Wall clock time and date at job start Tue Mar 31 2020 15:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46726 * 177.51132 * 3 2 1 5 5 C 1.37100 * 119.99745 * 95.91001 * 4 3 2 6 6 H 1.07999 * 119.99675 * 162.55556 * 5 4 3 7 7 C 1.38950 * 120.00106 * 342.54602 * 5 4 3 8 8 N 1.31404 * 120.00242 * 337.00785 * 7 5 4 9 9 Si 1.86797 * 119.99805 * 157.00499 * 7 5 4 10 10 H 1.48499 * 109.47427 * 90.00011 * 9 7 5 11 11 H 1.48504 * 109.47410 * 210.00296 * 9 7 5 12 12 H 1.48503 * 109.47209 * 330.00342 * 9 7 5 13 13 C 1.34771 * 119.99842 * 276.17757 * 4 3 2 14 14 O 1.21299 * 120.00173 * 179.72187 * 13 4 3 15 15 C 1.50704 * 120.00318 * 359.73187 * 13 4 3 16 16 H 1.09000 * 115.54775 * 325.66888 * 15 13 4 17 17 C 1.52994 * 117.49884 * 111.37160 * 15 13 4 18 18 C 1.52996 * 117.49961 * 179.97438 * 15 13 4 19 19 H 1.08994 * 117.50086 * 145.01839 * 18 15 13 20 20 C 1.50701 * 117.50051 * 359.97438 * 18 15 13 21 21 C 1.38250 * 119.94058 * 299.72764 * 20 18 15 22 22 C 1.38207 * 120.11064 * 179.77517 * 21 20 18 23 23 C 1.38699 * 120.06441 * 0.56524 * 22 21 20 24 24 C 1.38972 * 119.82215 * 359.62209 * 23 22 21 25 25 C 1.38197 * 119.94521 * 120.00069 * 20 18 15 26 26 O 1.36108 * 120.78511 * 180.26539 * 24 23 22 27 27 C 1.43167 * 116.71406 * 342.81685 * 26 24 23 28 28 C 1.53467 * 108.25577 * 46.16207 * 27 26 24 29 29 O 1.36106 * 119.39604 * 179.53782 * 23 22 21 30 30 H 4.40637 * 5.51433 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47397 * 57.51233 * 3 2 1 32 32 H 1.08996 * 109.47070 * 297.51085 * 3 2 1 33 33 H 0.96993 * 120.00042 * 179.97438 * 8 7 5 34 34 H 1.09003 * 117.50241 * 214.97553 * 17 15 13 35 35 H 1.08999 * 117.50291 * 0.02562 * 17 15 13 36 36 H 1.08000 * 119.94852 * 0.03016 * 21 20 18 37 37 H 1.08000 * 119.96496 * 180.28988 * 22 21 20 38 38 H 1.07998 * 119.96349 * 359.94633 * 25 20 18 39 39 H 1.09010 * 109.70662 * 165.85030 * 27 26 24 40 40 H 1.08997 * 109.71016 * 286.42782 * 27 26 24 41 41 H 1.09005 * 109.70815 * 59.94349 * 28 27 26 42 42 H 1.08994 * 109.71673 * 180.53494 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3808 -0.0600 5 6 3.4771 2.0372 1.0937 6 1 4.0893 2.9258 1.0475 7 6 3.0374 1.5594 2.3221 8 7 1.9693 0.7966 2.3863 9 14 3.9647 2.0013 3.8823 10 1 3.4081 3.2551 4.4507 11 1 3.8212 0.9029 4.8714 12 1 5.4022 2.1971 3.5651 13 6 3.2396 2.0070 -1.2487 14 8 3.6385 3.1515 -1.2979 15 6 2.8621 1.2855 -2.5168 16 1 3.0741 0.2164 -2.5302 17 6 1.6147 1.7682 -3.2596 18 6 3.0039 2.0508 -3.8340 19 1 3.3092 1.4852 -4.7143 20 6 3.5099 3.4686 -3.7641 21 6 2.8060 4.4178 -3.0464 22 6 3.2693 5.7180 -2.9761 23 6 4.4358 6.0766 -3.6353 24 6 5.1412 5.1233 -4.3598 25 6 4.6736 3.8190 -4.4220 26 8 6.2909 5.4525 -5.0097 27 6 6.5280 6.8468 -5.2319 28 6 6.2403 7.5977 -3.9247 29 8 4.8745 7.3631 -3.5646 30 1 -1.0502 -0.0004 -0.0002 31 1 3.0097 -0.5511 -0.8668 32 1 3.0096 -0.4739 0.9114 33 1 1.6626 0.4628 3.2438 34 1 1.0057 1.0166 -3.7621 35 1 1.0673 2.6079 -2.8315 36 1 1.8949 4.1419 -2.5365 37 1 2.7201 6.4565 -2.4110 38 1 5.2196 3.0764 -4.9848 39 1 7.5671 7.0011 -5.5233 40 1 5.8677 7.2112 -6.0188 41 1 6.8968 7.2287 -3.1367 42 1 6.4046 8.6653 -4.0701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281538500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:20 Heat of formation + Delta-G solvation = 33.098814 kcal Electronic energy + Delta-G solvation = -27870.024775 eV Core-core repulsion = 23977.792571 eV Total energy + Delta-G solvation = -3892.232204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.92893 -39.48254 -37.52545 -36.95046 -35.64710 -34.74749 -32.06852 -31.21640 -30.74268 -30.26589 -28.02773 -26.57372 -25.25888 -24.80121 -22.84264 -22.41335 -22.10997 -19.82087 -18.77349 -18.21746 -17.78122 -17.02167 -16.67727 -16.53482 -16.42007 -15.15147 -15.02986 -14.71155 -14.50963 -14.24517 -14.16503 -13.86930 -13.73246 -13.44883 -13.29379 -12.77767 -12.55586 -12.37510 -12.19011 -11.88879 -11.66135 -11.31441 -11.22141 -11.05335 -10.96156 -10.87140 -10.54151 -10.33876 -10.17246 -9.97724 -9.77947 -9.33365 -9.21207 -8.87380 -8.41558 -8.08142 -7.80186 -7.17537 -6.33480 -3.83061 1.75563 1.90263 3.13716 3.25447 3.25906 3.31526 3.43971 3.57288 3.79932 4.06245 4.18453 4.22947 4.35603 4.54802 4.80788 4.84041 4.91522 5.01144 5.02069 5.15672 5.28017 5.33391 5.40746 5.46529 5.47649 5.61089 5.73676 5.77704 5.81272 5.95338 6.06118 6.24197 6.34994 6.38891 6.43445 6.61326 6.66373 6.74620 7.04051 7.09346 7.19048 7.22598 7.56979 7.79352 8.07891 8.44696 8.83993 9.16244 9.38255 9.96280 10.67128 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003928 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.629524 B = 7126.825572 C = 8395.078683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.109 4.109 3 C 0.232 3.768 4 N -0.435 5.435 5 C -0.313 4.313 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.859 5.859 9 Si 0.916 3.084 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.472 3.528 14 O -0.560 6.560 15 C -0.159 4.159 16 H 0.113 0.887 17 C -0.148 4.148 18 C -0.094 4.094 19 H 0.113 0.887 20 C -0.025 4.025 21 C -0.030 4.030 22 C -0.120 4.120 23 C 0.043 3.957 24 C 0.032 3.968 25 C -0.109 4.109 26 O -0.312 6.312 27 C 0.023 3.977 28 C 0.021 3.979 29 O -0.313 6.313 30 H 0.198 0.802 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.267 0.733 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 3.742 -13.116 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.111 4.111 3 C 0.109 3.891 4 N -0.152 5.152 5 C -0.440 4.440 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.497 5.497 9 Si 0.742 3.258 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.261 3.739 14 O -0.444 6.444 15 C -0.181 4.181 16 H 0.131 0.869 17 C -0.186 4.186 18 C -0.112 4.112 19 H 0.131 0.869 20 C -0.026 4.026 21 C -0.048 4.048 22 C -0.139 4.139 23 C -0.001 4.001 24 C -0.012 4.012 25 C -0.127 4.127 26 O -0.228 6.228 27 C -0.053 4.053 28 C -0.055 4.055 29 O -0.228 6.228 30 H 0.215 0.785 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.168 4.245 -12.949 13.991 hybrid contribution 0.242 0.116 1.192 1.222 sum 3.409 4.361 -11.757 12.995 Atomic orbital electron populations 1.24225 0.95314 1.02221 1.06342 1.23134 0.94280 0.98237 0.95450 1.18228 0.84368 0.85125 1.01409 1.43684 1.55624 1.10410 1.05498 1.19610 1.30079 1.12172 0.82151 0.87879 1.25247 0.95129 0.97544 0.99258 1.70106 1.18865 1.34513 1.26188 0.86104 0.80400 0.78072 0.81184 1.20465 1.20861 1.19446 1.19174 0.84485 0.86590 0.83675 1.90593 1.50698 1.17440 1.85637 1.22356 1.03707 0.99465 0.92549 0.86892 1.22996 0.90063 1.03298 1.02236 1.20930 1.00061 0.93676 0.96552 0.86919 1.18487 0.93981 0.93098 0.97005 1.20507 0.99469 0.90638 0.94176 1.20194 0.95952 0.96975 1.00742 1.18747 0.97341 0.83535 1.00474 1.18584 0.89399 0.94651 0.98574 1.19926 0.96420 0.93303 1.03085 1.86253 1.37799 1.24588 1.74132 1.23495 1.03402 0.81135 0.97245 1.23518 0.82901 1.02068 0.96972 1.86260 1.27279 1.24195 1.85026 0.78526 0.92018 0.87642 0.92210 0.88216 0.88218 0.85878 0.85722 0.85780 0.86790 0.91069 0.90822 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.29 19.25 29.55 0.57 -4.72 16 2 C -0.11 -2.38 11.37 -37.12 -0.42 -2.80 16 3 C 0.23 5.01 4.91 -6.83 -0.03 4.97 16 4 N -0.43 -10.64 2.60 -117.94 -0.31 -10.94 16 5 C -0.31 -8.44 9.31 -14.93 -0.14 -8.58 16 6 H 0.10 2.96 7.40 -52.49 -0.39 2.57 16 7 C 0.03 0.84 4.82 -17.47 -0.08 0.76 16 8 N -0.86 -22.26 9.58 55.50 0.53 -21.73 16 9 Si 0.92 20.40 29.61 -169.99 -5.03 15.37 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.47 10.91 7.21 -10.99 -0.08 10.83 16 14 O -0.56 -14.30 11.38 5.54 0.06 -14.24 16 15 C -0.16 -2.84 5.16 -91.77 -0.47 -3.32 16 16 H 0.11 1.79 6.54 -51.93 -0.34 1.45 16 17 C -0.15 -2.29 9.57 -26.76 -0.26 -2.54 16 18 C -0.09 -1.47 6.04 -91.80 -0.55 -2.03 16 19 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 20 C -0.03 -0.45 4.35 -104.63 -0.46 -0.91 16 21 C -0.03 -0.56 6.18 -39.59 -0.24 -0.81 16 22 C -0.12 -2.24 9.96 -39.42 -0.39 -2.63 16 23 C 0.04 0.78 6.49 -39.14 -0.25 0.53 16 24 C 0.03 0.57 6.49 -39.14 -0.25 0.31 16 25 C -0.11 -1.89 9.65 -39.42 -0.38 -2.27 16 26 O -0.31 -4.88 10.42 -32.87 -0.34 -5.23 16 27 C 0.02 0.26 7.26 37.40 0.27 0.53 16 28 C 0.02 0.25 7.26 37.40 0.27 0.52 16 29 O -0.31 -5.07 10.42 -32.86 -0.34 -5.41 16 30 H 0.20 3.24 7.80 -54.08 -0.42 2.82 16 31 H 0.06 1.11 6.27 -51.93 -0.33 0.78 16 32 H 0.11 2.42 6.48 -51.93 -0.34 2.08 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.10 1.66 6.16 -51.93 -0.32 1.34 16 36 H 0.12 2.37 5.78 -52.49 -0.30 2.07 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -32.11 350.34 -8.01 -40.13 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.95 Total: 8.93 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.91 Total: -12.16 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.22 Total: -32.67 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.62 Total: -24.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.11 -8.01 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281538500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.226 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds