Wall clock time and date at job start Tue Mar 31 2020 14:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47057 * 2 1 4 4 C 1.38230 * 120.00365 * 89.99644 * 3 2 1 5 5 C 1.38235 * 120.00326 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00196 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46818 * 25.00639 * 7 6 5 9 9 O 1.42899 * 109.46823 * 145.00426 * 7 6 5 10 10 C 1.52994 * 109.47165 * 265.00399 * 7 6 5 11 11 N 1.46505 * 109.47107 * 180.02562 * 10 7 6 12 12 S 1.65594 * 120.00179 * 165.00225 * 11 10 7 13 13 O 1.42095 * 104.27832 * 181.06855 * 12 11 10 14 14 O 1.42107 * 104.27870 * 308.92440 * 12 11 10 15 15 C 1.81402 * 104.45128 * 64.99448 * 12 11 10 16 16 C 1.53005 * 109.46983 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.46859 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00342 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99957 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00250 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00384 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47282 * 89.99235 * 21 19 17 23 23 H 1.48500 * 109.47514 * 209.99632 * 21 19 17 24 24 H 1.48504 * 109.47182 * 329.99771 * 21 19 17 25 25 C 1.38239 * 120.00062 * 0.02871 * 6 5 4 26 26 C 1.38234 * 119.99750 * 270.02378 * 3 2 1 27 27 H 1.08997 * 109.47026 * 300.00180 * 1 2 3 28 28 H 1.08998 * 109.47200 * 60.00502 * 1 2 3 29 29 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47026 * 239.99820 * 2 1 3 31 31 H 1.08998 * 109.47200 * 119.99498 * 2 1 3 32 32 H 1.08000 * 120.00356 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.00616 * 179.70664 * 5 4 3 34 34 H 0.96693 * 114.00661 * 60.00513 * 9 7 6 35 35 H 1.09001 * 109.47449 * 299.99854 * 10 7 6 36 36 H 1.09004 * 109.47262 * 59.99654 * 10 7 6 37 37 H 0.96997 * 119.99718 * 344.99320 * 11 10 7 38 38 H 1.09001 * 109.47262 * 300.00046 * 15 12 11 39 39 H 1.09002 * 109.46938 * 60.00034 * 15 12 11 40 40 H 1.09001 * 109.47199 * 300.00134 * 16 15 12 41 41 H 1.09005 * 109.46901 * 60.00671 * 16 15 12 42 42 H 0.96998 * 120.00497 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.00103 * 179.97438 * 25 6 5 44 44 H 1.08000 * 120.00029 * 359.97337 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9533 4.0276 -0.0001 7 6 3.4546 5.4488 -0.0002 8 1 3.9847 5.6472 0.9313 9 8 4.3422 5.6407 -1.1036 10 6 2.2691 6.4077 -0.1266 11 7 2.7564 7.7893 -0.1273 12 16 1.7611 9.0181 -0.6186 13 8 2.5654 10.1847 -0.5116 14 8 1.2634 8.5843 -1.8769 15 6 0.4324 9.0456 0.6162 16 6 -0.5639 10.1536 0.2688 17 6 -1.6673 10.1767 1.2949 18 1 -1.6590 9.4715 2.1128 19 6 -2.6879 11.0976 1.1890 20 7 -2.6984 11.9561 0.1927 21 14 -4.0561 11.1260 2.4605 22 1 -3.6817 12.0390 3.5702 23 1 -5.3108 11.6053 1.8271 24 1 -4.2635 9.7561 2.9952 25 6 2.7230 3.3759 -1.1973 26 6 2.2622 2.0725 -1.1972 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.0830 1.5634 2.1324 33 1 2.8984 3.8868 2.1323 34 1 3.9369 5.4811 -1.9668 35 1 1.7390 6.2093 -1.0582 36 1 1.5920 6.2612 0.7150 37 1 3.6621 7.9842 0.1601 38 1 -0.0801 8.0836 0.6199 39 1 0.8567 9.2351 1.6022 40 1 -0.0511 11.1154 0.2654 41 1 -0.9882 9.9644 -0.7173 42 1 -3.4162 12.6042 0.1184 43 1 2.9026 3.8851 -2.1327 44 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285405301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:40 Heat of formation + Delta-G solvation = -149.723620 kcal Electronic energy + Delta-G solvation = -25170.822039 eV Core-core repulsion = 21406.106011 eV Total energy + Delta-G solvation = -3764.716029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78436 -38.59821 -38.10405 -37.00189 -35.88980 -35.45044 -34.89712 -33.11942 -31.84379 -31.20550 -28.30833 -27.58740 -25.02702 -23.76451 -23.59281 -23.10633 -21.40683 -20.30517 -19.11238 -18.62394 -18.30787 -17.29634 -17.15131 -16.87626 -16.54129 -16.40674 -16.00244 -15.71961 -15.57974 -15.07041 -14.85519 -14.53235 -14.46145 -14.22092 -14.09534 -13.78373 -13.66408 -13.55560 -13.19503 -13.14719 -13.08323 -12.92965 -12.78127 -12.68959 -12.26051 -12.22539 -12.13081 -12.07214 -11.86158 -11.74156 -11.63679 -11.19625 -11.13372 -10.64692 -10.35812 -9.80582 -9.45894 -8.26027 -6.40080 -0.67436 0.36527 0.51888 1.40999 1.42784 1.53834 1.85769 2.38069 2.78056 2.83522 3.07548 3.27556 3.48418 3.63840 3.78995 3.90218 3.95695 4.05410 4.11408 4.14940 4.18132 4.34027 4.51478 4.53198 4.58458 4.61819 4.71594 4.76595 4.84207 4.94064 5.06047 5.09457 5.12751 5.23736 5.28096 5.29047 5.39467 5.51698 5.64247 5.68629 5.74930 6.06204 6.09858 6.13334 6.69063 6.73980 7.30240 8.86316 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.002907 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.049237 B = 9629.642009 C =11410.901353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.127 4.127 5 C -0.111 4.111 6 C -0.133 4.133 7 C 0.154 3.846 8 H 0.128 0.872 9 O -0.563 6.563 10 C 0.078 3.922 11 N -1.102 6.102 12 S 2.624 3.376 13 O -1.000 7.000 14 O -0.998 6.998 15 C -0.589 4.589 16 C 0.019 3.981 17 C -0.539 4.539 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.257 1.257 25 C -0.118 4.118 26 C -0.127 4.127 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.385 0.615 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.426 0.574 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.006 0.994 41 H 0.007 0.993 42 H 0.267 0.733 43 H 0.132 0.868 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.432 -25.535 2.470 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.129 4.129 6 C -0.134 4.134 7 C 0.094 3.906 8 H 0.145 0.855 9 O -0.370 6.370 10 C -0.048 4.048 11 N -0.864 5.864 12 S 2.720 3.280 13 O -0.990 6.990 14 O -0.987 6.987 15 C -0.721 4.721 16 C -0.019 4.019 17 C -0.578 4.578 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.798 3.202 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.180 1.180 25 C -0.136 4.136 26 C -0.145 4.145 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.235 0.765 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.262 0.738 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.150 0.850 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.734 -24.765 2.007 27.478 hybrid contribution -1.122 0.299 0.409 1.231 sum 10.612 -24.466 2.416 26.777 Atomic orbital electron populations 1.21746 0.94527 1.02332 1.01819 1.20590 0.96239 0.91674 1.03651 1.20241 0.98144 0.97221 0.93244 1.21287 0.99807 0.94993 0.98369 1.21249 0.98674 0.95048 0.97935 1.20453 1.02006 0.96511 0.94418 1.20940 0.89361 0.88490 0.91854 0.85492 1.86586 1.40529 1.92306 1.17608 1.22260 0.98065 0.80440 1.04061 1.55144 1.27236 1.18341 1.85652 1.04351 0.75278 0.72514 0.75836 1.93504 1.67871 1.49746 1.87922 1.93493 1.82297 1.81824 1.41118 1.30346 1.15282 1.08912 1.17533 1.18824 0.93933 0.91843 0.97345 1.21533 1.07600 1.17682 1.10965 0.90518 1.26127 1.01247 0.94874 0.98062 1.70103 1.34427 1.20308 1.32641 0.85312 0.77449 0.79189 0.78300 1.19645 1.20906 1.18039 1.21137 0.98971 0.95442 0.98059 1.21230 0.99950 0.94871 0.98451 0.92975 0.93170 0.91233 0.90341 0.90120 0.84467 0.84060 0.76505 0.90348 0.88618 0.73752 0.83974 0.83769 0.97603 0.97486 0.92406 0.84988 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.08 -0.90 6.06 29.85 0.18 -0.72 16 3 C -0.09 -1.29 5.13 -19.87 -0.10 -1.39 16 4 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 5 C -0.11 -1.65 9.68 22.27 0.22 -1.43 16 6 C -0.13 -2.16 5.00 -19.86 -0.10 -2.26 16 7 C 0.15 2.51 3.30 29.85 0.10 2.61 16 8 H 0.13 1.73 8.05 -2.39 -0.02 1.71 16 9 O -0.56 -10.49 13.00 -148.98 -1.94 -12.42 16 10 C 0.08 1.50 5.78 86.38 0.50 2.00 16 11 N -1.10 -25.83 5.75 -187.48 -1.08 -26.90 16 12 S 2.62 91.16 5.46 -56.49 -0.31 90.85 16 13 O -1.00 -41.72 18.08 -127.65 -2.31 -44.03 16 14 O -1.00 -40.81 17.50 -127.65 -2.23 -43.04 16 15 C -0.59 -21.55 6.01 71.98 0.43 -21.12 16 16 C 0.02 1.01 4.98 29.85 0.15 1.16 16 17 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 18 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -56.95 13.29 21.45 0.28 -56.66 16 21 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 C -0.12 -1.91 9.33 22.27 0.21 -1.70 16 26 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.38 5.55 7.39 -74.06 -0.55 5.00 16 35 H 0.08 1.64 7.69 -2.39 -0.02 1.62 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.43 8.63 8.62 -96.75 -0.83 7.80 16 38 H 0.14 4.45 8.14 -2.39 -0.02 4.44 16 39 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.13 1.73 6.62 -2.91 -0.02 1.71 16 44 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -78.37 382.97 -2.51 -80.87 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.37 Total: 22.58 kcal Atomic # 6 Polarization: -59.71 SS G_CDS: 3.42 Total: -56.29 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -0.79 Total: -83.56 kcal Atomic # 8 Polarization: -93.02 SS G_CDS: -6.48 Total: -99.50 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 91.16 SS G_CDS: -0.31 Total: 90.85 kcal Total: -78.37 -2.51 -80.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285405301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.849 kcal (2) G-P(sol) polarization free energy of solvation -78.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds