Wall clock time and date at job start Tue Mar 31 2020 14:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47057 * 2 1 4 4 C 1.38230 * 120.00365 * 89.99644 * 3 2 1 5 5 C 1.38235 * 120.00326 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00196 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46818 * 25.00639 * 7 6 5 9 9 O 1.42899 * 109.46823 * 145.00426 * 7 6 5 10 10 C 1.52994 * 109.47165 * 265.00399 * 7 6 5 11 11 N 1.46505 * 109.47107 * 180.02562 * 10 7 6 12 12 S 1.65594 * 120.00179 * 165.00225 * 11 10 7 13 13 O 1.42095 * 104.27832 * 181.06855 * 12 11 10 14 14 O 1.42107 * 104.27870 * 308.92440 * 12 11 10 15 15 C 1.81402 * 104.45128 * 64.99448 * 12 11 10 16 16 C 1.53005 * 109.46983 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.46859 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00342 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99957 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00250 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00384 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47282 * 89.99235 * 21 19 17 23 23 H 1.48500 * 109.47514 * 209.99632 * 21 19 17 24 24 H 1.48504 * 109.47182 * 329.99771 * 21 19 17 25 25 C 1.38239 * 120.00062 * 0.02871 * 6 5 4 26 26 C 1.38234 * 119.99750 * 270.02378 * 3 2 1 27 27 H 1.08997 * 109.47026 * 300.00180 * 1 2 3 28 28 H 1.08998 * 109.47200 * 60.00502 * 1 2 3 29 29 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47026 * 239.99820 * 2 1 3 31 31 H 1.08998 * 109.47200 * 119.99498 * 2 1 3 32 32 H 1.08000 * 120.00356 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.00616 * 179.70664 * 5 4 3 34 34 H 0.96693 * 114.00661 * 60.00513 * 9 7 6 35 35 H 1.09001 * 109.47449 * 299.99854 * 10 7 6 36 36 H 1.09004 * 109.47262 * 59.99654 * 10 7 6 37 37 H 0.96997 * 119.99718 * 344.99320 * 11 10 7 38 38 H 1.09001 * 109.47262 * 300.00046 * 15 12 11 39 39 H 1.09002 * 109.46938 * 60.00034 * 15 12 11 40 40 H 1.09001 * 109.47199 * 300.00134 * 16 15 12 41 41 H 1.09005 * 109.46901 * 60.00671 * 16 15 12 42 42 H 0.96998 * 120.00497 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.00103 * 179.97438 * 25 6 5 44 44 H 1.08000 * 120.00029 * 359.97337 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9533 4.0276 -0.0001 7 6 3.4546 5.4488 -0.0002 8 1 3.9847 5.6472 0.9313 9 8 4.3422 5.6407 -1.1036 10 6 2.2691 6.4077 -0.1266 11 7 2.7564 7.7893 -0.1273 12 16 1.7611 9.0181 -0.6186 13 8 2.5654 10.1847 -0.5116 14 8 1.2634 8.5843 -1.8769 15 6 0.4324 9.0456 0.6162 16 6 -0.5639 10.1536 0.2688 17 6 -1.6673 10.1767 1.2949 18 1 -1.6590 9.4715 2.1128 19 6 -2.6879 11.0976 1.1890 20 7 -2.6984 11.9561 0.1927 21 14 -4.0561 11.1260 2.4605 22 1 -3.6817 12.0390 3.5702 23 1 -5.3108 11.6053 1.8271 24 1 -4.2635 9.7561 2.9952 25 6 2.7230 3.3759 -1.1973 26 6 2.2622 2.0725 -1.1972 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.0830 1.5634 2.1324 33 1 2.8984 3.8868 2.1323 34 1 3.9369 5.4811 -1.9668 35 1 1.7390 6.2093 -1.0582 36 1 1.5920 6.2612 0.7150 37 1 3.6621 7.9842 0.1601 38 1 -0.0801 8.0836 0.6199 39 1 0.8567 9.2351 1.6022 40 1 -0.0511 11.1154 0.2654 41 1 -0.9882 9.9644 -0.7173 42 1 -3.4162 12.6042 0.1184 43 1 2.9026 3.8851 -2.1327 44 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285405301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:40 Heat of formation + Delta-G solvation = -122.754607 kcal Electronic energy + Delta-G solvation = -25169.652575 eV Core-core repulsion = 21406.106011 eV Total energy + Delta-G solvation = -3763.546564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16027 -37.85712 -36.56346 -35.44042 -34.46337 -34.33414 -33.89986 -31.25038 -31.16933 -30.55650 -27.55412 -25.60951 -24.35520 -23.15298 -22.47808 -21.67529 -20.79107 -18.96523 -17.84607 -17.52542 -16.67546 -16.37332 -16.08579 -15.59802 -15.49511 -15.12491 -14.92437 -14.60480 -14.51139 -14.23741 -13.94195 -13.63836 -13.49061 -13.38585 -13.01767 -12.87032 -12.50573 -12.22772 -11.77239 -11.72532 -11.64593 -11.59008 -11.54350 -11.47925 -11.28350 -11.11323 -11.09066 -10.96897 -10.43376 -10.40208 -10.35970 -9.81809 -9.51145 -9.20420 -9.04251 -8.83449 -8.51279 -6.13371 -4.19058 0.76476 1.00084 1.12123 3.10979 3.25200 3.31439 3.33999 3.41354 4.15376 4.21834 4.31102 4.37516 4.44032 4.48726 4.61690 4.70472 4.72400 4.77660 4.96005 5.00628 5.13431 5.20302 5.21795 5.24142 5.34220 5.52395 5.54298 5.57779 5.63369 5.67008 5.68897 5.80223 5.87030 5.90887 6.11342 6.26675 6.32020 6.47605 6.68900 7.08470 7.29306 7.34035 7.35901 7.79515 8.16574 8.84379 9.45757 10.97690 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.002907 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.049237 B = 9629.642009 C =11410.901353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.146 3.854 8 H 0.115 0.885 9 O -0.549 6.549 10 C 0.088 3.912 11 N -1.122 6.122 12 S 2.595 3.405 13 O -0.966 6.966 14 O -0.968 6.968 15 C -0.591 4.591 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.105 4.105 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.377 0.623 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.359 -23.422 0.681 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.134 4.134 5 C -0.122 4.122 6 C -0.123 4.123 7 C 0.085 3.915 8 H 0.132 0.868 9 O -0.355 6.355 10 C -0.039 4.039 11 N -0.880 5.880 12 S 2.692 3.308 13 O -0.956 6.956 14 O -0.958 6.958 15 C -0.724 4.724 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.123 4.123 26 C -0.132 4.132 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.226 0.774 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.654 -22.643 0.212 25.467 hybrid contribution -1.158 -0.266 1.003 1.555 sum 10.496 -22.909 1.214 25.228 Atomic orbital electron populations 1.21759 0.94492 1.01784 1.02512 1.20559 0.96371 0.92559 1.02816 1.19953 0.98582 0.96350 0.93245 1.21018 0.99919 0.94848 0.97639 1.20989 0.98993 0.94750 0.97440 1.20436 1.01208 0.96632 0.94005 1.20970 0.90128 0.88797 0.91614 0.86774 1.86611 1.39821 1.92249 1.16819 1.21955 0.96857 0.81731 1.03385 1.55685 1.27675 1.18535 1.86072 1.05495 0.75823 0.72702 0.76739 1.93556 1.67167 1.47267 1.87648 1.93532 1.81555 1.81277 1.39426 1.30457 1.15859 1.10234 1.15840 1.18962 0.92755 0.90659 0.98739 1.21003 1.07090 1.17573 1.10350 0.92062 1.25070 0.98253 0.95304 0.95871 1.69953 1.33262 1.19273 1.30358 0.86468 0.81193 0.78386 0.81220 1.20461 1.20997 1.19769 1.20898 0.98896 0.95023 0.97511 1.20993 0.99826 0.94750 0.97672 0.92409 0.92383 0.92375 0.91046 0.91056 0.85957 0.85652 0.77437 0.89786 0.90596 0.75085 0.86425 0.86077 0.94809 0.94823 0.92512 0.85919 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.09 -0.53 6.06 -27.88 -0.17 -0.70 16 3 C -0.08 -0.66 5.13 -104.63 -0.54 -1.19 16 4 C -0.12 -0.94 9.70 -39.59 -0.38 -1.33 16 5 C -0.10 -0.88 9.68 -39.58 -0.38 -1.26 16 6 C -0.12 -1.10 5.00 -104.62 -0.52 -1.62 16 7 C 0.15 1.34 3.30 -27.88 -0.09 1.25 16 8 H 0.11 0.94 8.05 -51.93 -0.42 0.52 16 9 O -0.55 -5.56 13.00 -35.23 -0.46 -6.01 16 10 C 0.09 0.94 5.78 -4.04 -0.02 0.92 16 11 N -1.12 -14.15 5.75 -10.61 -0.06 -14.21 16 12 S 2.60 45.61 5.46 -107.50 -0.59 45.02 16 13 O -0.97 -20.07 18.08 -57.54 -1.04 -21.11 16 14 O -0.97 -19.73 17.50 -57.54 -1.01 -20.73 16 15 C -0.59 -11.10 6.01 37.16 0.22 -10.87 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 17 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 C -0.11 -0.91 9.33 -39.58 -0.37 -1.28 16 26 C -0.11 -0.95 9.70 -39.58 -0.38 -1.33 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.38 2.93 7.39 45.56 0.34 3.27 16 35 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.42 4.64 8.62 -34.46 -0.30 4.34 16 38 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 39 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 0.86 6.62 -52.48 -0.35 0.52 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -36.13 382.97 -10.65 -46.78 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.16 Total: 4.66 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -2.82 Total: -30.54 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.68 Total: -39.97 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.50 Total: -47.85 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 45.61 SS G_CDS: -0.59 Total: 45.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.13 -10.65 -46.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285405301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.976 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds