Wall clock time and date at job start Tue Mar 31 2020 15:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.50703 * 109.47134 * 240.00494 * 2 1 3 5 5 H 1.08000 * 119.99582 * 239.99768 * 4 2 1 6 6 C 1.37873 * 119.99970 * 59.99643 * 4 2 1 7 7 N 1.31510 * 120.00325 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46949 * 59.99892 * 8 6 4 10 10 H 1.48494 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47007 * 299.99746 * 8 6 4 12 12 C 1.53001 * 109.47384 * 120.00171 * 2 1 3 13 13 S 1.81394 * 109.47119 * 299.99912 * 12 2 1 14 14 O 1.42102 * 110.54260 * 68.37791 * 13 12 2 15 15 O 1.42105 * 110.54556 * 291.62624 * 13 12 2 16 16 N 1.65599 * 104.45165 * 180.02562 * 13 12 2 17 17 C 1.46504 * 119.99750 * 64.99878 * 16 13 12 18 18 C 1.53001 * 109.46908 * 165.00512 * 17 16 13 19 19 O 1.42902 * 109.47386 * 65.00040 * 18 17 16 20 20 C 1.35898 * 116.99694 * 180.02562 * 19 18 17 21 21 C 1.38735 * 120.05254 * 179.97438 * 20 19 18 22 22 C 1.38144 * 119.94607 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05233 * 0.02562 * 22 21 20 24 24 C 1.38269 * 120.11595 * 359.95530 * 23 22 21 25 25 C 1.38142 * 120.04935 * 0.04230 * 24 23 22 26 26 H 1.08999 * 109.47018 * 299.99661 * 1 2 3 27 27 H 1.09000 * 109.47295 * 59.99894 * 1 2 3 28 28 H 1.09001 * 109.46738 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47455 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47126 * 300.00737 * 3 2 1 31 31 H 1.08999 * 109.46933 * 60.00286 * 3 2 1 32 32 H 0.96997 * 120.00105 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46867 * 179.97438 * 12 2 1 34 34 H 1.08992 * 109.46791 * 60.00289 * 12 2 1 35 35 H 0.96995 * 120.00260 * 245.00849 * 16 13 12 36 36 H 1.08997 * 109.46959 * 45.00522 * 17 16 13 37 37 H 1.09000 * 109.47126 * 285.00168 * 17 16 13 38 38 H 1.08999 * 109.46920 * 304.99793 * 18 17 16 39 39 H 1.08998 * 109.47220 * 185.00164 * 18 17 16 40 40 H 1.08002 * 120.02704 * 359.70561 * 21 20 19 41 41 H 1.08001 * 119.97447 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.94089 * 179.97438 * 23 22 21 43 43 H 1.07992 * 119.97577 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.02748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8258 -0.4203 -5.2205 11 1 3.8063 -1.1206 -4.0084 12 6 2.0401 -0.7213 1.2492 13 16 1.4355 0.1338 2.7303 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0543 -0.7401 3.9936 17 6 3.5029 -0.7963 4.2052 18 6 3.7928 -1.3322 5.6087 19 8 3.3440 -2.6856 5.7039 20 6 3.5276 -3.3141 6.8948 21 6 3.1150 -4.6286 7.0575 22 6 3.3032 -5.2655 8.2688 23 6 3.9016 -4.5937 9.3187 24 6 4.3140 -3.2837 9.1591 25 6 4.1281 -2.6424 7.9497 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7080 1.1609 -3.4843 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2491 35 1 1.4578 -1.2148 4.5932 36 1 3.9239 0.2040 4.1041 37 1 3.9530 -1.4567 3.4640 38 1 3.2692 -0.7231 6.3455 39 1 4.8652 -1.2908 5.7991 40 1 2.6433 -5.1523 6.2391 41 1 2.9819 -6.2887 8.3961 42 1 4.0475 -5.0932 10.2651 43 1 4.7815 -2.7612 9.9805 44 1 4.4500 -1.6190 7.8255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294928996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:01 Heat of formation + Delta-G solvation = -109.655080 kcal Electronic energy + Delta-G solvation = -25780.087819 eV Core-core repulsion = 22017.109293 eV Total energy + Delta-G solvation = -3762.978526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04008 -38.56017 -38.11473 -38.09188 -36.90269 -36.15099 -33.62525 -31.97899 -31.05311 -29.57192 -28.28602 -27.67632 -27.23906 -24.67294 -23.33955 -22.42783 -21.38129 -20.31203 -19.26188 -18.78394 -17.88235 -17.67581 -17.13845 -16.83562 -16.76237 -16.52460 -16.49754 -15.64801 -15.34731 -15.02370 -14.80442 -14.60662 -14.40991 -14.31167 -13.96315 -13.80625 -13.75257 -13.30326 -13.09076 -12.99872 -12.86068 -12.79375 -12.52018 -12.47897 -12.39112 -12.17159 -12.14963 -11.95809 -11.89150 -11.70261 -11.55072 -11.35818 -10.70604 -10.40404 -10.32774 -9.91854 -9.13781 -8.02227 -6.20804 -0.59753 0.42750 0.52675 1.45522 1.46088 1.53165 1.88310 2.22055 2.44672 2.86003 2.88448 3.19846 3.32753 3.68732 3.95395 3.98745 4.05609 4.10393 4.19447 4.29074 4.34313 4.45702 4.49352 4.54900 4.61771 4.68522 4.83431 4.86861 4.88248 4.94124 5.01467 5.10361 5.12395 5.39393 5.40237 5.51765 5.52299 5.64082 5.65406 5.89567 5.99012 6.06585 6.13130 6.35292 6.47898 6.83848 7.47387 8.97364 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.002634 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.592112 B =10629.129350 C =11287.995151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.587 4.587 13 S 2.617 3.383 14 O -0.995 6.995 15 O -0.987 6.987 16 N -1.115 6.115 17 C 0.106 3.894 18 C 0.052 3.948 19 O -0.328 6.328 20 C 0.110 3.890 21 C -0.174 4.174 22 C -0.086 4.086 23 C -0.167 4.167 24 C -0.087 4.087 25 C -0.219 4.219 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.422 0.578 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.877 -9.136 22.404 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.196 1.196 12 C -0.719 4.719 13 S 2.714 3.286 14 O -0.985 6.985 15 O -0.977 6.977 16 N -0.876 5.876 17 C -0.020 4.020 18 C -0.024 4.024 19 O -0.242 6.242 20 C 0.064 3.936 21 C -0.193 4.193 22 C -0.104 4.104 23 C -0.185 4.185 24 C -0.105 4.105 25 C -0.238 4.238 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.303 -8.197 22.083 24.976 hybrid contribution 0.170 -0.787 -1.137 1.393 sum 8.473 -8.983 20.946 24.315 Atomic orbital electron populations 1.22222 0.97952 1.00389 1.01351 1.17920 0.92207 0.92291 0.90901 1.22202 0.99968 0.98189 1.01390 1.21271 1.31666 1.12283 0.90434 0.91913 1.25676 0.95220 0.95669 1.01663 1.69934 1.37119 1.23706 1.23884 0.85679 0.78789 0.78654 0.78882 1.19890 1.21365 1.19598 1.30458 1.12747 1.13266 1.15454 1.04629 0.73440 0.74821 0.75699 1.93507 1.31699 1.87095 1.86226 1.93502 1.78431 1.39787 1.85976 1.55368 1.15214 1.70657 1.46373 1.21696 0.79669 1.03173 0.97436 1.23148 1.01701 0.80307 0.97235 1.86071 1.78643 1.27931 1.31605 1.19295 0.96224 0.92875 0.85157 1.20725 1.05638 0.93049 0.99878 1.21289 0.96802 1.00664 0.91671 1.21428 1.01458 0.95411 1.00160 1.21317 0.97355 0.95013 0.96829 1.21547 1.05952 1.01985 0.94313 0.94859 0.91050 0.94315 0.93838 0.91184 0.94711 0.92938 0.84193 0.84779 0.74255 0.87144 0.89269 0.90188 0.87862 0.85313 0.83461 0.83781 0.83630 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.07 7.78 71.98 0.56 -7.51 16 2 C 0.07 3.30 0.52 -52.93 -0.03 3.27 16 3 C -0.16 -7.81 7.77 71.98 0.56 -7.25 16 4 C -0.52 -26.84 8.01 25.60 0.21 -26.63 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 6 C 0.02 0.91 5.15 84.65 0.44 1.34 16 7 N -0.91 -50.32 9.35 21.45 0.20 -50.12 16 8 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 C -0.59 -21.75 5.01 71.98 0.36 -21.39 16 13 S 2.62 92.22 4.49 -56.49 -0.25 91.97 16 14 O -0.99 -41.34 15.70 -127.65 -2.00 -43.34 16 15 O -0.99 -39.03 15.12 -127.65 -1.93 -40.96 16 16 N -1.11 -27.96 5.85 -187.48 -1.10 -29.06 16 17 C 0.11 2.03 6.52 86.38 0.56 2.59 16 18 C 0.05 0.81 4.93 71.98 0.36 1.17 16 19 O -0.33 -6.71 9.94 -92.40 -0.92 -7.63 16 20 C 0.11 2.14 6.69 22.51 0.15 2.29 16 21 C -0.17 -3.23 9.99 22.37 0.22 -3.01 16 22 C -0.09 -1.25 10.04 22.25 0.22 -1.03 16 23 C -0.17 -2.14 10.04 22.28 0.22 -1.92 16 24 C -0.09 -1.16 10.04 22.25 0.22 -0.93 16 25 C -0.22 -3.45 9.04 22.36 0.20 -3.25 16 26 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 27 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 31 H 0.03 1.61 5.46 -2.39 -0.01 1.60 16 32 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 34 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 35 H 0.42 9.75 8.47 -96.75 -0.82 8.93 16 36 H 0.11 1.95 7.69 -2.39 -0.02 1.93 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.12 7.66 -2.39 -0.02 1.11 16 39 H 0.10 1.09 7.66 -2.39 -0.02 1.07 16 40 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 44 H 0.14 1.69 6.30 -2.91 -0.02 1.67 16 Total: -1.00 -69.75 362.68 0.47 -69.27 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.19 Total: 27.97 kcal Atomic # 6 Polarization: -66.51 SS G_CDS: 4.26 Total: -62.25 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -0.90 Total: -79.18 kcal Atomic # 8 Polarization: -87.08 SS G_CDS: -4.85 Total: -91.93 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 92.22 SS G_CDS: -0.25 Total: 91.97 kcal Total: -69.75 0.47 -69.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294928996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.380 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds