Wall clock time and date at job start Tue Mar 31 2020 15:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41593 * 114.00298 * 2 1 4 4 C 1.46500 * 119.99866 * 90.00111 * 3 2 1 5 5 C 1.50704 * 109.47206 * 90.00338 * 4 3 2 6 6 C 1.38233 * 120.00265 * 89.99789 * 5 4 3 7 7 C 1.38233 * 120.00060 * 179.97438 * 6 5 4 8 8 C 1.38244 * 119.99881 * 359.97438 * 7 6 5 9 9 C 1.38231 * 120.00148 * 0.28237 * 8 7 6 10 10 C 1.38240 * 119.99750 * 359.50476 * 9 8 7 11 11 S 1.65603 * 120.00437 * 269.99926 * 3 2 1 12 12 O 1.42104 * 104.27105 * 31.07094 * 11 3 2 13 13 O 1.42094 * 104.27800 * 158.92553 * 11 3 2 14 14 C 1.81399 * 104.44997 * 275.00414 * 11 3 2 15 15 C 1.53007 * 109.46772 * 179.97438 * 14 11 3 16 16 C 1.53001 * 109.46761 * 299.99458 * 15 14 11 17 17 C 1.52998 * 109.47287 * 59.99990 * 15 14 11 18 18 C 1.50706 * 109.46619 * 179.97438 * 15 14 11 19 19 H 1.07999 * 120.00037 * 0.83417 * 18 15 14 20 20 C 1.37878 * 119.99471 * 180.83681 * 18 15 14 21 21 N 1.31510 * 119.99614 * 194.57726 * 20 18 15 22 22 Si 1.86802 * 120.00139 * 14.57442 * 20 18 15 23 23 H 1.48491 * 109.46964 * 84.45759 * 22 20 18 24 24 H 1.48502 * 109.46745 * 204.45314 * 22 20 18 25 25 H 1.48499 * 109.47117 * 324.45275 * 22 20 18 26 26 H 1.08996 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47192 * 300.00016 * 1 2 3 28 28 H 1.09005 * 109.47501 * 59.99694 * 1 2 3 29 29 H 1.08993 * 109.47345 * 329.99868 * 4 3 2 30 30 H 1.09005 * 109.47278 * 209.99646 * 4 3 2 31 31 H 1.07995 * 119.99850 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.00470 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.99855 * 180.02562 * 8 7 6 34 34 H 1.07997 * 120.00307 * 179.72724 * 9 8 7 35 35 H 1.08002 * 120.00123 * 180.27550 * 10 9 8 36 36 H 1.09001 * 109.46866 * 299.99516 * 14 11 3 37 37 H 1.08993 * 109.47280 * 59.99585 * 14 11 3 38 38 H 1.08999 * 109.46838 * 70.24069 * 16 15 14 39 39 H 1.09003 * 109.46753 * 190.23539 * 16 15 14 40 40 H 1.08997 * 109.47333 * 310.23595 * 16 15 14 41 41 H 1.09001 * 109.47469 * 59.99694 * 17 15 14 42 42 H 1.08999 * 109.46777 * 180.02562 * 17 15 14 43 43 H 1.09002 * 109.46662 * 299.99853 * 17 15 14 44 44 H 0.97008 * 120.00352 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.3029 1.9626 1.2687 5 6 3.7031 1.6141 1.7037 6 6 4.7670 2.4014 1.3047 7 6 6.0512 2.0820 1.7042 8 6 6.2715 0.9756 2.5032 9 6 5.2083 0.1853 2.8978 10 6 3.9235 0.5072 2.5020 11 16 2.3418 2.0500 -1.4341 12 8 1.3482 1.5660 -2.3273 13 8 2.4134 3.4280 -1.0950 14 6 3.9785 1.4237 -1.9027 15 6 4.4060 2.0561 -3.2288 16 6 3.3916 1.6956 -4.3160 17 6 4.4674 3.5768 -3.0723 18 6 5.7660 1.5362 -3.6177 19 1 6.2687 0.8157 -2.9895 20 6 6.3685 1.9805 -4.7756 21 7 7.4029 1.3348 -5.2680 22 14 5.7154 3.4995 -5.6448 23 1 6.3043 4.7147 -5.0273 24 1 6.0861 3.4452 -7.0818 25 1 4.2367 3.5459 -5.5165 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.5939 1.6335 2.0284 30 1 2.2210 3.0417 1.1384 31 1 4.5948 3.2660 0.6809 32 1 6.8824 2.6973 1.3928 33 1 7.2748 0.7264 2.8156 34 1 5.3809 -0.6815 3.5184 35 1 3.0922 -0.1077 2.8140 36 1 4.7011 1.6801 -1.1279 37 1 3.9347 0.3404 -2.0145 38 1 2.4557 2.2219 -4.1285 39 1 3.7838 1.9878 -5.2901 40 1 3.2126 0.6205 -4.3040 41 1 5.1900 3.8335 -2.2978 42 1 4.7715 4.0272 -4.0172 43 1 3.4839 3.9530 -2.7908 44 1 7.8267 1.6471 -6.0829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295136251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:20 Heat of formation + Delta-G solvation = -15.773791 kcal Electronic energy + Delta-G solvation = -27803.880122 eV Core-core repulsion = 24044.972594 eV Total energy + Delta-G solvation = -3758.907528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.33128 -37.68087 -36.89426 -36.73122 -35.63445 -33.87705 -31.94940 -30.86767 -30.42136 -27.52045 -26.87123 -26.40507 -25.18994 -24.95306 -22.56649 -21.40370 -19.85685 -19.18653 -17.88416 -17.35198 -16.67263 -16.19883 -15.92708 -15.53534 -15.25705 -15.06623 -14.97587 -14.85597 -14.34877 -13.55046 -13.38612 -13.30999 -13.19537 -12.96493 -12.80888 -12.60574 -12.47696 -12.35973 -12.07478 -11.78597 -11.62288 -11.53107 -11.37101 -11.15636 -11.03584 -10.92048 -10.78908 -10.29530 -10.18760 -10.07577 -10.01829 -9.43798 -9.02530 -8.85581 -8.78931 -8.73316 -8.47181 -6.18580 -4.15780 0.34056 1.31224 1.44913 2.28215 3.24433 3.33283 3.38239 3.71227 3.84854 4.03327 4.33901 4.53179 4.72632 4.82386 5.04490 5.09774 5.14573 5.17625 5.20990 5.32098 5.35480 5.43679 5.51721 5.56676 5.60059 5.68438 5.77374 5.97628 6.00534 6.08435 6.21004 6.29082 6.42428 6.47583 6.48077 6.56283 6.58658 6.66468 6.85719 6.90727 7.02517 7.11523 7.30343 7.61962 8.39962 8.85393 9.44977 10.93915 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.005656 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.758823 B = 4949.587088 C = 6262.444389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.119 6.119 3 N -0.868 5.868 4 C 0.145 3.855 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.124 4.124 10 C -0.095 4.095 11 S 2.586 3.414 12 O -0.951 6.951 13 O -0.950 6.950 14 C -0.561 4.561 15 C 0.055 3.945 16 C -0.171 4.171 17 C -0.182 4.182 18 C -0.505 4.505 19 H 0.079 0.921 20 C 0.078 3.922 21 N -0.888 5.888 22 Si 0.872 3.128 23 H -0.280 1.280 24 H -0.300 1.300 25 H -0.246 1.246 26 H 0.104 0.896 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -0.524 16.189 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.127 6.127 3 N -0.741 5.741 4 C 0.020 3.980 5 C -0.116 4.116 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.133 4.133 9 C -0.142 4.142 10 C -0.114 4.114 11 S 2.686 3.314 12 O -0.941 6.941 13 O -0.940 6.940 14 C -0.695 4.695 15 C 0.052 3.948 16 C -0.229 4.229 17 C -0.239 4.239 18 C -0.544 4.544 19 H 0.097 0.903 20 C -0.125 4.125 21 N -0.524 5.524 22 Si 0.703 3.297 23 H -0.208 1.208 24 H -0.229 1.229 25 H -0.172 1.172 26 H 0.122 0.878 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.813 -0.119 15.663 18.483 hybrid contribution 0.167 0.328 -0.308 0.480 sum -9.646 0.209 15.355 18.135 Atomic orbital electron populations 1.23471 0.82146 1.03822 1.01821 1.90550 1.19808 1.05677 1.96631 1.60659 1.72397 1.19606 1.21400 1.20583 0.93154 0.97945 0.86288 1.20211 0.95515 0.96664 0.99188 1.21313 0.92652 0.99887 0.99431 1.21210 0.96972 0.97458 0.97464 1.21211 0.98971 0.95190 0.97896 1.21131 0.92815 0.99659 1.00636 1.20987 0.97072 0.95942 0.97383 1.06292 0.79032 0.74238 0.71836 1.93539 1.56969 1.81237 1.62392 1.93559 1.88440 1.29913 1.82134 1.30382 1.17845 1.12305 1.08974 1.18271 0.97922 0.91256 0.87382 1.22696 0.97069 1.01701 1.01406 1.22835 1.01145 0.97937 1.01954 1.20624 0.99321 1.26337 1.08101 0.90260 1.24950 0.94849 0.96564 0.96154 1.69934 1.23044 1.38263 1.21160 0.87474 0.80457 0.84088 0.77650 1.20764 1.22856 1.17231 0.87774 0.93160 0.91652 0.88757 0.87043 0.85184 0.85551 0.86086 0.86177 0.86123 0.85332 0.85085 0.94620 0.91337 0.92186 0.91662 0.92870 0.93425 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 11.28 101.05 1.14 0.98 16 2 O -0.12 -1.69 11.34 -22.58 -0.26 -1.94 16 3 N -0.87 -12.85 3.21 -11.66 -0.04 -12.89 16 4 C 0.14 1.77 6.09 -5.19 -0.03 1.74 16 5 C -0.11 -1.45 5.46 -104.62 -0.57 -2.02 16 6 C -0.11 -1.54 8.15 -39.59 -0.32 -1.86 16 7 C -0.11 -1.44 10.05 -39.58 -0.40 -1.83 16 8 C -0.11 -1.32 10.05 -39.58 -0.40 -1.72 16 9 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 10 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 11 S 2.59 46.84 4.62 -107.50 -0.50 46.35 16 12 O -0.95 -19.11 14.49 -63.08 -0.91 -20.02 16 13 O -0.95 -17.73 14.10 -57.54 -0.81 -18.54 16 14 C -0.56 -10.95 5.10 37.16 0.19 -10.76 16 15 C 0.05 1.26 0.52 -155.65 -0.08 1.18 16 16 C -0.17 -3.91 6.95 37.16 0.26 -3.65 16 17 C -0.18 -4.03 7.22 37.16 0.27 -3.77 16 18 C -0.51 -13.62 8.62 -34.44 -0.30 -13.92 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.08 2.19 5.31 -17.82 -0.09 2.09 16 21 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 22 Si 0.87 21.39 22.79 -169.99 -3.87 17.52 16 23 H -0.28 -6.75 7.10 56.52 0.40 -6.35 16 24 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.25 -5.67 4.67 56.52 0.26 -5.40 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.83 7.17 -51.93 -0.37 0.46 16 29 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.11 1.32 6.82 -51.93 -0.35 0.97 16 31 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 2.35 6.51 -51.92 -0.34 2.01 16 37 H 0.13 2.47 8.14 -51.93 -0.42 2.05 16 38 H 0.03 0.76 6.21 -51.93 -0.32 0.44 16 39 H 0.07 1.60 4.32 -51.93 -0.22 1.37 16 40 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.05 1.22 2.28 -51.93 -0.12 1.10 16 43 H 0.05 0.98 5.46 -51.93 -0.28 0.70 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -32.31 352.04 -7.78 -40.09 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.35 Total: 6.52 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: -1.12 Total: -36.79 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.74 Total: -38.48 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.98 Total: -40.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -3.87 Total: 17.52 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.50 Total: 46.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.31 -7.78 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295136251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.321 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds