Wall clock time and date at job start Tue Mar 31 2020 15:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 H 1.09002 * 109.47287 * 180.95262 * 3 2 1 5 5 C 1.50699 * 109.46860 * 300.94856 * 3 2 1 6 6 H 1.07999 * 119.99862 * 114.80594 * 5 3 2 7 7 C 1.37876 * 120.00149 * 294.80573 * 5 3 2 8 8 N 1.31512 * 120.00204 * 354.17008 * 7 5 3 9 9 Si 1.86799 * 120.00088 * 174.17248 * 7 5 3 10 10 H 1.48506 * 109.47130 * 269.99943 * 9 7 5 11 11 H 1.48496 * 109.47246 * 29.99572 * 9 7 5 12 12 H 1.48502 * 109.47258 * 150.00262 * 9 7 5 13 13 N 1.46499 * 109.47281 * 60.95025 * 3 2 1 14 14 S 1.65596 * 120.00211 * 95.43105 * 13 3 2 15 15 O 1.42101 * 104.27659 * 180.88662 * 14 13 3 16 16 O 1.42101 * 104.27632 * 308.73913 * 14 13 3 17 17 C 1.81397 * 104.45074 * 64.81018 * 14 13 3 18 18 C 1.52997 * 109.47167 * 179.97438 * 17 14 13 19 19 O 1.42897 * 109.47054 * 180.02562 * 18 17 14 20 20 C 1.42903 * 113.99930 * 180.02562 * 19 18 17 21 21 C 1.50706 * 109.47162 * 179.97438 * 20 19 18 22 22 C 1.38232 * 119.99977 * 269.72694 * 21 20 19 23 23 C 1.38235 * 119.99983 * 179.76482 * 22 21 20 24 24 C 1.38229 * 119.99955 * 0.50816 * 23 22 21 25 25 C 1.38234 * 119.99699 * 359.74522 * 24 23 22 26 26 C 1.38228 * 120.00303 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.46931 * 185.12189 * 1 2 3 28 28 H 1.08999 * 109.47267 * 305.11599 * 1 2 3 29 29 H 1.08995 * 109.47064 * 65.12278 * 1 2 3 30 30 H 1.08996 * 109.47595 * 239.99499 * 2 1 3 31 31 H 1.09007 * 109.47337 * 119.99775 * 2 1 3 32 32 H 0.97004 * 120.00051 * 355.78610 * 8 7 5 33 33 H 0.97008 * 119.99550 * 275.43143 * 13 3 2 34 34 H 1.08999 * 109.47095 * 300.00433 * 17 14 13 35 35 H 1.09005 * 109.46494 * 59.99947 * 17 14 13 36 36 H 1.09001 * 109.46737 * 300.00222 * 18 17 14 37 37 H 1.08993 * 109.47235 * 59.99855 * 18 17 14 38 38 H 1.08993 * 109.47131 * 299.99498 * 20 19 18 39 39 H 1.09000 * 109.47527 * 59.99705 * 20 19 18 40 40 H 1.08002 * 120.00031 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.99782 * 180.22975 * 23 22 21 42 42 H 1.08003 * 120.00282 * 179.72395 * 24 23 22 43 43 H 1.08008 * 119.99534 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.00251 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0171 5 6 1.5185 2.1596 -1.2185 6 1 0.8319 2.9857 -1.1064 7 6 1.9180 1.7611 -2.4766 8 7 2.8399 0.8329 -2.6106 9 14 1.1496 2.5397 -3.9908 10 1 -0.0476 1.7596 -4.3951 11 1 0.7492 3.9356 -3.6805 12 1 2.1363 2.5428 -5.1006 13 7 1.5705 2.1265 1.2074 14 16 2.5451 2.2104 2.5436 15 8 1.7656 2.9119 3.5024 16 8 2.9477 0.8663 2.7686 17 6 3.9571 3.2171 2.0114 18 6 4.9412 3.3699 3.1729 19 8 6.0532 4.1635 2.7538 20 6 7.0372 4.3677 3.7697 21 6 8.1582 5.2123 3.2208 22 6 9.2469 4.6095 2.6191 23 6 10.2728 5.3844 2.1112 24 6 10.2150 6.7616 2.2145 25 6 9.1287 7.3641 2.8210 26 6 8.1005 6.5895 3.3245 27 1 -0.3633 -1.0236 0.0917 28 1 -0.3634 0.5911 0.8406 29 1 -0.3633 0.4323 -0.9323 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.2826 0.4722 -1.8264 33 1 0.6886 2.5303 1.2242 34 1 4.4559 2.7295 1.1738 35 1 3.6054 4.2013 1.7018 36 1 4.4420 3.8578 4.0101 37 1 5.2928 2.3859 3.4829 38 1 6.5818 4.8757 4.6197 39 1 7.4327 3.4043 4.0915 40 1 9.2944 3.5332 2.5427 41 1 11.1217 4.9136 1.6378 42 1 11.0186 7.3669 1.8218 43 1 9.0837 8.4402 2.9020 44 1 7.2520 7.0602 3.7987 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295234053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:18 Heat of formation + Delta-G solvation = -106.019568 kcal Electronic energy + Delta-G solvation = -25443.359755 eV Core-core repulsion = 21680.538876 eV Total energy + Delta-G solvation = -3762.820879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.60674 -37.90785 -36.85577 -36.26641 -35.56861 -32.84967 -32.30676 -31.13323 -31.00773 -30.46458 -26.21393 -25.91994 -23.78729 -23.41188 -22.81862 -21.56420 -20.19643 -18.73215 -17.76930 -17.38655 -17.10980 -16.51426 -16.50232 -15.78735 -15.45871 -15.39134 -14.93917 -14.30212 -14.07766 -13.76312 -13.66031 -13.47415 -13.28003 -13.07189 -12.99203 -12.80605 -12.65954 -11.81457 -11.73876 -11.72226 -11.64817 -11.43962 -11.26823 -11.24706 -11.14498 -10.87478 -10.69782 -10.49215 -10.28787 -10.19021 -9.92658 -9.85304 -9.14573 -9.09655 -9.02012 -8.48168 -8.28745 -6.48664 -4.23807 0.60907 1.03650 1.17750 3.16169 3.36390 3.38608 3.40143 3.55462 3.82244 4.19002 4.43141 4.50931 4.54117 4.56902 4.74482 4.79501 4.88508 4.90568 5.01933 5.04708 5.11987 5.22373 5.29547 5.40710 5.54376 5.72336 5.80388 5.85159 6.00214 6.19209 6.20455 6.26762 6.32999 6.35602 6.43752 6.74214 6.82593 6.93819 6.99693 7.18736 7.29389 7.38333 7.64796 8.05265 8.31670 8.67988 9.45190 10.87142 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.003049 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.124296 B = 9182.054936 C =10710.937464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.139 4.139 3 C 0.266 3.734 4 H 0.030 0.970 5 C -0.602 4.602 6 H 0.059 0.941 7 C 0.027 3.973 8 N -0.904 5.904 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.285 1.285 13 N -1.092 6.092 14 S 2.616 3.384 15 O -0.976 6.976 16 O -0.957 6.957 17 C -0.638 4.638 18 C 0.078 3.922 19 O -0.369 6.369 20 C 0.096 3.904 21 C -0.090 4.090 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.099 4.099 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.272 0.728 33 H 0.412 0.588 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 8.818 11.386 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.179 4.179 3 C 0.161 3.839 4 H 0.048 0.952 5 C -0.642 4.642 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.540 5.540 9 Si 0.897 3.103 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.853 5.853 14 S 2.705 3.295 15 O -0.966 6.966 16 O -0.947 6.947 17 C -0.764 4.764 18 C 0.000 4.000 19 O -0.288 6.288 20 C 0.020 3.980 21 C -0.090 4.090 22 C -0.116 4.116 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.117 4.117 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.619 8.363 10.376 17.040 hybrid contribution 0.018 0.587 1.217 1.351 sum 10.637 8.950 11.593 18.101 Atomic orbital electron populations 1.21495 0.96732 0.98538 1.01632 1.22017 0.96325 0.98856 1.00658 1.18653 0.93709 0.89243 0.82337 0.95250 1.22049 1.31590 1.19144 0.91404 0.92251 1.25738 0.95618 0.95570 1.00933 1.70779 1.22885 1.26047 1.34257 0.83540 0.75981 0.75463 0.75329 1.21295 1.21448 1.21043 1.55377 1.28310 1.70611 1.30965 1.04637 0.75700 0.75311 0.73808 1.93546 1.66989 1.76193 1.59877 1.93590 1.84012 1.32609 1.84499 1.30893 1.18030 1.18096 1.09412 1.22036 0.87444 0.95804 0.94732 1.88065 1.31495 1.72033 1.37255 1.21392 0.87900 0.98289 0.90461 1.19600 0.95033 0.93883 1.00495 1.21120 0.93497 1.00235 0.96724 1.21169 0.98940 0.94019 1.00021 1.21211 0.98281 0.94958 0.98907 1.21154 0.94271 0.99915 0.98916 1.21090 0.98433 0.93033 0.99129 0.95351 0.94286 0.91902 0.90998 0.93921 0.91620 0.75375 0.83951 0.84219 0.91943 0.91793 0.92095 0.92030 0.85757 0.85811 0.85994 0.85877 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.47 37.16 0.35 -2.25 16 2 C -0.14 -3.13 5.59 -26.73 -0.15 -3.28 16 3 C 0.27 6.02 1.99 -69.08 -0.14 5.88 16 4 H 0.03 0.69 6.52 -51.93 -0.34 0.36 16 5 C -0.60 -15.00 7.48 -34.44 -0.26 -15.26 16 6 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 7 C 0.03 0.71 5.26 -17.82 -0.09 0.62 16 8 N -0.90 -25.04 12.90 55.43 0.71 -24.32 16 9 Si 1.07 23.57 29.91 -169.99 -5.08 18.48 16 10 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -1.09 -20.96 4.68 -5.88 -0.03 -20.99 16 14 S 2.62 45.38 5.38 -107.50 -0.58 44.80 16 15 O -0.98 -18.20 18.08 -57.54 -1.04 -19.24 16 16 O -0.96 -19.11 17.14 -57.54 -0.99 -20.09 16 17 C -0.64 -9.72 6.33 37.16 0.24 -9.48 16 18 C 0.08 1.06 5.95 37.16 0.22 1.28 16 19 O -0.37 -5.28 10.33 -35.23 -0.36 -5.65 16 20 C 0.10 1.06 6.06 36.01 0.22 1.28 16 21 C -0.09 -1.01 5.51 -104.62 -0.58 -1.59 16 22 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 23 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 24 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 25 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 26 C -0.10 -1.02 9.70 -39.59 -0.38 -1.40 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.74 7.23 -51.93 -0.38 0.36 16 29 H 0.06 1.36 7.38 -51.93 -0.38 0.97 16 30 H 0.07 1.75 6.27 -51.93 -0.33 1.43 16 31 H 0.04 0.94 7.46 -51.93 -0.39 0.55 16 32 H 0.27 7.47 6.03 -40.82 -0.25 7.23 16 33 H 0.41 7.40 8.43 -34.47 -0.29 7.11 16 34 H 0.14 2.28 7.44 -51.92 -0.39 1.89 16 35 H 0.14 2.00 8.14 -51.92 -0.42 1.58 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 44 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -32.18 376.52 -10.43 -42.60 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.58 Total: 8.91 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -2.15 Total: -30.18 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.69 Total: -45.32 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -2.39 Total: -44.98 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.08 Total: 18.48 kcal Atomic # 16 Polarization: 45.38 SS G_CDS: -0.58 Total: 44.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.18 -10.43 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295234053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.415 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds