Wall clock time and date at job start Tue Mar 31 2020 15:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.50703 * 109.47134 * 240.00494 * 2 1 3 5 5 H 1.08000 * 119.99582 * 239.99768 * 4 2 1 6 6 C 1.37873 * 119.99970 * 59.99643 * 4 2 1 7 7 N 1.31510 * 120.00325 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46949 * 59.99892 * 8 6 4 10 10 H 1.48494 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47007 * 299.99746 * 8 6 4 12 12 C 1.53001 * 109.47384 * 120.00171 * 2 1 3 13 13 S 1.81394 * 109.47119 * 299.99912 * 12 2 1 14 14 O 1.42102 * 110.54260 * 68.37791 * 13 12 2 15 15 O 1.42105 * 110.54556 * 291.62624 * 13 12 2 16 16 N 1.65599 * 104.45165 * 180.02562 * 13 12 2 17 17 C 1.46504 * 119.99750 * 64.99878 * 16 13 12 18 18 C 1.53001 * 109.46908 * 165.00512 * 17 16 13 19 19 O 1.42902 * 109.47386 * 65.00040 * 18 17 16 20 20 C 1.35898 * 116.99694 * 180.02562 * 19 18 17 21 21 C 1.38735 * 120.05254 * 179.97438 * 20 19 18 22 22 C 1.38144 * 119.94607 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05233 * 0.02562 * 22 21 20 24 24 C 1.38269 * 120.11595 * 359.95530 * 23 22 21 25 25 C 1.38142 * 120.04935 * 0.04230 * 24 23 22 26 26 H 1.08999 * 109.47018 * 299.99661 * 1 2 3 27 27 H 1.09000 * 109.47295 * 59.99894 * 1 2 3 28 28 H 1.09001 * 109.46738 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47455 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47126 * 300.00737 * 3 2 1 31 31 H 1.08999 * 109.46933 * 60.00286 * 3 2 1 32 32 H 0.96997 * 120.00105 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46867 * 179.97438 * 12 2 1 34 34 H 1.08992 * 109.46791 * 60.00289 * 12 2 1 35 35 H 0.96995 * 120.00260 * 245.00849 * 16 13 12 36 36 H 1.08997 * 109.46959 * 45.00522 * 17 16 13 37 37 H 1.09000 * 109.47126 * 285.00168 * 17 16 13 38 38 H 1.08999 * 109.46920 * 304.99793 * 18 17 16 39 39 H 1.08998 * 109.47220 * 185.00164 * 18 17 16 40 40 H 1.08002 * 120.02704 * 359.70561 * 21 20 19 41 41 H 1.08001 * 119.97447 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.94089 * 179.97438 * 23 22 21 43 43 H 1.07992 * 119.97577 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.02748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8258 -0.4203 -5.2205 11 1 3.8063 -1.1206 -4.0084 12 6 2.0401 -0.7213 1.2492 13 16 1.4355 0.1338 2.7303 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0543 -0.7401 3.9936 17 6 3.5029 -0.7963 4.2052 18 6 3.7928 -1.3322 5.6087 19 8 3.3440 -2.6856 5.7039 20 6 3.5276 -3.3141 6.8948 21 6 3.1150 -4.6286 7.0575 22 6 3.3032 -5.2655 8.2688 23 6 3.9016 -4.5937 9.3187 24 6 4.3140 -3.2837 9.1591 25 6 4.1281 -2.6424 7.9497 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7080 1.1609 -3.4843 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2491 35 1 1.4578 -1.2148 4.5932 36 1 3.9239 0.2040 4.1041 37 1 3.9530 -1.4567 3.4640 38 1 3.2692 -0.7231 6.3455 39 1 4.8652 -1.2908 5.7991 40 1 2.6433 -5.1523 6.2391 41 1 2.9819 -6.2887 8.3961 42 1 4.0475 -5.0932 10.2651 43 1 4.7815 -2.7612 9.9805 44 1 4.4500 -1.6190 7.8255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294928996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:02 Heat of formation + Delta-G solvation = -88.242532 kcal Electronic energy + Delta-G solvation = -25779.159301 eV Core-core repulsion = 22017.109293 eV Total energy + Delta-G solvation = -3762.050009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38557 -37.88595 -36.55942 -36.27164 -35.39217 -35.10678 -31.66535 -31.36887 -30.36707 -28.77953 -26.62153 -25.71263 -25.22659 -23.93414 -22.70972 -21.74677 -19.64395 -18.92949 -18.51203 -17.35837 -16.72164 -16.42701 -16.08372 -15.89402 -15.46028 -15.29686 -14.80754 -14.69484 -14.43671 -14.01747 -13.73018 -13.32120 -13.05309 -12.98373 -12.80186 -12.50334 -12.40155 -12.08410 -11.88567 -11.60042 -11.43884 -11.24449 -11.15369 -11.05446 -11.01039 -10.91857 -10.70009 -10.40638 -10.27327 -10.11473 -9.66505 -9.64109 -9.31427 -9.28062 -8.67853 -8.49413 -8.39758 -6.03126 -4.15191 0.85895 1.03060 1.15222 2.85032 3.20680 3.27175 3.32679 3.34333 3.49578 4.27594 4.37059 4.42507 4.55143 4.63698 4.65999 4.80690 4.86364 4.94085 5.07656 5.13323 5.21996 5.26412 5.34643 5.52368 5.64984 5.69995 5.70522 5.92283 6.00691 6.10072 6.22916 6.38477 6.47056 6.70746 6.80026 6.90878 7.01868 7.10131 7.15499 7.31925 7.50744 7.67995 7.98431 8.09785 8.33262 8.83114 9.50180 10.98153 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.002634 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.592112 B =10629.129350 C =11287.995151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.594 3.406 14 O -0.963 6.963 15 O -0.966 6.966 16 N -1.129 6.129 17 C 0.119 3.881 18 C 0.052 3.948 19 O -0.310 6.310 20 C 0.132 3.868 21 C -0.153 4.153 22 C -0.081 4.081 23 C -0.163 4.163 24 C -0.081 4.081 25 C -0.211 4.211 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.415 0.585 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -7.948 20.703 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.692 3.308 14 O -0.954 6.954 15 O -0.956 6.956 16 N -0.887 5.887 17 C -0.008 4.008 18 C -0.024 4.024 19 O -0.223 6.223 20 C 0.087 3.913 21 C -0.171 4.171 22 C -0.099 4.099 23 C -0.181 4.181 24 C -0.099 4.099 25 C -0.230 4.230 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.248 0.752 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.694 -7.000 20.383 22.567 hybrid contribution 0.642 -1.123 -0.715 1.478 sum 7.336 -8.122 19.668 22.508 Atomic orbital electron populations 1.22278 0.96920 1.00668 1.02318 1.17927 0.92837 0.92190 0.89070 1.22276 0.99681 0.97822 1.02366 1.20906 1.31770 1.12086 0.89412 0.92359 1.24937 0.94899 0.94986 0.98923 1.69788 1.36218 1.22595 1.23584 0.86594 0.79121 0.79726 0.82155 1.20285 1.21197 1.20289 1.30517 1.11194 1.12979 1.16821 1.05604 0.74434 0.75159 0.75602 1.93558 1.29458 1.86653 1.85713 1.93535 1.78209 1.38221 1.85586 1.55810 1.13603 1.71193 1.48084 1.21347 0.81708 1.02056 0.95661 1.23077 1.00050 0.80881 0.98414 1.86118 1.78062 1.27177 1.30979 1.19063 0.95025 0.92401 0.84837 1.20521 1.04804 0.92740 0.99071 1.20991 0.97139 0.99690 0.92123 1.21070 1.02317 0.95290 0.99411 1.20957 0.97742 0.94717 0.96518 1.21309 1.06136 1.01231 0.94311 0.95366 0.88644 0.94450 0.94487 0.88671 0.95300 0.92687 0.86480 0.86158 0.75167 0.88027 0.90465 0.90909 0.90433 0.85029 0.85396 0.86023 0.85871 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.78 37.16 0.29 -3.77 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 4 C -0.50 -13.15 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.11 9.35 55.43 0.52 -23.59 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C -0.58 -11.17 5.01 37.16 0.19 -10.99 16 13 S 2.59 47.09 4.49 -107.50 -0.48 46.60 16 14 O -0.96 -20.22 15.70 -57.54 -0.90 -21.12 16 15 O -0.97 -19.60 15.12 -57.54 -0.87 -20.47 16 16 N -1.13 -15.13 5.85 -10.61 -0.06 -15.19 16 17 C 0.12 1.28 6.52 -4.04 -0.03 1.25 16 18 C 0.05 0.47 4.93 37.16 0.18 0.65 16 19 O -0.31 -3.38 9.94 -19.42 -0.19 -3.57 16 20 C 0.13 1.37 6.69 -39.22 -0.26 1.11 16 21 C -0.15 -1.47 9.99 -39.43 -0.39 -1.86 16 22 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 23 C -0.16 -1.23 10.04 -39.56 -0.40 -1.63 16 24 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 25 C -0.21 -1.87 9.04 -39.44 -0.36 -2.22 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 27 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 31 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 34 H 0.12 2.14 8.14 -51.93 -0.42 1.71 16 35 H 0.42 5.10 8.47 -34.47 -0.29 4.81 16 36 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 39 H 0.08 0.52 7.66 -51.93 -0.40 0.12 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.13 0.92 6.30 -52.48 -0.33 0.59 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -32.63 362.68 -9.64 -42.28 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.36 Total: 7.14 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -1.73 Total: -33.15 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.46 Total: -38.78 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.97 Total: -45.16 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 47.09 SS G_CDS: -0.48 Total: 46.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.63 -9.64 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294928996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.966 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds