Wall clock time and date at job start Tue Mar 31 2020 15:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 O 1.41600 * 120.00337 * 2 1 4 4 C 1.42893 * 113.99989 * 89.99584 * 3 2 1 5 5 C 1.50707 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99792 * 89.99993 * 5 4 3 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.97124 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00179 * 269.97930 * 5 4 3 11 11 S 1.65607 * 119.99905 * 179.97438 * 2 1 3 12 12 O 1.42098 * 104.27862 * 211.07606 * 11 2 1 13 13 O 1.42106 * 104.27668 * 338.93358 * 11 2 1 14 14 C 1.81403 * 104.44841 * 95.00215 * 11 2 1 15 15 C 1.52998 * 109.47113 * 180.02562 * 14 11 2 16 16 C 1.52998 * 109.47076 * 300.00277 * 15 14 11 17 17 C 1.52997 * 109.46985 * 60.00195 * 15 14 11 18 18 C 1.50696 * 109.47078 * 180.02562 * 15 14 11 19 19 H 1.08006 * 120.00284 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00113 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99918 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00053 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.46985 * 59.99876 * 22 20 18 24 24 H 1.48494 * 109.46929 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46814 * 299.99937 * 22 20 18 26 26 H 1.09003 * 109.46597 * 90.00160 * 1 2 3 27 27 H 1.08991 * 109.47435 * 210.00123 * 1 2 3 28 28 H 1.08998 * 109.47112 * 330.01102 * 1 2 3 29 29 H 1.09005 * 109.47744 * 60.00324 * 4 3 2 30 30 H 1.09000 * 109.47353 * 299.99523 * 4 3 2 31 31 H 1.08005 * 120.00068 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 33 33 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 35 35 H 1.07999 * 119.99968 * 359.97438 * 10 5 4 36 36 H 1.09001 * 109.47256 * 300.00309 * 14 11 2 37 37 H 1.09004 * 109.46843 * 59.99817 * 14 11 2 38 38 H 1.08998 * 109.47287 * 59.99993 * 16 15 14 39 39 H 1.08995 * 109.47257 * 179.97438 * 16 15 14 40 40 H 1.09005 * 109.47190 * 299.99867 * 16 15 14 41 41 H 1.09001 * 109.47122 * 59.99963 * 17 15 14 42 42 H 1.09000 * 109.47352 * 180.02562 * 17 15 14 43 43 H 1.08998 * 109.47169 * 299.99879 * 17 15 14 44 44 H 0.96998 * 120.00420 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1730 1.2263 0.0000 4 6 2.4636 1.7296 1.3054 5 6 3.2154 3.0303 1.1864 6 6 2.5237 4.2259 1.1315 7 6 3.2133 5.4190 1.0229 8 6 4.5946 5.4166 0.9697 9 6 5.2861 4.2207 1.0192 10 6 4.5967 3.0279 1.1325 11 16 2.2930 -1.4342 0.0006 12 8 3.4897 -1.1477 0.7113 13 8 1.3552 -2.3800 0.4961 14 6 2.6519 -1.7504 -1.7492 15 6 3.4235 -3.0649 -1.8821 16 6 4.7359 -2.9670 -1.1018 17 6 2.5799 -4.2105 -1.3195 18 6 3.7223 -3.3272 -3.3357 19 1 3.3949 -2.6262 -4.0894 20 6 4.4135 -4.4621 -3.7035 21 7 4.8117 -5.3159 -2.7859 22 14 4.7844 -4.7869 -5.5053 23 1 5.6043 -3.6751 -6.0501 24 1 5.5321 -6.0634 -5.6344 25 1 3.5111 -4.8808 -6.2636 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5137 29 1 3.0735 1.0061 1.8465 30 1 1.5320 1.8962 1.8463 31 1 1.4444 4.2278 1.1735 32 1 2.6729 6.3531 0.9796 33 1 5.1334 6.3489 0.8853 34 1 6.3651 4.2185 0.9733 35 1 5.1371 2.0939 1.1762 36 1 1.7169 -1.8205 -2.3050 37 1 3.2525 -0.9339 -2.1501 38 1 4.5202 -2.7770 -0.0504 39 1 5.2854 -3.9036 -1.1961 40 1 5.3370 -2.1507 -1.5026 41 1 1.6449 -4.2802 -1.8754 42 1 3.1297 -5.1470 -1.4137 43 1 2.3642 -4.0206 -0.2681 44 1 5.2983 -6.1141 -3.0446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295160423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:17 Heat of formation + Delta-G solvation = -52.728528 kcal Electronic energy + Delta-G solvation = -26560.093077 eV Core-core repulsion = 22799.583071 eV Total energy + Delta-G solvation = -3760.510006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31799 -38.72038 -38.29937 -38.14166 -37.06304 -34.45764 -33.64959 -32.31397 -31.82831 -28.48327 -27.71236 -27.48721 -27.26616 -26.11040 -23.51270 -22.31260 -21.39395 -20.61322 -19.18747 -18.26724 -17.95158 -17.91366 -17.11020 -16.74365 -16.67483 -16.41572 -16.30133 -15.48270 -15.16264 -14.80591 -14.76002 -14.45819 -14.35643 -14.27481 -14.03182 -13.95642 -13.71931 -13.45204 -13.26520 -13.05857 -12.95026 -12.84298 -12.81470 -12.53669 -12.21065 -12.19817 -12.02697 -12.00809 -11.97703 -11.59110 -11.48082 -11.21966 -10.73746 -10.41939 -10.38962 -9.85833 -9.78277 -8.04023 -6.22799 -0.98402 0.23131 0.46657 1.08980 1.45763 1.46070 1.53500 2.43776 2.46961 2.70311 2.93070 3.18044 3.26680 3.77885 3.83668 3.97121 4.09724 4.11510 4.22636 4.28022 4.30719 4.46320 4.56172 4.57976 4.61461 4.71406 4.73989 4.83560 4.84843 4.89356 4.95428 5.02225 5.06287 5.13087 5.36049 5.49027 5.51163 5.58055 5.61913 5.63559 5.83025 5.96044 6.06023 6.09389 6.32579 6.81047 7.45403 8.95826 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.003413 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.810665 B = 8201.804655 C = 9086.629347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.876 5.876 3 O -0.124 6.124 4 C 0.056 3.944 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.126 4.126 8 C -0.113 4.113 9 C -0.131 4.131 10 C -0.119 4.119 11 S 2.614 3.386 12 O -0.976 6.976 13 O -0.963 6.963 14 C -0.576 4.576 15 C 0.070 3.930 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.521 4.521 19 H 0.062 0.938 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 0.955 3.045 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.271 1.271 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 19.917 7.280 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.751 5.751 3 O -0.133 6.133 4 C -0.022 4.022 5 C -0.110 4.110 6 C -0.121 4.121 7 C -0.144 4.144 8 C -0.131 4.131 9 C -0.149 4.149 10 C -0.137 4.137 11 S 2.712 3.288 12 O -0.967 6.967 13 O -0.954 6.954 14 C -0.709 4.709 15 C 0.067 3.933 16 C -0.217 4.217 17 C -0.219 4.219 18 C -0.560 4.560 19 H 0.080 0.920 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.781 3.219 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.196 1.196 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.160 0.840 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.356 19.367 7.937 21.874 hybrid contribution 0.439 -0.491 -1.242 1.406 sum -5.917 18.876 6.695 20.884 Atomic orbital electron populations 1.22232 0.75682 1.05694 1.04774 1.60134 1.13998 1.09829 1.91164 1.90616 1.70936 1.25565 1.26166 1.22130 1.00004 0.93532 0.86545 1.19531 0.93853 0.93409 1.04179 1.21339 1.00965 0.91553 0.98254 1.21525 0.94714 0.98575 0.99545 1.21614 0.94849 0.98697 0.97896 1.21449 1.01176 0.92189 1.00085 1.21349 0.94071 0.99322 0.98997 1.05292 0.73051 0.71449 0.79035 1.93486 1.48442 1.83201 1.71556 1.93544 1.63504 1.58801 1.79557 1.30447 1.10982 1.08289 1.21230 1.17955 0.91006 0.87300 0.96997 1.22206 1.00188 1.02642 0.96678 1.22221 0.99335 1.02952 0.97346 1.21252 1.36294 1.06965 0.91486 0.91994 1.25664 0.95312 0.95802 1.01226 1.69922 1.38585 1.12052 1.33972 0.85662 0.78387 0.77288 0.80600 1.19858 1.21131 1.19570 0.89959 0.88774 0.87679 0.92135 0.89323 0.84041 0.82930 0.83138 0.84176 0.86665 0.84151 0.85055 0.94847 0.90794 0.94402 0.93701 0.90791 0.94786 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 10.99 127.77 1.40 2.68 16 2 N -0.88 -26.08 3.62 -206.55 -0.75 -26.83 16 3 O -0.12 -3.74 10.97 -28.15 -0.31 -4.05 16 4 C 0.06 1.48 6.33 71.24 0.45 1.93 16 5 C -0.11 -2.63 5.51 -19.86 -0.11 -2.74 16 6 C -0.10 -1.93 9.70 22.27 0.22 -1.72 16 7 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 8 C -0.11 -1.77 10.05 22.27 0.22 -1.55 16 9 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 10 C -0.12 -2.97 9.70 22.27 0.22 -2.75 16 11 S 2.61 98.28 4.62 -56.49 -0.26 98.02 16 12 O -0.98 -41.52 14.27 -122.35 -1.75 -43.27 16 13 O -0.96 -38.53 14.10 -127.65 -1.80 -40.33 16 14 C -0.58 -22.84 5.12 71.98 0.37 -22.47 16 15 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 16 C -0.16 -8.02 7.77 71.98 0.56 -7.46 16 17 C -0.16 -7.91 7.78 71.98 0.56 -7.35 16 18 C -0.52 -27.46 8.01 25.60 0.21 -27.25 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 20 C 0.02 1.04 5.15 84.66 0.44 1.48 16 21 N -0.91 -50.18 9.35 21.45 0.20 -49.98 16 22 Si 0.95 42.27 29.54 68.60 2.03 44.29 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 2.06 6.88 -2.39 -0.02 2.04 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.84 7.11 -2.38 -0.02 1.82 16 30 H 0.09 1.86 8.09 -2.39 -0.02 1.84 16 31 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 37 H 0.13 4.95 8.14 -2.39 -0.02 4.93 16 38 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 39 H 0.07 4.03 6.07 -2.39 -0.01 4.01 16 40 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 43 H 0.03 1.58 5.46 -2.39 -0.01 1.56 16 44 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -67.34 364.84 3.30 -64.04 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.99 Total: 25.99 kcal Atomic # 6 Polarization: -72.83 SS G_CDS: 4.95 Total: -67.88 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -0.55 Total: -76.81 kcal Atomic # 8 Polarization: -83.80 SS G_CDS: -3.85 Total: -87.65 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 98.28 SS G_CDS: -0.26 Total: 98.02 kcal Total: -67.34 3.30 -64.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295160423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.312 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds