Wall clock time and date at job start Tue Mar 31 2020 14:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47140 * 340.00196 * 7 6 5 9 9 O 1.42901 * 109.47339 * 219.99717 * 7 6 5 10 10 C 1.52999 * 109.46996 * 100.00078 * 7 6 5 11 11 N 1.46497 * 109.47157 * 184.99934 * 10 7 6 12 12 S 1.65603 * 120.00219 * 164.99717 * 11 10 7 13 13 O 1.42094 * 104.27891 * 181.07517 * 12 11 10 14 14 O 1.42100 * 104.27807 * 308.93235 * 12 11 10 15 15 C 1.81394 * 104.44676 * 65.00171 * 12 11 10 16 16 C 1.53005 * 109.47169 * 180.02562 * 15 12 11 17 17 C 1.50707 * 109.47193 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99855 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00065 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00110 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46757 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46726 * 119.99901 * 21 19 17 24 24 H 1.48492 * 109.47443 * 240.00252 * 21 19 17 25 25 C 1.38238 * 119.99693 * 359.97438 * 6 5 4 26 26 C 1.38234 * 120.00082 * 0.02562 * 25 6 5 27 27 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 29 29 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 30 30 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 31 31 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 32 32 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 34 34 H 0.96701 * 114.00078 * 300.00242 * 9 7 6 35 35 H 1.09004 * 109.47302 * 305.00037 * 10 7 6 36 36 H 1.09007 * 109.47462 * 64.99918 * 10 7 6 37 37 H 0.96997 * 120.00107 * 345.00179 * 11 10 7 38 38 H 1.09003 * 109.47581 * 300.00174 * 15 12 11 39 39 H 1.09002 * 109.47687 * 60.00452 * 15 12 11 40 40 H 1.08998 * 109.46906 * 299.99719 * 16 15 12 41 41 H 1.08999 * 109.47238 * 59.99912 * 16 15 12 42 42 H 0.97002 * 119.99996 * 180.02562 * 20 19 17 43 43 H 1.08001 * 119.99643 * 179.97438 * 25 6 5 44 44 H 1.07999 * 120.00025 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4685 5.4438 -0.0001 8 1 3.2624 5.9038 0.9664 9 8 2.8120 6.1854 -1.0302 10 6 4.9773 5.4444 -0.2539 11 7 5.4918 6.8109 -0.1358 12 16 7.1205 7.0728 0.0100 13 8 7.2397 8.4840 0.1248 14 8 7.5199 6.2152 1.0703 15 6 7.8135 6.5015 -1.5660 16 6 9.3315 6.6929 -1.5550 17 6 9.9072 6.2188 -2.8646 18 1 9.2555 5.8213 -3.6285 19 6 11.2656 6.2937 -3.0878 20 7 12.0590 6.7792 -2.1580 21 14 11.9794 5.7054 -4.7108 22 1 10.8843 5.2078 -5.5816 23 1 12.6731 6.8328 -5.3839 24 1 12.9479 4.6088 -4.4572 25 6 2.7246 3.3753 -1.1972 26 6 2.2584 2.0739 -1.1972 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.0829 1.5633 2.1325 33 1 2.9131 3.8814 2.1324 34 1 2.9519 5.8321 -1.9194 35 1 5.4694 4.8061 0.4800 36 1 5.1773 5.0663 -1.2565 37 1 4.8786 7.5624 -0.1428 38 1 7.5818 5.4453 -1.7033 39 1 7.3804 7.0777 -2.3837 40 1 9.5635 7.7490 -1.4176 41 1 9.7644 6.1164 -0.7374 42 1 13.0148 6.8322 -2.3152 43 1 2.9045 3.8845 -2.1325 44 1 2.0744 1.5662 -2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285405304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:49 Heat of formation + Delta-G solvation = -123.399577 kcal Electronic energy + Delta-G solvation = -25101.189780 eV Core-core repulsion = 21337.615248 eV Total energy + Delta-G solvation = -3763.574532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16628 -37.88197 -36.57117 -35.44735 -34.46727 -34.36305 -33.90075 -31.25024 -31.16915 -30.57972 -27.55325 -25.61162 -24.37204 -23.18579 -22.46821 -21.67607 -20.79897 -18.96108 -17.83957 -17.52316 -16.68489 -16.45411 -16.09862 -15.62362 -15.46734 -15.13218 -14.92494 -14.57472 -14.47093 -14.14190 -14.00778 -13.81161 -13.57326 -13.38464 -12.93436 -12.74078 -12.51074 -12.40874 -11.76913 -11.73837 -11.66707 -11.59191 -11.55709 -11.50414 -11.26555 -11.11789 -11.10121 -10.96607 -10.43509 -10.39789 -10.35809 -9.82826 -9.52219 -9.20616 -9.05418 -8.83477 -8.51707 -6.13530 -4.19076 0.76718 0.99695 1.11971 3.10578 3.24305 3.31544 3.34732 3.41069 4.13673 4.21678 4.29253 4.37151 4.42806 4.48382 4.60784 4.68931 4.73775 4.76003 4.95130 4.97874 5.11986 5.18959 5.21734 5.23174 5.34339 5.51588 5.53705 5.57490 5.61877 5.66460 5.67907 5.79955 5.82450 5.90950 6.10865 6.26672 6.31721 6.47569 6.68717 7.09721 7.29382 7.29525 7.35756 7.79518 8.16455 8.84511 9.45743 10.97528 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002689 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.794047 B =10410.450593 C =11708.629244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.121 4.121 7 C 0.145 3.855 8 H 0.116 0.884 9 O -0.550 6.550 10 C 0.089 3.911 11 N -1.124 6.124 12 S 2.594 3.406 13 O -0.966 6.966 14 O -0.968 6.968 15 C -0.590 4.590 16 C 0.027 3.973 17 C -0.519 4.519 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.106 4.106 26 C -0.115 4.115 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.376 0.624 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.416 0.584 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.054 -10.899 3.432 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.134 4.134 5 C -0.120 4.120 6 C -0.122 4.122 7 C 0.084 3.916 8 H 0.134 0.866 9 O -0.356 6.356 10 C -0.038 4.038 11 N -0.882 5.882 12 S 2.692 3.308 13 O -0.956 6.956 14 O -0.957 6.957 15 C -0.723 4.723 16 C -0.012 4.012 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.124 4.124 26 C -0.133 4.133 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.224 0.776 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.251 0.749 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.534 -10.279 4.781 26.122 hybrid contribution 0.349 -0.671 -1.969 2.109 sum -23.185 -10.950 2.812 25.795 Atomic orbital electron populations 1.21750 0.94668 1.01736 1.02247 1.20566 0.96200 0.92627 1.03033 1.19951 0.98648 0.96240 0.93244 1.21025 0.99916 0.94783 0.97659 1.21020 0.98525 0.94937 0.97535 1.20416 1.01225 0.96596 0.94009 1.20995 0.89660 0.87864 0.93046 0.86632 1.86633 1.74766 1.55867 1.18354 1.21952 0.95286 0.83997 1.02599 1.55733 1.27075 1.12866 1.92486 1.05508 0.72602 0.74444 0.78262 1.93556 1.84655 1.30182 1.87244 1.93537 1.81086 1.68876 1.52244 1.30446 1.11791 1.11115 1.18963 1.18971 0.83462 0.98837 0.99911 1.21033 0.92295 1.42548 1.00002 0.92034 1.25076 0.97167 0.95125 0.97192 1.69966 1.04454 1.44981 1.33411 0.86413 0.79114 0.78511 0.83239 1.19669 1.20794 1.20800 1.20878 0.99257 0.94895 0.97378 1.20990 0.99908 0.94721 0.97665 0.92370 0.92554 0.92538 0.90919 0.90934 0.85935 0.85621 0.77605 0.89098 0.91264 0.74941 0.86462 0.86079 0.94794 0.94814 0.92577 0.85979 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.09 -0.54 6.06 -27.89 -0.17 -0.71 16 3 C -0.08 -0.65 5.13 -104.63 -0.54 -1.19 16 4 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 5 C -0.10 -0.90 9.67 -39.58 -0.38 -1.29 16 6 C -0.12 -1.10 4.97 -104.62 -0.52 -1.62 16 7 C 0.14 1.34 3.30 -27.88 -0.09 1.25 16 8 H 0.12 1.05 8.00 -51.93 -0.42 0.64 16 9 O -0.55 -5.06 12.99 -35.23 -0.46 -5.52 16 10 C 0.09 0.95 5.75 -4.04 -0.02 0.93 16 11 N -1.12 -14.20 5.85 -10.61 -0.06 -14.26 16 12 S 2.59 45.53 5.46 -107.50 -0.59 44.94 16 13 O -0.97 -20.00 18.08 -57.54 -1.04 -21.04 16 14 O -0.97 -19.79 17.50 -57.54 -1.01 -20.80 16 15 C -0.59 -11.05 6.01 37.16 0.22 -10.82 16 16 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 17 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 21 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.11 -0.88 9.32 -39.58 -0.37 -1.25 16 26 C -0.11 -0.93 9.70 -39.58 -0.38 -1.31 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.94 8.04 -52.49 -0.42 0.52 16 34 H 0.38 2.33 7.50 45.56 0.34 2.67 16 35 H 0.09 1.04 7.69 -51.93 -0.40 0.64 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.42 4.73 8.47 -34.47 -0.29 4.43 16 38 H 0.12 1.95 8.14 -51.92 -0.42 1.52 16 39 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.12 0.76 6.79 -52.49 -0.36 0.40 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -36.10 383.06 -10.64 -46.74 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.15 Total: 4.11 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -2.82 Total: -30.33 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.67 Total: -39.98 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -2.50 Total: -47.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.53 SS G_CDS: -0.59 Total: 44.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.10 -10.64 -46.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285405304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.661 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds