Wall clock time and date at job start Tue Mar 31 2020 15:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46756 * 2 1 4 4 H 1.09005 * 109.47167 * 178.56686 * 3 2 1 5 5 C 1.50705 * 109.47189 * 298.56226 * 3 2 1 6 6 H 1.07999 * 119.99815 * 120.00099 * 5 3 2 7 7 C 1.37882 * 120.00078 * 300.00172 * 5 3 2 8 8 N 1.31512 * 120.00073 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99868 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46930 * 89.99851 * 9 7 5 11 11 H 1.48491 * 109.46975 * 209.99777 * 9 7 5 12 12 H 1.48495 * 109.47234 * 329.99861 * 9 7 5 13 13 N 1.46498 * 109.47381 * 58.56532 * 3 2 1 14 14 S 1.65599 * 119.99762 * 96.08484 * 13 3 2 15 15 O 1.42099 * 104.27272 * 180.90897 * 14 13 3 16 16 O 1.42099 * 104.27725 * 308.75928 * 14 13 3 17 17 C 1.81393 * 104.45369 * 64.83693 * 14 13 3 18 18 C 1.52997 * 109.47430 * 180.02562 * 17 14 13 19 19 H 1.08997 * 109.47358 * 59.99652 * 18 17 14 20 20 O 1.42903 * 109.46568 * 299.99905 * 18 17 14 21 21 C 1.42898 * 113.99768 * 150.00265 * 20 18 17 22 22 C 1.50702 * 109.47145 * 179.97438 * 18 17 14 23 23 C 1.38232 * 119.99847 * 84.72796 * 22 18 17 24 24 C 1.38238 * 119.99900 * 179.78965 * 23 22 18 25 25 C 1.38241 * 119.99437 * 0.43419 * 24 23 22 26 26 C 1.38234 * 120.00260 * 359.81676 * 25 24 23 27 27 C 1.38230 * 119.99900 * 359.97401 * 26 25 24 28 28 H 1.08993 * 109.46983 * 295.31275 * 1 2 3 29 29 H 1.09004 * 109.47109 * 55.31287 * 1 2 3 30 30 H 1.08999 * 109.46915 * 175.31094 * 1 2 3 31 31 H 1.09005 * 109.47211 * 240.00399 * 2 1 3 32 32 H 1.09001 * 109.47260 * 119.99795 * 2 1 3 33 33 H 0.96995 * 120.00294 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99663 * 275.80880 * 13 3 2 35 35 H 1.09008 * 109.46794 * 299.99839 * 17 14 13 36 36 H 1.08997 * 109.47134 * 59.99518 * 17 14 13 37 37 H 1.08998 * 109.47617 * 180.02562 * 21 20 18 38 38 H 1.09002 * 109.46973 * 299.99909 * 21 20 18 39 39 H 1.09001 * 109.47806 * 59.99246 * 21 20 18 40 40 H 1.08001 * 120.00331 * 359.97438 * 23 22 18 41 41 H 1.08001 * 120.00103 * 180.27545 * 24 23 22 42 42 H 1.08008 * 119.99494 * 179.83632 * 25 24 23 43 43 H 1.08000 * 119.99873 * 180.02562 * 26 25 24 44 44 H 1.08005 * 119.99759 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1297 1.4427 0.0257 5 6 1.5669 2.1426 -1.2479 6 1 0.9439 3.0214 -1.1709 7 6 1.9295 1.6611 -2.4880 8 7 1.5170 2.2723 -3.5770 9 14 3.0077 0.1415 -2.6213 10 1 2.1507 -1.0701 -2.6765 11 1 3.8287 0.2238 -3.8558 12 1 3.9005 0.0627 -1.4373 13 7 1.5236 2.1431 1.1785 14 16 2.4517 2.2598 2.5450 15 8 1.6336 2.9700 3.4645 16 8 2.8589 0.9239 2.8072 17 6 3.8713 3.2713 2.0431 18 6 4.8147 3.4528 3.2339 19 1 5.1648 2.4776 3.5720 20 8 4.1182 4.1042 4.2982 21 6 4.5847 3.7487 5.6013 22 6 5.9944 4.2926 2.8166 23 6 5.9040 5.6718 2.8407 24 6 6.9876 6.4421 2.4622 25 6 8.1586 5.8332 2.0510 26 6 8.2471 4.4540 2.0220 27 6 7.1650 3.6837 2.4046 28 1 -0.3633 0.4394 0.9289 29 1 -0.3633 0.5849 -0.8450 30 1 -0.3633 -1.0242 -0.0840 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.7718 1.9334 -4.4494 34 1 0.6397 2.5420 1.1569 35 1 4.4028 2.7741 1.2315 36 1 3.5211 4.2463 1.7045 37 1 4.0055 4.2845 6.3533 38 1 4.4666 2.6753 5.7491 39 1 5.6375 4.0148 5.6955 40 1 4.9878 6.1475 3.1581 41 1 6.9185 7.5197 2.4852 42 1 9.0043 6.4351 1.7527 43 1 9.1621 3.9783 1.7011 44 1 7.2341 2.6061 2.3816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295141911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:03 Heat of formation + Delta-G solvation = -89.367015 kcal Electronic energy + Delta-G solvation = -26794.573811 eV Core-core repulsion = 23032.475041 eV Total energy + Delta-G solvation = -3762.098770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.83146 -37.81670 -36.77787 -36.20680 -35.45220 -33.03235 -32.26493 -31.00474 -30.80288 -29.77890 -26.88917 -26.66981 -24.21871 -23.34653 -22.66871 -21.15040 -20.46922 -18.73761 -17.75818 -17.18998 -16.92830 -16.28033 -16.20503 -15.67937 -15.51420 -14.99191 -14.85772 -14.62832 -14.48406 -13.78987 -13.49859 -13.46685 -13.20282 -13.12646 -12.97995 -12.74984 -12.55402 -12.05186 -11.96356 -11.63853 -11.56538 -11.53334 -11.45017 -11.23407 -11.00791 -10.93657 -10.68392 -10.65868 -10.56781 -10.06466 -9.90182 -9.49043 -9.32189 -9.03306 -8.90616 -8.77683 -8.42920 -6.23364 -4.24844 0.70154 1.19582 1.29484 3.18674 3.26022 3.29056 3.30725 3.43650 3.63447 4.16467 4.26062 4.48470 4.60207 4.69570 4.80618 4.88107 4.92971 5.02720 5.08275 5.21336 5.24909 5.34578 5.38653 5.48691 5.57692 5.79773 5.84162 5.90375 5.92349 5.96849 6.21159 6.31852 6.33453 6.38352 6.39719 6.71743 6.81308 6.86428 6.92029 6.95130 7.11912 7.24796 7.41300 7.86833 8.35129 8.79627 9.36422 10.88823 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.004607 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.594036 B = 6076.872852 C = 7452.881136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.145 4.145 3 C 0.249 3.751 4 H 0.035 0.965 5 C -0.524 4.524 6 H 0.084 0.916 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.265 1.265 13 N -1.094 6.094 14 S 2.613 3.387 15 O -0.958 6.958 16 O -0.965 6.965 17 C -0.632 4.632 18 C 0.141 3.859 19 H 0.083 0.917 20 O -0.372 6.372 21 C 0.025 3.975 22 C -0.103 4.103 23 C -0.092 4.092 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.111 4.111 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.414 0.586 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 4.104 13.316 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.142 3.858 4 H 0.052 0.948 5 C -0.563 4.563 6 H 0.102 0.898 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.221 1.221 12 H -0.190 1.190 13 N -0.854 5.854 14 S 2.703 3.297 15 O -0.948 6.948 16 O -0.955 6.955 17 C -0.759 4.759 18 C 0.082 3.918 19 H 0.101 0.899 20 O -0.291 6.291 21 C -0.072 4.072 22 C -0.104 4.104 23 C -0.110 4.110 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.129 4.129 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.249 0.751 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.919 3.772 13.921 18.090 hybrid contribution 0.870 -0.427 -0.932 1.345 sum 11.790 3.344 12.989 17.858 Atomic orbital electron populations 1.21571 0.95761 0.99682 1.02206 1.22272 0.97463 0.98825 0.99885 1.18922 0.93395 0.88853 0.84587 0.94764 1.21063 1.33612 1.13625 0.87975 0.89766 1.24870 0.95409 0.96659 0.95626 1.69862 1.44804 1.40171 0.97875 0.87026 0.81064 0.83919 0.77377 1.19932 1.22149 1.18955 1.55374 1.28961 1.70077 1.30958 1.04753 0.75891 0.75260 0.73794 1.93559 1.64565 1.75415 1.61254 1.93571 1.84155 1.33671 1.84098 1.30861 1.19686 1.18649 1.06656 1.20512 0.89588 0.95247 0.86451 0.89908 1.88054 1.58692 1.68255 1.14083 1.22924 0.99659 1.00418 0.84159 1.20132 0.94615 0.94715 1.00986 1.21042 0.98977 0.93029 0.97960 1.21184 0.93369 0.99930 0.99604 1.21192 0.97976 0.94876 0.99653 1.21104 0.98586 0.94011 1.00251 1.21060 0.92689 1.00133 0.99060 0.93758 0.90803 0.94913 0.93010 0.92836 0.92315 0.75077 0.83535 0.83674 0.88760 0.93537 0.93580 0.85190 0.85939 0.86136 0.85928 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.52 37.16 0.35 -2.33 16 2 C -0.15 -3.13 5.39 -26.73 -0.14 -3.28 16 3 C 0.25 5.44 1.96 -69.08 -0.14 5.31 16 4 H 0.03 0.74 6.21 -51.93 -0.32 0.41 16 5 C -0.52 -13.26 8.07 -34.44 -0.28 -13.54 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 7 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.89 -25.42 13.96 55.43 0.77 -24.64 16 9 Si 0.88 20.55 24.39 -169.99 -4.15 16.40 16 10 H -0.27 -6.29 6.86 56.52 0.39 -5.90 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -5.88 6.53 56.52 0.37 -5.51 16 13 N -1.09 -20.84 4.64 -5.88 -0.03 -20.87 16 14 S 2.61 46.04 5.17 -107.50 -0.56 45.49 16 15 O -0.96 -18.47 17.41 -61.89 -1.08 -19.55 16 16 O -0.96 -19.01 17.25 -57.54 -0.99 -20.01 16 17 C -0.63 -9.40 5.66 37.16 0.21 -9.19 16 18 C 0.14 1.91 2.37 -27.88 -0.07 1.85 16 19 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 20 O -0.37 -5.18 8.55 -41.95 -0.36 -5.54 16 21 C 0.02 0.26 10.81 101.05 1.09 1.36 16 22 C -0.10 -1.31 4.96 -104.62 -0.52 -1.83 16 23 C -0.09 -1.12 9.35 -39.58 -0.37 -1.49 16 24 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 27 C -0.11 -1.28 9.68 -39.59 -0.38 -1.67 16 28 H 0.04 0.81 7.62 -51.93 -0.40 0.41 16 29 H 0.07 1.59 7.11 -51.93 -0.37 1.22 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.16 3.25 -51.93 -0.17 0.99 16 32 H 0.05 1.11 7.56 -51.93 -0.39 0.72 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.41 7.47 8.67 -34.47 -0.30 7.18 16 35 H 0.15 2.07 7.45 -51.92 -0.39 1.68 16 36 H 0.15 2.06 8.14 -51.93 -0.42 1.63 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.13 1.54 7.64 -52.49 -0.40 1.14 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -32.12 367.66 -8.91 -41.04 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.54 Total: 9.92 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -1.53 Total: -27.78 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.75 Total: -45.51 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -2.43 Total: -45.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.15 Total: 16.40 kcal Atomic # 16 Polarization: 46.04 SS G_CDS: -0.56 Total: 45.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.12 -8.91 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295141911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.332 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds