Wall clock time and date at job start Tue Mar 31 2020 15:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 H 1.09002 * 109.47287 * 180.95262 * 3 2 1 5 5 C 1.50699 * 109.46860 * 300.94856 * 3 2 1 6 6 H 1.07999 * 119.99862 * 114.80594 * 5 3 2 7 7 C 1.37876 * 120.00149 * 294.80573 * 5 3 2 8 8 N 1.31512 * 120.00204 * 354.17008 * 7 5 3 9 9 Si 1.86799 * 120.00088 * 174.17248 * 7 5 3 10 10 H 1.48506 * 109.47130 * 269.99943 * 9 7 5 11 11 H 1.48496 * 109.47246 * 29.99572 * 9 7 5 12 12 H 1.48502 * 109.47258 * 150.00262 * 9 7 5 13 13 N 1.46499 * 109.47281 * 60.95025 * 3 2 1 14 14 S 1.65596 * 120.00211 * 95.43105 * 13 3 2 15 15 O 1.42101 * 104.27659 * 180.88662 * 14 13 3 16 16 O 1.42101 * 104.27632 * 308.73913 * 14 13 3 17 17 C 1.81397 * 104.45074 * 64.81018 * 14 13 3 18 18 C 1.52997 * 109.47167 * 179.97438 * 17 14 13 19 19 O 1.42897 * 109.47054 * 180.02562 * 18 17 14 20 20 C 1.42903 * 113.99930 * 180.02562 * 19 18 17 21 21 C 1.50706 * 109.47162 * 179.97438 * 20 19 18 22 22 C 1.38232 * 119.99977 * 269.72694 * 21 20 19 23 23 C 1.38235 * 119.99983 * 179.76482 * 22 21 20 24 24 C 1.38229 * 119.99955 * 0.50816 * 23 22 21 25 25 C 1.38234 * 119.99699 * 359.74522 * 24 23 22 26 26 C 1.38228 * 120.00303 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.46931 * 185.12189 * 1 2 3 28 28 H 1.08999 * 109.47267 * 305.11599 * 1 2 3 29 29 H 1.08995 * 109.47064 * 65.12278 * 1 2 3 30 30 H 1.08996 * 109.47595 * 239.99499 * 2 1 3 31 31 H 1.09007 * 109.47337 * 119.99775 * 2 1 3 32 32 H 0.97004 * 120.00051 * 355.78610 * 8 7 5 33 33 H 0.97008 * 119.99550 * 275.43143 * 13 3 2 34 34 H 1.08999 * 109.47095 * 300.00433 * 17 14 13 35 35 H 1.09005 * 109.46494 * 59.99947 * 17 14 13 36 36 H 1.09001 * 109.46737 * 300.00222 * 18 17 14 37 37 H 1.08993 * 109.47235 * 59.99855 * 18 17 14 38 38 H 1.08993 * 109.47131 * 299.99498 * 20 19 18 39 39 H 1.09000 * 109.47527 * 59.99705 * 20 19 18 40 40 H 1.08002 * 120.00031 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.99782 * 180.22975 * 23 22 21 42 42 H 1.08003 * 120.00282 * 179.72395 * 24 23 22 43 43 H 1.08008 * 119.99534 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.00251 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0171 5 6 1.5185 2.1596 -1.2185 6 1 0.8319 2.9857 -1.1064 7 6 1.9180 1.7611 -2.4766 8 7 2.8399 0.8329 -2.6106 9 14 1.1496 2.5397 -3.9908 10 1 -0.0476 1.7596 -4.3951 11 1 0.7492 3.9356 -3.6805 12 1 2.1363 2.5428 -5.1006 13 7 1.5705 2.1265 1.2074 14 16 2.5451 2.2104 2.5436 15 8 1.7656 2.9119 3.5024 16 8 2.9477 0.8663 2.7686 17 6 3.9571 3.2171 2.0114 18 6 4.9412 3.3699 3.1729 19 8 6.0532 4.1635 2.7538 20 6 7.0372 4.3677 3.7697 21 6 8.1582 5.2123 3.2208 22 6 9.2469 4.6095 2.6191 23 6 10.2728 5.3844 2.1112 24 6 10.2150 6.7616 2.2145 25 6 9.1287 7.3641 2.8210 26 6 8.1005 6.5895 3.3245 27 1 -0.3633 -1.0236 0.0917 28 1 -0.3634 0.5911 0.8406 29 1 -0.3633 0.4323 -0.9323 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.2826 0.4722 -1.8264 33 1 0.6886 2.5303 1.2242 34 1 4.4559 2.7295 1.1738 35 1 3.6054 4.2013 1.7018 36 1 4.4420 3.8578 4.0101 37 1 5.2928 2.3859 3.4829 38 1 6.5818 4.8757 4.6197 39 1 7.4327 3.4043 4.0915 40 1 9.2944 3.5332 2.5427 41 1 11.1217 4.9136 1.6378 42 1 11.0186 7.3669 1.8218 43 1 9.0837 8.4402 2.9020 44 1 7.2520 7.0602 3.7987 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295234053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:17 Heat of formation + Delta-G solvation = -126.965317 kcal Electronic energy + Delta-G solvation = -25444.268030 eV Core-core repulsion = 21680.538876 eV Total energy + Delta-G solvation = -3763.729155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36598 -38.85316 -38.45621 -37.93885 -37.08398 -34.17183 -33.77557 -32.20663 -31.97123 -31.83943 -27.77973 -27.03086 -25.63900 -24.54771 -23.53126 -22.31030 -21.97562 -20.21087 -19.45402 -18.77755 -18.09989 -17.63323 -17.55945 -16.92877 -16.79600 -16.33455 -16.00361 -15.71753 -15.46334 -15.23433 -15.13296 -14.83669 -14.53840 -14.40156 -14.23410 -13.78855 -13.60922 -13.29944 -13.26285 -13.17081 -12.88717 -12.76731 -12.67446 -12.61951 -12.29083 -12.14226 -12.06495 -11.95510 -11.91382 -11.83135 -11.70677 -10.82884 -10.80142 -10.44516 -10.04714 -9.87176 -9.81717 -8.53029 -6.27761 -0.79992 0.28259 0.45153 1.60262 1.66056 1.75977 1.83106 2.38638 2.61656 2.76214 3.10642 3.18199 3.24417 3.46498 3.69385 3.85965 3.89275 4.04201 4.10397 4.22617 4.25027 4.27571 4.34491 4.40026 4.45379 4.58888 4.60574 4.65369 4.71711 4.72303 5.02436 5.09197 5.10797 5.26365 5.37423 5.49875 5.54233 5.56357 5.59809 5.60871 5.91477 5.97450 6.05954 6.23695 6.40982 6.64357 7.48019 8.83359 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.003049 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.124296 B = 9182.054936 C =10710.937464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 C 0.268 3.732 4 H 0.018 0.982 5 C -0.600 4.600 6 H 0.062 0.938 7 C -0.018 4.018 8 N -0.932 5.932 9 Si 1.109 2.891 10 H -0.277 1.277 11 H -0.271 1.271 12 H -0.291 1.291 13 N -1.095 6.095 14 S 2.636 3.364 15 O -0.984 6.984 16 O -0.985 6.985 17 C -0.625 4.625 18 C 0.069 3.931 19 O -0.392 6.392 20 C 0.090 3.910 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.113 4.113 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.417 0.583 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 10.347 11.920 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.179 4.179 3 C 0.161 3.839 4 H 0.036 0.964 5 C -0.640 4.640 6 H 0.080 0.920 7 C -0.219 4.219 8 N -0.570 5.570 9 Si 0.932 3.068 10 H -0.203 1.203 11 H -0.196 1.196 12 H -0.217 1.217 13 N -0.855 5.855 14 S 2.728 3.272 15 O -0.975 6.975 16 O -0.975 6.975 17 C -0.754 4.754 18 C -0.009 4.009 19 O -0.312 6.312 20 C 0.014 3.986 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.149 4.149 26 C -0.131 4.131 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.617 9.885 10.942 18.170 hybrid contribution 0.092 0.170 1.129 1.145 sum 10.709 10.055 12.070 19.013 Atomic orbital electron populations 1.21451 0.95086 0.99974 1.01487 1.21978 0.97829 0.98564 0.99504 1.18424 0.93035 0.89437 0.82969 0.96409 1.22309 1.30748 1.18792 0.92121 0.92021 1.26887 0.95550 0.95526 1.03890 1.70876 1.24490 1.27761 1.33842 0.83011 0.75424 0.75783 0.72545 1.20327 1.19611 1.21728 1.55247 1.29305 1.70763 1.30163 1.03958 0.75606 0.74698 0.72904 1.93533 1.67807 1.76201 1.59932 1.93553 1.84375 1.34760 1.84786 1.30683 1.17133 1.17750 1.09875 1.22183 0.87453 0.96944 0.94305 1.88015 1.32101 1.72152 1.38936 1.21614 0.87437 0.99266 0.90290 1.19785 0.95399 0.94522 1.01497 1.21337 0.94052 1.00766 0.97318 1.21478 0.99217 0.94538 0.99821 1.21578 0.98838 0.95057 0.98301 1.21495 0.93944 1.01118 0.98311 1.21340 0.99289 0.92957 0.99526 0.93494 0.92890 0.93193 0.93319 0.93854 0.92702 0.74736 0.84866 0.83110 0.89757 0.90662 0.90298 0.90881 0.85446 0.84031 0.83574 0.83694 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.47 71.98 0.68 -4.25 16 2 C -0.14 -6.30 5.59 30.59 0.17 -6.13 16 3 C 0.27 12.14 1.99 44.25 0.09 12.22 16 4 H 0.02 0.87 6.52 -2.39 -0.02 0.85 16 5 C -0.60 -29.67 7.48 25.60 0.19 -29.48 16 6 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 7 C -0.02 -0.95 5.26 84.65 0.45 -0.51 16 8 N -0.93 -52.41 12.90 21.45 0.28 -52.13 16 9 Si 1.11 46.92 29.91 68.60 2.05 48.98 16 10 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 13 N -1.10 -41.26 4.68 -172.52 -0.81 -42.06 16 14 S 2.64 89.13 5.38 -56.49 -0.30 88.83 16 15 O -0.98 -35.20 18.08 -127.65 -2.31 -37.51 16 16 O -0.98 -38.92 17.14 -127.65 -2.19 -41.11 16 17 C -0.63 -18.46 6.33 71.98 0.46 -18.00 16 18 C 0.07 1.78 5.95 71.98 0.43 2.20 16 19 O -0.39 -10.82 10.33 -148.98 -1.54 -12.36 16 20 C 0.09 1.89 6.06 71.24 0.43 2.32 16 21 C -0.11 -2.45 5.51 -19.87 -0.11 -2.56 16 22 C -0.12 -2.43 9.70 22.27 0.22 -2.21 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 24 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.11 -2.21 9.70 22.27 0.22 -2.00 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.94 7.23 -2.39 -0.02 1.93 16 29 H 0.05 2.11 7.38 -2.39 -0.02 2.09 16 30 H 0.05 2.42 6.27 -2.39 -0.01 2.41 16 31 H 0.04 1.92 7.46 -2.38 -0.02 1.90 16 32 H 0.26 14.82 6.03 -92.70 -0.56 14.26 16 33 H 0.42 14.52 8.43 -96.74 -0.82 13.71 16 34 H 0.13 4.26 7.44 -2.39 -0.02 4.25 16 35 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 39 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 40 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -67.57 376.52 -0.54 -68.11 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.39 Total: 33.45 kcal Atomic # 6 Polarization: -58.07 SS G_CDS: 3.89 Total: -54.18 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -0.53 Total: -94.20 kcal Atomic # 8 Polarization: -84.95 SS G_CDS: -6.03 Total: -90.98 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.05 Total: 48.98 kcal Atomic # 16 Polarization: 89.13 SS G_CDS: -0.30 Total: 88.83 kcal Total: -67.57 -0.54 -68.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295234053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.854 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds