Wall clock time and date at job start Tue Mar 31 2020 15:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46726 * 177.51132 * 3 2 1 5 5 C 1.37100 * 119.99745 * 95.91001 * 4 3 2 6 6 H 1.07999 * 119.99675 * 162.55556 * 5 4 3 7 7 C 1.38950 * 120.00106 * 342.54602 * 5 4 3 8 8 N 1.31404 * 120.00242 * 337.00785 * 7 5 4 9 9 Si 1.86797 * 119.99805 * 157.00499 * 7 5 4 10 10 H 1.48499 * 109.47427 * 90.00011 * 9 7 5 11 11 H 1.48504 * 109.47410 * 210.00296 * 9 7 5 12 12 H 1.48503 * 109.47209 * 330.00342 * 9 7 5 13 13 C 1.34771 * 119.99842 * 276.17757 * 4 3 2 14 14 O 1.21299 * 120.00173 * 179.72187 * 13 4 3 15 15 C 1.50704 * 120.00318 * 359.73187 * 13 4 3 16 16 H 1.09000 * 115.54775 * 325.66888 * 15 13 4 17 17 C 1.52994 * 117.49884 * 111.37160 * 15 13 4 18 18 C 1.52996 * 117.49961 * 179.97438 * 15 13 4 19 19 H 1.08994 * 117.50086 * 145.01839 * 18 15 13 20 20 C 1.50701 * 117.50051 * 359.97438 * 18 15 13 21 21 C 1.38250 * 119.94058 * 299.72764 * 20 18 15 22 22 C 1.38207 * 120.11064 * 179.77517 * 21 20 18 23 23 C 1.38699 * 120.06441 * 0.56524 * 22 21 20 24 24 C 1.38972 * 119.82215 * 359.62209 * 23 22 21 25 25 C 1.38197 * 119.94521 * 120.00069 * 20 18 15 26 26 O 1.36108 * 120.78511 * 180.26539 * 24 23 22 27 27 C 1.43167 * 116.71406 * 342.81685 * 26 24 23 28 28 C 1.53467 * 108.25577 * 46.16207 * 27 26 24 29 29 O 1.36106 * 119.39604 * 179.53782 * 23 22 21 30 30 H 4.40637 * 5.51433 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47397 * 57.51233 * 3 2 1 32 32 H 1.08996 * 109.47070 * 297.51085 * 3 2 1 33 33 H 0.96993 * 120.00042 * 179.97438 * 8 7 5 34 34 H 1.09003 * 117.50241 * 214.97553 * 17 15 13 35 35 H 1.08999 * 117.50291 * 0.02562 * 17 15 13 36 36 H 1.08000 * 119.94852 * 0.03016 * 21 20 18 37 37 H 1.08000 * 119.96496 * 180.28988 * 22 21 20 38 38 H 1.07998 * 119.96349 * 359.94633 * 25 20 18 39 39 H 1.09010 * 109.70662 * 165.85030 * 27 26 24 40 40 H 1.08997 * 109.71016 * 286.42782 * 27 26 24 41 41 H 1.09005 * 109.70815 * 59.94349 * 28 27 26 42 42 H 1.08994 * 109.71673 * 180.53494 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3808 -0.0600 5 6 3.4771 2.0372 1.0937 6 1 4.0893 2.9258 1.0475 7 6 3.0374 1.5594 2.3221 8 7 1.9693 0.7966 2.3863 9 14 3.9647 2.0013 3.8823 10 1 3.4081 3.2551 4.4507 11 1 3.8212 0.9029 4.8714 12 1 5.4022 2.1971 3.5651 13 6 3.2396 2.0070 -1.2487 14 8 3.6385 3.1515 -1.2979 15 6 2.8621 1.2855 -2.5168 16 1 3.0741 0.2164 -2.5302 17 6 1.6147 1.7682 -3.2596 18 6 3.0039 2.0508 -3.8340 19 1 3.3092 1.4852 -4.7143 20 6 3.5099 3.4686 -3.7641 21 6 2.8060 4.4178 -3.0464 22 6 3.2693 5.7180 -2.9761 23 6 4.4358 6.0766 -3.6353 24 6 5.1412 5.1233 -4.3598 25 6 4.6736 3.8190 -4.4220 26 8 6.2909 5.4525 -5.0097 27 6 6.5280 6.8468 -5.2319 28 6 6.2403 7.5977 -3.9247 29 8 4.8745 7.3631 -3.5646 30 1 -1.0502 -0.0004 -0.0002 31 1 3.0097 -0.5511 -0.8668 32 1 3.0096 -0.4739 0.9114 33 1 1.6626 0.4628 3.2438 34 1 1.0057 1.0166 -3.7621 35 1 1.0673 2.6079 -2.8315 36 1 1.8949 4.1419 -2.5365 37 1 2.7201 6.4565 -2.4110 38 1 5.2196 3.0764 -4.9848 39 1 7.5671 7.0011 -5.5233 40 1 5.8677 7.2112 -6.0188 41 1 6.8968 7.2287 -3.1367 42 1 6.4046 8.6653 -4.0701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281538500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:19 Heat of formation + Delta-G solvation = 15.035606 kcal Electronic energy + Delta-G solvation = -27870.808055 eV Core-core repulsion = 23977.792571 eV Total energy + Delta-G solvation = -3893.015484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14745 -41.00267 -39.02568 -38.13907 -37.12970 -36.42082 -33.91504 -32.93179 -31.86492 -31.60447 -29.26895 -28.33893 -26.97385 -25.97956 -24.42675 -23.71964 -23.33897 -21.08031 -20.25522 -19.63183 -19.44703 -18.37482 -18.20567 -17.99629 -17.73884 -16.73945 -16.32966 -16.08578 -15.89791 -15.84144 -15.45658 -15.32189 -15.23936 -14.74717 -14.60576 -14.20997 -14.01945 -13.89899 -13.81304 -13.48746 -13.20145 -12.82802 -12.65171 -12.53039 -12.44262 -12.20805 -12.11820 -11.92632 -11.38555 -11.31259 -11.15531 -11.01229 -10.96497 -10.53743 -10.09735 -9.75332 -9.38339 -8.58727 -8.27879 -5.84911 0.39346 0.52498 1.34707 1.41180 1.52622 1.91611 2.12095 2.18863 2.35125 2.36695 2.46968 2.74579 3.06114 3.20721 3.32994 3.39566 3.76564 3.83386 3.92165 3.97353 4.02263 4.08904 4.14855 4.15272 4.29862 4.39794 4.44172 4.53093 4.59419 4.67585 4.79095 4.91007 4.92101 5.02687 5.09533 5.19345 5.26878 5.32247 5.49693 5.51343 5.76607 5.83837 5.99516 6.13019 6.52595 6.53828 7.22607 7.24638 7.52909 8.13677 8.69815 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003928 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.629524 B = 7126.825572 C = 8395.078683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.147 4.147 3 C 0.235 3.765 4 N -0.452 5.452 5 C -0.345 4.345 6 H 0.070 0.930 7 C 0.005 3.995 8 N -0.870 5.870 9 Si 0.973 3.027 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.274 1.274 13 C 0.464 3.536 14 O -0.595 6.595 15 C -0.175 4.175 16 H 0.139 0.861 17 C -0.133 4.133 18 C -0.082 4.082 19 H 0.153 0.847 20 C -0.037 4.037 21 C -0.045 4.045 22 C -0.142 4.142 23 C 0.033 3.967 24 C 0.027 3.973 25 C -0.116 4.116 26 O -0.324 6.324 27 C 0.018 3.982 28 C 0.012 3.988 29 O -0.329 6.329 30 H 0.230 0.770 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.270 0.730 34 H 0.138 0.862 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 2.928 -14.842 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.148 4.148 3 C 0.113 3.887 4 N -0.170 5.170 5 C -0.472 4.472 6 H 0.088 0.912 7 C -0.198 4.198 8 N -0.507 5.507 9 Si 0.798 3.202 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.199 1.199 13 C 0.254 3.746 14 O -0.480 6.480 15 C -0.196 4.196 16 H 0.157 0.843 17 C -0.171 4.171 18 C -0.100 4.100 19 H 0.171 0.829 20 C -0.037 4.037 21 C -0.063 4.063 22 C -0.161 4.161 23 C -0.012 4.012 24 C -0.017 4.017 25 C -0.135 4.135 26 O -0.239 6.239 27 C -0.057 4.057 28 C -0.063 4.063 29 O -0.245 6.245 30 H 0.246 0.754 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.495 3.421 -14.688 15.481 hybrid contribution 0.180 0.526 1.673 1.763 sum 3.674 3.947 -13.015 14.088 Atomic orbital electron populations 1.25050 0.96251 1.00607 1.04842 1.23390 0.94864 0.99697 0.96862 1.18247 0.84713 0.83769 1.01977 1.43858 1.56371 1.11540 1.05249 1.19419 1.31209 1.12391 0.84200 0.91204 1.25813 0.95514 0.97433 1.01069 1.70184 1.19108 1.34661 1.26727 0.85261 0.78861 0.77875 0.78231 1.20933 1.19283 1.19905 1.20133 0.82875 0.86564 0.84992 1.90580 1.51679 1.19193 1.86543 1.22282 1.06339 1.00335 0.90621 0.84325 1.23104 0.89841 1.03190 1.00916 1.21156 0.99968 0.92389 0.96514 0.82924 1.18774 0.94167 0.94113 0.96656 1.20496 0.99555 0.91296 0.94972 1.20349 0.96899 0.97276 1.01594 1.18829 0.97268 0.84588 1.00519 1.18758 0.89840 0.94754 0.98375 1.20250 0.96339 0.93855 1.03049 1.86224 1.36632 1.27464 1.73611 1.23905 1.06100 0.78707 0.96974 1.23931 0.80515 1.04746 0.97121 1.86225 1.29809 1.23145 1.85274 0.75376 0.88505 0.89689 0.92043 0.84378 0.90228 0.87323 0.85936 0.83581 0.82779 0.89934 0.91577 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.61 19.25 74.32 1.43 -8.18 16 2 C -0.15 -6.26 11.37 31.12 0.35 -5.91 16 3 C 0.24 10.14 4.91 84.57 0.42 10.56 16 4 N -0.45 -22.68 2.60 -645.42 -1.68 -24.36 16 5 C -0.34 -19.39 9.31 84.04 0.78 -18.60 16 6 H 0.07 4.29 7.40 -2.91 -0.02 4.27 16 7 C 0.01 0.27 4.82 84.93 0.41 0.68 16 8 N -0.87 -45.41 9.58 21.66 0.21 -45.20 16 9 Si 0.97 42.75 29.61 68.60 2.03 44.78 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 C 0.46 21.88 7.21 87.66 0.63 22.51 16 14 O -0.59 -31.72 11.38 -3.09 -0.04 -31.75 16 15 C -0.17 -5.97 5.16 -11.54 -0.06 -6.03 16 16 H 0.14 3.97 6.54 -2.39 -0.02 3.96 16 17 C -0.13 -3.83 9.57 30.58 0.29 -3.54 16 18 C -0.08 -2.41 6.04 -11.56 -0.07 -2.48 16 19 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 20 C -0.04 -1.31 4.35 -19.87 -0.09 -1.39 16 21 C -0.04 -1.77 6.18 22.27 0.14 -1.63 16 22 C -0.14 -5.62 9.96 22.37 0.22 -5.39 16 23 C 0.03 1.21 6.49 22.56 0.15 1.35 16 24 C 0.03 0.96 6.49 22.56 0.15 1.11 16 25 C -0.12 -3.97 9.65 22.37 0.22 -3.75 16 26 O -0.32 -9.65 10.42 -82.55 -0.86 -10.51 16 27 C 0.02 0.35 7.26 72.14 0.52 0.87 16 28 C 0.01 0.25 7.26 72.14 0.52 0.78 16 29 O -0.33 -10.71 10.42 -82.53 -0.86 -11.57 16 30 H 0.23 6.88 7.80 -4.41 -0.03 6.84 16 31 H 0.10 3.35 6.27 -2.39 -0.01 3.34 16 32 H 0.09 3.95 6.48 -2.39 -0.02 3.94 16 33 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.08 2.64 6.16 -2.39 -0.01 2.62 16 36 H 0.11 4.48 5.78 -2.91 -0.02 4.46 16 37 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.15 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -73.48 350.34 5.88 -67.61 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 1.05 Total: 30.05 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 6.02 Total: -19.05 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -1.47 Total: -69.56 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -1.76 Total: -53.82 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -73.48 5.88 -67.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281538500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.642 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds