Wall clock time and date at job start Tue Mar 31 2020 15:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41593 * 114.00298 * 2 1 4 4 C 1.46500 * 119.99866 * 90.00111 * 3 2 1 5 5 C 1.50704 * 109.47206 * 90.00338 * 4 3 2 6 6 C 1.38233 * 120.00265 * 89.99789 * 5 4 3 7 7 C 1.38233 * 120.00060 * 179.97438 * 6 5 4 8 8 C 1.38244 * 119.99881 * 359.97438 * 7 6 5 9 9 C 1.38231 * 120.00148 * 0.28237 * 8 7 6 10 10 C 1.38240 * 119.99750 * 359.50476 * 9 8 7 11 11 S 1.65603 * 120.00437 * 269.99926 * 3 2 1 12 12 O 1.42104 * 104.27105 * 31.07094 * 11 3 2 13 13 O 1.42094 * 104.27800 * 158.92553 * 11 3 2 14 14 C 1.81399 * 104.44997 * 275.00414 * 11 3 2 15 15 C 1.53007 * 109.46772 * 179.97438 * 14 11 3 16 16 C 1.53001 * 109.46761 * 299.99458 * 15 14 11 17 17 C 1.52998 * 109.47287 * 59.99990 * 15 14 11 18 18 C 1.50706 * 109.46619 * 179.97438 * 15 14 11 19 19 H 1.07999 * 120.00037 * 0.83417 * 18 15 14 20 20 C 1.37878 * 119.99471 * 180.83681 * 18 15 14 21 21 N 1.31510 * 119.99614 * 194.57726 * 20 18 15 22 22 Si 1.86802 * 120.00139 * 14.57442 * 20 18 15 23 23 H 1.48491 * 109.46964 * 84.45759 * 22 20 18 24 24 H 1.48502 * 109.46745 * 204.45314 * 22 20 18 25 25 H 1.48499 * 109.47117 * 324.45275 * 22 20 18 26 26 H 1.08996 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47192 * 300.00016 * 1 2 3 28 28 H 1.09005 * 109.47501 * 59.99694 * 1 2 3 29 29 H 1.08993 * 109.47345 * 329.99868 * 4 3 2 30 30 H 1.09005 * 109.47278 * 209.99646 * 4 3 2 31 31 H 1.07995 * 119.99850 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.00470 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.99855 * 180.02562 * 8 7 6 34 34 H 1.07997 * 120.00307 * 179.72724 * 9 8 7 35 35 H 1.08002 * 120.00123 * 180.27550 * 10 9 8 36 36 H 1.09001 * 109.46866 * 299.99516 * 14 11 3 37 37 H 1.08993 * 109.47280 * 59.99585 * 14 11 3 38 38 H 1.08999 * 109.46838 * 70.24069 * 16 15 14 39 39 H 1.09003 * 109.46753 * 190.23539 * 16 15 14 40 40 H 1.08997 * 109.47333 * 310.23595 * 16 15 14 41 41 H 1.09001 * 109.47469 * 59.99694 * 17 15 14 42 42 H 1.08999 * 109.46777 * 180.02562 * 17 15 14 43 43 H 1.09002 * 109.46662 * 299.99853 * 17 15 14 44 44 H 0.97008 * 120.00352 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.3029 1.9626 1.2687 5 6 3.7031 1.6141 1.7037 6 6 4.7670 2.4014 1.3047 7 6 6.0512 2.0820 1.7042 8 6 6.2715 0.9756 2.5032 9 6 5.2083 0.1853 2.8978 10 6 3.9235 0.5072 2.5020 11 16 2.3418 2.0500 -1.4341 12 8 1.3482 1.5660 -2.3273 13 8 2.4134 3.4280 -1.0950 14 6 3.9785 1.4237 -1.9027 15 6 4.4060 2.0561 -3.2288 16 6 3.3916 1.6956 -4.3160 17 6 4.4674 3.5768 -3.0723 18 6 5.7660 1.5362 -3.6177 19 1 6.2687 0.8157 -2.9895 20 6 6.3685 1.9805 -4.7756 21 7 7.4029 1.3348 -5.2680 22 14 5.7154 3.4995 -5.6448 23 1 6.3043 4.7147 -5.0273 24 1 6.0861 3.4452 -7.0818 25 1 4.2367 3.5459 -5.5165 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.5939 1.6335 2.0284 30 1 2.2210 3.0417 1.1384 31 1 4.5948 3.2660 0.6809 32 1 6.8824 2.6973 1.3928 33 1 7.2748 0.7264 2.8156 34 1 5.3809 -0.6815 3.5184 35 1 3.0922 -0.1077 2.8140 36 1 4.7011 1.6801 -1.1279 37 1 3.9347 0.3404 -2.0145 38 1 2.4557 2.2219 -4.1285 39 1 3.7838 1.9878 -5.2901 40 1 3.2126 0.6205 -4.3040 41 1 5.1900 3.8335 -2.2978 42 1 4.7715 4.0272 -4.0172 43 1 3.4839 3.9530 -2.7908 44 1 7.8267 1.6471 -6.0829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295136251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:19 Heat of formation + Delta-G solvation = -36.702939 kcal Electronic energy + Delta-G solvation = -27804.787678 eV Core-core repulsion = 24044.972594 eV Total energy + Delta-G solvation = -3759.815084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25182 -38.83126 -38.49945 -38.27711 -37.14470 -34.87913 -34.05994 -31.77223 -31.42613 -29.11390 -28.19578 -27.79004 -27.12397 -26.12166 -23.47761 -22.37861 -21.54818 -20.56611 -19.27499 -18.45612 -18.17512 -17.72692 -17.34262 -17.09753 -16.62217 -16.30364 -15.93388 -15.88339 -15.44309 -15.18113 -15.00038 -14.82516 -14.37502 -14.25965 -14.23337 -14.13362 -13.82843 -13.50094 -13.34655 -13.28028 -13.15291 -12.85919 -12.73463 -12.64670 -12.51701 -12.29120 -12.03582 -11.90232 -11.88326 -11.79198 -11.29288 -11.00403 -10.70334 -10.62433 -10.35286 -9.78256 -9.70034 -8.34821 -6.34855 -1.04803 0.34571 0.53033 1.07915 1.30048 1.34086 1.42967 2.29154 2.53809 2.60024 2.90007 2.98796 3.21527 3.70153 3.80127 3.91675 3.99473 4.18269 4.19714 4.27973 4.32770 4.40343 4.46712 4.50658 4.55378 4.56936 4.61561 4.64735 4.68394 4.74184 4.81755 4.82045 4.90656 5.10313 5.11719 5.19070 5.33321 5.49894 5.58626 5.60629 5.65225 5.66034 5.88823 6.13598 6.26088 6.67371 7.28922 8.81199 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.005656 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.758823 B = 4949.587088 C = 6262.444389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 O -0.131 6.131 3 N -0.863 5.863 4 C 0.140 3.860 5 C -0.124 4.124 6 C -0.134 4.134 7 C -0.133 4.133 8 C -0.122 4.122 9 C -0.127 4.127 10 C -0.098 4.098 11 S 2.613 3.387 12 O -0.971 6.971 13 O -0.955 6.955 14 C -0.573 4.573 15 C 0.047 3.953 16 C -0.176 4.176 17 C -0.187 4.187 18 C -0.503 4.503 19 H 0.045 0.955 20 C 0.027 3.973 21 N -0.935 5.935 22 Si 0.916 3.084 23 H -0.272 1.272 24 H -0.304 1.304 25 H -0.221 1.221 26 H 0.133 0.867 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -0.362 17.997 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 O -0.138 6.138 3 N -0.739 5.739 4 C 0.017 3.983 5 C -0.126 4.126 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.140 4.140 9 C -0.145 4.145 10 C -0.117 4.117 11 S 2.710 3.290 12 O -0.961 6.961 13 O -0.946 6.946 14 C -0.706 4.706 15 C 0.045 3.955 16 C -0.233 4.233 17 C -0.243 4.243 18 C -0.542 4.542 19 H 0.063 0.937 20 C -0.171 4.171 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.198 1.198 24 H -0.233 1.233 25 H -0.145 1.145 26 H 0.151 0.849 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.887 0.044 17.475 21.135 hybrid contribution 0.798 0.146 -0.708 1.077 sum -11.089 0.190 16.767 20.103 Atomic orbital electron populations 1.23745 0.80374 1.05859 1.02148 1.90539 1.21686 1.04830 1.96706 1.60242 1.72365 1.20127 1.21172 1.20860 0.93773 0.97964 0.85725 1.20315 0.95458 0.97112 0.99689 1.21408 0.93430 1.00315 1.00166 1.21407 0.97027 0.98363 0.98259 1.21512 1.00301 0.94758 0.97406 1.21496 0.92483 1.00145 1.00369 1.21292 0.98048 0.95593 0.96723 1.05284 0.77613 0.73936 0.72195 1.93513 1.56897 1.81638 1.64073 1.93547 1.88177 1.30378 1.82492 1.30416 1.20438 1.12195 1.07513 1.18220 0.95789 0.92171 0.89353 1.22709 0.97600 1.02188 1.00834 1.22851 1.02495 0.96972 1.02028 1.20846 1.00987 1.25103 1.07233 0.93655 1.25671 0.95162 0.99123 0.97181 1.70058 1.25006 1.40177 1.22114 0.86719 0.81611 0.80894 0.76280 1.19819 1.23256 1.14511 0.84882 0.90656 0.93477 0.85431 0.86825 0.85962 0.85323 0.84288 0.83614 0.84001 0.84711 0.85220 0.93052 0.92085 0.91991 0.90819 0.93447 0.91681 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.45 11.28 113.37 1.28 0.83 16 2 O -0.13 -3.37 11.34 -28.14 -0.32 -3.69 16 3 N -0.86 -23.63 3.21 -190.79 -0.61 -24.24 16 4 C 0.14 3.06 6.09 85.63 0.52 3.58 16 5 C -0.12 -2.93 5.46 -19.86 -0.11 -3.04 16 6 C -0.13 -3.55 8.15 22.27 0.18 -3.37 16 7 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 8 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 9 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 10 C -0.10 -2.02 9.70 22.27 0.22 -1.80 16 11 S 2.61 90.47 4.62 -56.49 -0.26 90.21 16 12 O -0.97 -37.43 14.49 -122.35 -1.77 -39.20 16 13 O -0.96 -33.88 14.10 -127.65 -1.80 -35.68 16 14 C -0.57 -22.21 5.10 71.98 0.37 -21.84 16 15 C 0.05 2.17 0.52 -52.92 -0.03 2.14 16 16 C -0.18 -7.86 6.95 71.98 0.50 -7.36 16 17 C -0.19 -8.03 7.22 71.98 0.52 -7.51 16 18 C -0.50 -27.72 8.62 25.60 0.22 -27.50 16 19 H 0.05 2.73 7.99 -2.91 -0.02 2.71 16 20 C 0.03 1.56 5.31 84.66 0.45 2.01 16 21 N -0.93 -57.20 13.96 21.45 0.30 -56.90 16 22 Si 0.92 43.77 22.79 68.60 1.56 45.33 16 23 H -0.27 -12.50 7.10 99.48 0.71 -11.80 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 25 H -0.22 -9.59 4.67 99.48 0.46 -9.12 16 26 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.05 1.09 7.17 -2.38 -0.02 1.08 16 29 H 0.13 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.11 2.45 6.82 -2.38 -0.02 2.43 16 31 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.13 4.96 6.51 -2.39 -0.02 4.94 16 37 H 0.13 4.94 8.14 -2.39 -0.02 4.92 16 38 H 0.05 2.11 6.21 -2.39 -0.01 2.09 16 39 H 0.06 2.77 4.32 -2.39 -0.01 2.76 16 40 H 0.06 2.68 8.11 -2.39 -0.02 2.66 16 41 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.05 2.08 2.28 -2.39 -0.01 2.07 16 43 H 0.06 2.55 5.46 -2.39 -0.01 2.54 16 44 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -69.91 352.04 2.64 -67.27 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.76 Total: 28.60 kcal Atomic # 6 Polarization: -76.48 SS G_CDS: 4.79 Total: -71.69 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -0.31 Total: -81.15 kcal Atomic # 8 Polarization: -74.68 SS G_CDS: -3.89 Total: -78.57 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.56 Total: 45.33 kcal Atomic # 16 Polarization: 90.47 SS G_CDS: -0.26 Total: 90.21 kcal Total: -69.91 2.64 -67.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295136251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.564 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds