574 -1.2918 16 6 6.9956 2.4142 -1.0034 17 6 7.3785 2.8518 0.2632 18 6 8.6985 3.0149 0.5685 19 6 9.6744 2.7414 -0.3969 20 6 11.0983 2.9069 -0.0974 21 6 11.5541 3.3773 1.2598 22 6 11.9970 2.6248 -1.0761 23 6 11.5453 2.1857 -2.3377 24 8 12.3618 1.9358 -3.2062 25 8 10.2390 2.0302 -2.6038 26 6 9.2941 2.2987 -1.6774 27 6 7.9481 2.1379 -1.9704 28 1 -1.0501 -0.0003 0.0001 29 1 3.0099 -1.0090 -0.1905 30 1 3.0093 0.3407 0.9698 31 1 3.5377 1.4783 -5.3357 32 1 2.6084 2.6395 0.0019 33 1 3.1611 2.9041 -1.6693 34 1 4.9367 1.9139 0.6056 35 1 4.8591 3.6018 0.0460 36 1 6.6255 3.0641 1.0078 37 1 8.9891 3.3547 1.5515 38 1 11.7094 2.5160 1.9096 39 1 12.4886 3.9291 1.1581 40 1 10.7939 4.0272 1.6934 41 1 13.0547 2.7366 -0.8886 42 1 7.6436 1.7996 -2.9498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281209520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:24 Heat of formation + Delta-G solvation = 1.043624 kcal Electronic energy + Delta-G solvation = -26925.293096 eV Core-core repulsion = 23031.670874 eV Total energy + Delta-G solvation = -3893.622222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.98193 -40.97137 -39.31517 -38.26140 -37.66696 -36.02645 -34.27933 -33.34037 -32.09358 -30.91910 -29.98339 -29.52814 -28.17438 -25.87191 -24.62138 -24.33635 -23.18144 -22.60053 -20.61965 -19.27185 -19.02467 -18.88008 -18.40669 -17.93361 -17.88919 -17.39912 -16.63111 -16.49371 -16.01380 -15.83552 -15.28027 -15.08591 -15.01048 -14.91476 -14.62070 -14.48071 -14.29079 -14.23549 -14.04886 -13.61379 -13.35666 -13.25877 -12.98775 -12.91979 -12.55134 -12.52622 -12.30397 -12.00924 -11.78447 -11.53905 -11.39427 -11.23761 -10.84613 -10.69177 -10.55780 -9.91112 -9.02694 -8.91140 -8.16271 -5.56019 -0.72581 -0.02453 0.54428 1.22637 1.25460 1.39349 1.49254 1.78079 1.98986 2.10595 2.41820 2.42451 2.66335 3.08968 3.16018 3.32429 3.41528 3.51801 3.76392 3.82298 3.93897 4.12424 4.24863 4.26652 4.39829 4.43349 4.45434 4.54295 4.69943 4.74130 4.76443 4.84647 4.87846 4.89416 4.99683 5.03895 5.18286 5.25124 5.29673 5.34126 5.46599 5.94348 6.09410 6.19811 6.39032 6.53325 6.89655 6.99953 7.62144 7.99394 9.03367 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.003161 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.586742 B = 8854.939968 C = 9778.858382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.210 4.210 3 C 0.237 3.763 4 N -0.601 5.601 5 C -0.241 4.241 6 H 0.038 0.962 7 C -0.007 4.007 8 N -0.944 5.944 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.317 1.317 12 H -0.254 1.254 13 C 0.123 3.877 14 C 0.040 3.960 15 O -0.303 6.303 16 C 0.192 3.808 17 C -0.222 4.222 18 C 0.010 3.990 19 C -0.212 4.212 20 C 0.079 3.921 21 C -0.127 4.127 22 C -0.299 4.299 23 C 0.500 3.500 24 O -0.526 6.526 25 O -0.302 6.302 26 C 0.170 3.830 27 C -0.215 4.215 28 H 0.235 0.765 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.258 0.742 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.176 0.824 37 H 0.197 0.803 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.182 0.818 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.145 9.108 22.692 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.213 4.213 3 C 0.113 3.887 4 N -0.322 5.322 5 C -0.371 4.371 6 H 0.056 0.944 7 C -0.204 4.204 8 N -0.588 5.588 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.246 1.246 12 H -0.178 1.178 13 C -0.002 4.002 14 C -0.036 4.036 15 O -0.214 6.214 16 C 0.143 3.857 17 C -0.240 4.240 18 C -0.007 4.007 19 C -0.213 4.213 20 C 0.078 3.922 21 C -0.182 4.182 22 C -0.317 4.317 23 C 0.354 3.646 24 O -0.420 6.420 25 O -0.214 6.214 26 C 0.125 3.875 27 C -0.235 4.235 28 H 0.251 0.749 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.193 0.807 37 H 0.214 0.786 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.200 0.800 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.400 8.893 21.776 25.331 hybrid contribution -1.017 0.085 -1.755 2.030 sum 8.384 8.978 20.021 23.489 Atomic orbital electron populations 1.25576 0.96869 1.01676 1.02028 1.25412 0.96983 0.99665 0.99203 1.18377 0.81752 0.95599 0.93010 1.44211 1.74199 1.04712 1.09086 1.18438 1.32471 1.03607 0.82552 0.94387 1.25939 0.99068 1.00592 0.94829 1.70019 1.41737 1.44022 1.02984 0.86098 0.81788 0.80093 0.76233 1.20027 1.24631 1.17810 1.21536 0.93811 0.85036 0.99797 1.23898 0.88634 1.01460 0.89650 1.86480 1.12528 1.80663 1.41751 1.19230 0.84130 0.89418 0.92905 1.21460 0.99235 1.07804 0.95507 1.21208 0.89726 0.90773 0.99018 1.19204 0.95629 1.13043 0.93470 1.21943 0.89109 0.83980 0.97206 1.21240 1.04218 1.03606 0.89136 1.22285 1.03550 1.14200 0.91708 1.19954 0.77998 0.76209 0.90409 1.90907 1.47799 1.51787 1.51487 1.83465 1.18863 1.73980 1.45084 1.18778 0.86315 0.95181 0.87196 1.19518 0.89084 1.13077 1.01777 0.74866 0.90957 0.87405 0.93325 0.87927 0.94628 0.89231 0.88828 0.80700 0.78632 0.86923 0.88240 0.87574 0.80044 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -7.82 19.25 74.32 1.43 -6.39 16 2 C -0.21 -7.48 13.68 31.13 0.43 -7.06 16 3 C 0.24 8.13 6.14 84.57 0.52 8.65 16 4 N -0.60 -25.38 2.00 -712.57 -1.42 -26.81 16 5 C -0.24 -13.16 9.39 84.03 0.79 -12.37 16 6 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 7 C -0.01 -0.43 5.28 84.86 0.45 0.02 16 8 N -0.94 -59.99 13.97 21.65 0.30 -59.69 16 9 Si 0.93 45.70 25.14 68.60 1.72 47.43 16 10 H -0.27 -12.67 6.67 99.48 0.66 -12.01 16 11 H -0.32 -16.31 7.11 99.48 0.71 -15.60 16 12 H -0.25 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.12 4.35 4.96 86.38 0.43 4.78 16 14 C 0.04 1.11 5.07 71.98 0.37 1.47 16 15 O -0.30 -11.61 9.59 -90.68 -0.87 -12.48 16 16 C 0.19 6.10 6.69 22.61 0.15 6.25 16 17 C -0.22 -4.32 8.96 22.13 0.20 -4.12 16 18 C 0.01 0.15 9.36 22.27 0.21 0.35 16 19 C -0.21 -4.60 5.87 -20.11 -0.12 -4.72 16 20 C 0.08 1.26 6.08 -18.28 -0.11 1.15 16 21 C -0.13 -0.54 9.64 71.24 0.69 0.14 16 22 C -0.30 -6.55 9.62 22.39 0.22 -6.33 16 23 C 0.50 16.84 7.89 68.50 0.54 17.38 16 24 O -0.53 -21.27 17.91 18.96 0.34 -20.93 16 25 O -0.30 -11.26 9.82 14.73 0.14 -11.11 16 26 C 0.17 5.48 6.76 22.99 0.16 5.64 16 27 C -0.21 -7.92 9.94 22.44 0.22 -7.70 16 28 H 0.23 5.56 7.80 -4.41 -0.03 5.53 16 29 H 0.07 2.58 8.02 -2.39 -0.02 2.56 16 30 H 0.11 2.71 8.09 -2.39 -0.02 2.69 16 31 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 32 H 0.10 2.87 8.07 -2.39 -0.02 2.85 16 33 H 0.04 1.50 3.43 -2.39 -0.01 1.49 16 34 H 0.09 1.96 7.64 -2.39 -0.02 1.94 16 35 H 0.09 1.85 7.64 -2.39 -0.02 1.83 16 36 H 0.18 2.13 6.24 -2.91 -0.02 2.11 16 37 H 0.20 0.66 6.52 -2.91 -0.02 0.64 16 38 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 39 H 0.10 0.21 8.10 -2.39 -0.02 0.19 16 40 H 0.11 0.01 6.62 -2.38 -0.02 -0.01 16 41 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -85.80 362.70 7.78 -78.02 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.01 Total: 8.41 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 6.56 Total: -2.84 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -1.12 Total: -86.50 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.39 Total: -44.51 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.72 Total: 47.43 kcal Total: -85.80 7.78 -78.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281209520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.062 kcal (2) G-P(sol) polarization free energy of solvation -85.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds