Wall clock time and date at job start Tue Mar 31 2020 14:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47140 * 340.00196 * 7 6 5 9 9 O 1.42901 * 109.47339 * 219.99717 * 7 6 5 10 10 C 1.52999 * 109.46996 * 100.00078 * 7 6 5 11 11 N 1.46497 * 109.47157 * 184.99934 * 10 7 6 12 12 S 1.65603 * 120.00219 * 164.99717 * 11 10 7 13 13 O 1.42094 * 104.27891 * 181.07517 * 12 11 10 14 14 O 1.42100 * 104.27807 * 308.93235 * 12 11 10 15 15 C 1.81394 * 104.44676 * 65.00171 * 12 11 10 16 16 C 1.53005 * 109.47169 * 180.02562 * 15 12 11 17 17 C 1.50707 * 109.47193 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99855 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00065 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00110 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46757 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46726 * 119.99901 * 21 19 17 24 24 H 1.48492 * 109.47443 * 240.00252 * 21 19 17 25 25 C 1.38238 * 119.99693 * 359.97438 * 6 5 4 26 26 C 1.38234 * 120.00082 * 0.02562 * 25 6 5 27 27 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 29 29 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 30 30 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 31 31 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 32 32 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 34 34 H 0.96701 * 114.00078 * 300.00242 * 9 7 6 35 35 H 1.09004 * 109.47302 * 305.00037 * 10 7 6 36 36 H 1.09007 * 109.47462 * 64.99918 * 10 7 6 37 37 H 0.96997 * 120.00107 * 345.00179 * 11 10 7 38 38 H 1.09003 * 109.47581 * 300.00174 * 15 12 11 39 39 H 1.09002 * 109.47687 * 60.00452 * 15 12 11 40 40 H 1.08998 * 109.46906 * 299.99719 * 16 15 12 41 41 H 1.08999 * 109.47238 * 59.99912 * 16 15 12 42 42 H 0.97002 * 119.99996 * 180.02562 * 20 19 17 43 43 H 1.08001 * 119.99643 * 179.97438 * 25 6 5 44 44 H 1.07999 * 120.00025 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4685 5.4438 -0.0001 8 1 3.2624 5.9038 0.9664 9 8 2.8120 6.1854 -1.0302 10 6 4.9773 5.4444 -0.2539 11 7 5.4918 6.8109 -0.1358 12 16 7.1205 7.0728 0.0100 13 8 7.2397 8.4840 0.1248 14 8 7.5199 6.2152 1.0703 15 6 7.8135 6.5015 -1.5660 16 6 9.3315 6.6929 -1.5550 17 6 9.9072 6.2188 -2.8646 18 1 9.2555 5.8213 -3.6285 19 6 11.2656 6.2937 -3.0878 20 7 12.0590 6.7792 -2.1580 21 14 11.9794 5.7054 -4.7108 22 1 10.8843 5.2078 -5.5816 23 1 12.6731 6.8328 -5.3839 24 1 12.9479 4.6088 -4.4572 25 6 2.7246 3.3753 -1.1972 26 6 2.2584 2.0739 -1.1972 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.0829 1.5633 2.1325 33 1 2.9131 3.8814 2.1324 34 1 2.9519 5.8321 -1.9194 35 1 5.4694 4.8061 0.4800 36 1 5.1773 5.0663 -1.2565 37 1 4.8786 7.5624 -0.1428 38 1 7.5818 5.4453 -1.7033 39 1 7.3804 7.0777 -2.3837 40 1 9.5635 7.7490 -1.4176 41 1 9.7644 6.1164 -0.7374 42 1 13.0148 6.8322 -2.3152 43 1 2.9045 3.8845 -2.1325 44 1 2.0744 1.5662 -2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285405304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:48 Heat of formation + Delta-G solvation = -150.377288 kcal Electronic energy + Delta-G solvation = -25102.359621 eV Core-core repulsion = 21337.615248 eV Total energy + Delta-G solvation = -3764.744374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78788 -38.60075 -38.11381 -37.00746 -35.88626 -35.44536 -34.90375 -33.11602 -31.83875 -31.21513 -28.29999 -27.58500 -25.03310 -23.79751 -23.58017 -23.09779 -21.41153 -20.30230 -19.11158 -18.58894 -18.31114 -17.33319 -17.18636 -16.86286 -16.53806 -16.43170 -15.98599 -15.77366 -15.45479 -15.06334 -14.77108 -14.55297 -14.47855 -14.38224 -14.14065 -13.78600 -13.64501 -13.38828 -13.19526 -13.11263 -13.07598 -12.94935 -12.85856 -12.76492 -12.26559 -12.22647 -12.10368 -12.07957 -11.83342 -11.73583 -11.63908 -11.19536 -11.08887 -10.65304 -10.40214 -9.80964 -9.46510 -8.25756 -6.39552 -0.67094 0.36028 0.51474 1.41292 1.41850 1.55039 1.85321 2.38191 2.77645 2.83699 3.07913 3.26693 3.49417 3.63363 3.78456 3.88564 3.95510 4.05339 4.11997 4.15317 4.16382 4.34348 4.50692 4.51816 4.58518 4.61813 4.71555 4.77294 4.84233 4.94007 5.05745 5.09753 5.12390 5.23431 5.28629 5.29534 5.38653 5.51086 5.64027 5.69132 5.74497 6.06464 6.09588 6.13238 6.74629 6.75431 7.30661 8.86718 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002689 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.794047 B =10410.450593 C =11708.629244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.088 4.088 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.133 4.133 7 C 0.156 3.844 8 H 0.114 0.886 9 O -0.559 6.559 10 C 0.079 3.921 11 N -1.104 6.104 12 S 2.623 3.377 13 O -1.000 7.000 14 O -0.998 6.998 15 C -0.587 4.587 16 C 0.018 3.982 17 C -0.536 4.536 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.935 5.935 21 Si 0.974 3.026 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.112 4.112 26 C -0.126 4.126 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.389 0.611 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.426 0.574 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.006 0.994 41 H 0.007 0.993 42 H 0.267 0.733 43 H 0.143 0.857 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.756 -12.267 1.646 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.135 4.135 6 C -0.134 4.134 7 C 0.095 3.905 8 H 0.132 0.868 9 O -0.367 6.367 10 C -0.047 4.047 11 N -0.866 5.866 12 S 2.720 3.280 13 O -0.990 6.990 14 O -0.988 6.988 15 C -0.719 4.719 16 C -0.020 4.020 17 C -0.575 4.575 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.575 5.575 21 Si 0.798 3.202 22 H -0.178 1.178 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.130 4.130 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.240 0.760 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.263 0.737 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.160 0.840 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.252 -11.647 2.979 27.967 hybrid contribution 0.781 -0.281 -1.376 1.607 sum -24.471 -11.928 1.603 27.270 Atomic orbital electron populations 1.21729 0.94186 1.02354 1.01889 1.20604 0.96554 0.91652 1.03572 1.20244 0.98193 0.97115 0.93251 1.21251 1.00023 0.94824 0.98478 1.21242 0.98813 0.95417 0.98008 1.20437 1.02055 0.96464 0.94468 1.20810 0.88336 0.88171 0.93134 0.86831 1.86616 1.74680 1.56142 1.19259 1.22253 0.96341 0.82317 1.03825 1.55196 1.24909 1.14405 1.92057 1.04369 0.73454 0.72980 0.77232 1.93504 1.85799 1.32224 1.87486 1.93498 1.82430 1.69468 1.53396 1.30327 1.07233 1.13443 1.20905 1.18837 0.88116 0.96534 0.98553 1.21549 0.92929 1.42054 1.00960 0.90497 1.26136 0.97872 0.95245 1.01191 1.70113 1.04865 1.46571 1.35922 0.85256 0.78548 0.77915 0.78477 1.17781 1.20510 1.20439 1.21168 0.98793 0.95113 0.97956 1.21270 0.99814 0.94921 0.98369 0.91277 0.92979 0.92815 0.90298 0.90494 0.84786 0.85011 0.76048 0.89851 0.88967 0.73698 0.83917 0.83779 0.97591 0.97488 0.92445 0.83973 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.09 -0.93 6.06 29.84 0.18 -0.75 16 3 C -0.09 -1.29 5.13 -19.87 -0.10 -1.39 16 4 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 5 C -0.12 -1.95 9.67 22.27 0.22 -1.74 16 6 C -0.13 -2.19 4.97 -19.86 -0.10 -2.29 16 7 C 0.16 2.59 3.30 29.85 0.10 2.69 16 8 H 0.11 1.91 8.00 -2.39 -0.02 1.89 16 9 O -0.56 -8.89 12.99 -148.98 -1.94 -10.83 16 10 C 0.08 1.53 5.75 86.38 0.50 2.02 16 11 N -1.10 -26.00 5.85 -187.49 -1.10 -27.10 16 12 S 2.62 91.01 5.46 -56.49 -0.31 90.71 16 13 O -1.00 -41.60 18.08 -127.65 -2.31 -43.90 16 14 O -1.00 -41.04 17.50 -127.65 -2.23 -43.27 16 15 C -0.59 -21.34 6.01 71.98 0.43 -20.91 16 16 C 0.02 0.96 4.98 29.85 0.15 1.10 16 17 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 18 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 19 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 20 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 21 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 22 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C -0.11 -1.62 9.32 22.27 0.21 -1.41 16 26 C -0.13 -1.80 9.70 22.27 0.22 -1.58 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 0.74 8.09 -2.39 -0.02 0.73 16 31 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.13 1.90 8.04 -2.91 -0.02 1.88 16 34 H 0.39 3.64 7.50 -74.06 -0.56 3.09 16 35 H 0.08 1.79 7.69 -2.39 -0.02 1.77 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.43 8.85 8.47 -96.75 -0.82 8.03 16 38 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 39 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.14 1.34 6.79 -2.91 -0.02 1.32 16 44 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -78.38 383.06 -2.52 -80.91 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.37 Total: 20.74 kcal Atomic # 6 Polarization: -59.11 SS G_CDS: 3.42 Total: -55.69 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -0.81 Total: -83.65 kcal Atomic # 8 Polarization: -91.52 SS G_CDS: -6.48 Total: -98.00 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 91.01 SS G_CDS: -0.31 Total: 90.71 kcal Total: -78.38 -2.52 -80.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285405304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.471 kcal (2) G-P(sol) polarization free energy of solvation -78.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds