Wall clock time and date at job start Tue Mar 31 2020 15:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46660 * 2 1 4 4 H 1.08990 * 109.47354 * 302.60420 * 3 2 1 5 5 C 1.50701 * 109.46801 * 182.60695 * 3 2 1 6 6 H 1.08001 * 120.00264 * 245.43924 * 5 3 2 7 7 C 1.37881 * 119.99864 * 65.44133 * 5 3 2 8 8 N 1.31519 * 120.00018 * 190.79437 * 7 5 3 9 9 Si 1.86799 * 120.00034 * 10.79144 * 7 5 3 10 10 H 1.48496 * 109.47174 * 88.94648 * 9 7 5 11 11 H 1.48504 * 109.47100 * 208.94782 * 9 7 5 12 12 H 1.48496 * 109.46938 * 328.94593 * 9 7 5 13 13 N 1.46493 * 109.47336 * 62.61189 * 3 2 1 14 14 S 1.65603 * 120.00140 * 215.27547 * 13 3 2 15 15 O 1.42103 * 104.27700 * 180.92103 * 14 13 3 16 16 O 1.42094 * 104.27630 * 308.78059 * 14 13 3 17 17 C 1.81397 * 104.44880 * 64.85168 * 14 13 3 18 18 C 1.53002 * 109.47384 * 184.46308 * 17 14 13 19 19 O 1.42894 * 109.47340 * 179.97438 * 18 17 14 20 20 C 1.42900 * 114.00190 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47478 * 180.02562 * 20 19 18 22 22 C 1.38239 * 120.00086 * 269.72764 * 21 20 19 23 23 C 1.38232 * 119.99982 * 179.76248 * 22 21 20 24 24 C 1.38239 * 120.00051 * 0.51306 * 23 22 21 25 25 C 1.38237 * 119.99629 * 359.74077 * 24 23 22 26 26 C 1.38231 * 120.00055 * 90.00026 * 21 20 19 27 27 H 1.09006 * 109.46986 * 184.44126 * 1 2 3 28 28 H 1.08997 * 109.47684 * 304.44423 * 1 2 3 29 29 H 1.08999 * 109.47234 * 64.44827 * 1 2 3 30 30 H 1.08999 * 109.46942 * 239.99984 * 2 1 3 31 31 H 1.09003 * 109.46653 * 119.99743 * 2 1 3 32 32 H 0.96997 * 120.00255 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00102 * 35.27107 * 13 3 2 34 34 H 1.09001 * 109.47419 * 304.46280 * 17 14 13 35 35 H 1.09002 * 109.47335 * 64.45848 * 17 14 13 36 36 H 1.09001 * 109.46819 * 300.00339 * 18 17 14 37 37 H 1.09006 * 109.46787 * 59.99532 * 18 17 14 38 38 H 1.09000 * 109.47209 * 300.00244 * 20 19 18 39 39 H 1.09001 * 109.46849 * 60.00258 * 20 19 18 40 40 H 1.07997 * 119.99507 * 359.97438 * 22 21 20 41 41 H 1.07994 * 120.00184 * 180.23129 * 23 22 21 42 42 H 1.07997 * 120.00287 * 179.72137 * 24 23 22 43 43 H 1.08001 * 119.99544 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00072 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6389 1.9696 -0.8656 5 6 3.5455 1.4431 -0.0646 6 1 4.1217 1.8191 0.7679 7 6 4.1875 0.9635 -1.1867 8 7 5.4874 0.7646 -1.1659 9 14 3.2111 0.5963 -2.7362 10 1 3.1385 1.8183 -3.5768 11 1 3.8802 -0.4891 -3.4974 12 1 1.8383 0.1677 -2.3662 13 7 1.6036 2.1147 1.2263 14 16 1.2008 3.7206 1.1919 15 8 0.8564 4.0244 2.5367 16 8 2.3091 4.3464 0.5602 17 6 -0.2654 3.7968 0.1267 18 6 -0.6735 5.2574 -0.0758 19 8 -1.8282 5.3174 -0.9154 20 6 -2.2946 6.6442 -1.1685 21 6 -3.5092 6.5886 -2.0588 22 6 -3.3618 6.6324 -3.4326 23 6 -4.4756 6.5764 -4.2493 24 6 -5.7376 6.4874 -3.6921 25 6 -5.8852 6.4489 -2.3182 26 6 -4.7710 6.4995 -1.5016 27 1 -0.3633 -1.0246 0.0796 28 1 -0.3634 0.5812 0.8474 29 1 -0.3633 0.4432 -0.9271 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 5.9390 0.4269 -1.9551 33 1 1.5506 1.6191 2.0585 34 1 -0.0367 3.3463 -0.8392 35 1 -1.0846 3.2524 0.5965 36 1 -0.9023 5.7079 0.8901 37 1 0.1457 5.8017 -0.5456 38 1 -2.5576 7.1230 -0.2252 39 1 -1.5090 7.2178 -1.6605 40 1 -2.3762 6.7068 -3.8677 41 1 -4.3602 6.6068 -5.3226 42 1 -6.6081 6.4482 -4.3301 43 1 -6.8712 6.3798 -1.8828 44 1 -4.8865 6.4702 -0.4281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295234057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:22 Heat of formation + Delta-G solvation = -91.589289 kcal Electronic energy + Delta-G solvation = -25613.707634 eV Core-core repulsion = 21851.512499 eV Total energy + Delta-G solvation = -3762.195135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.65580 -37.94382 -36.71510 -36.24513 -35.42361 -32.89054 -32.19960 -31.18703 -31.10157 -30.97666 -27.24173 -26.25375 -23.47768 -22.87046 -22.76840 -21.61226 -20.55096 -18.84928 -17.68300 -17.26799 -16.95079 -16.57275 -16.37884 -15.83322 -15.69475 -15.40023 -15.10277 -14.70520 -14.34643 -14.04414 -13.71554 -13.57472 -13.32502 -13.05964 -12.85934 -12.78022 -12.29507 -12.08135 -11.79927 -11.76759 -11.64244 -11.60255 -11.45662 -11.29548 -11.29308 -10.98727 -10.87320 -10.77792 -10.50897 -10.10634 -9.87861 -9.77824 -9.33569 -9.20158 -9.13090 -8.58980 -8.33373 -6.11953 -4.09430 0.63491 0.98615 1.12180 3.15240 3.22168 3.27559 3.34346 3.38990 3.80699 4.22919 4.35207 4.46837 4.51754 4.55185 4.69822 4.75361 4.85962 4.92509 5.00320 5.05821 5.09720 5.13730 5.24799 5.35914 5.52305 5.67220 5.70494 5.75223 5.76443 5.78958 5.91501 6.12110 6.15129 6.21331 6.30727 6.40864 6.47961 6.63375 6.68825 6.89481 6.98667 7.17651 7.55758 7.79297 8.47470 8.99608 9.48988 11.01538 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.003134 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.187511 B = 8931.248115 C = 9794.001357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.254 3.746 4 H 0.030 0.970 5 C -0.524 4.524 6 H 0.083 0.917 7 C 0.077 3.923 8 N -0.889 5.889 9 Si 0.849 3.151 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.245 1.245 13 N -1.092 6.092 14 S 2.615 3.385 15 O -0.975 6.975 16 O -0.931 6.931 17 C -0.647 4.647 18 C 0.078 3.922 19 O -0.372 6.372 20 C 0.096 3.904 21 C -0.089 4.089 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.099 4.099 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.410 0.590 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.416 9.580 -2.349 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.149 3.851 4 H 0.048 0.952 5 C -0.563 4.563 6 H 0.101 0.899 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.675 3.325 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.169 1.169 13 N -0.852 5.852 14 S 2.703 3.297 15 O -0.965 6.965 16 O -0.921 6.921 17 C -0.772 4.772 18 C 0.000 4.000 19 O -0.291 6.291 20 C 0.019 3.981 21 C -0.089 4.089 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.117 4.117 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.895 10.157 -2.288 23.345 hybrid contribution -0.805 -0.687 -1.031 1.478 sum -21.700 9.470 -3.319 23.908 Atomic orbital electron populations 1.21904 0.98048 1.00563 1.00875 1.22361 0.93213 0.99309 1.02890 1.18815 0.95946 0.89501 0.80871 0.95244 1.21282 0.88707 1.42014 1.04271 0.89889 1.24885 0.94747 0.94632 0.98329 1.69916 1.08678 1.44609 1.29460 0.87521 0.81855 0.78701 0.84400 1.20150 1.21022 1.16913 1.55276 1.81723 1.29868 1.18381 1.04809 0.75967 0.74292 0.74632 1.93551 1.85758 1.83798 1.33433 1.93666 1.45615 1.74876 1.77952 1.31016 1.23320 1.03590 1.19253 1.22027 0.89280 0.93721 0.95007 1.88024 1.45280 1.26392 1.69402 1.21395 0.93857 0.85048 0.97769 1.19612 0.93916 1.01542 0.93880 1.21135 0.99161 0.98441 0.92870 1.21173 0.92578 1.00482 0.99939 1.21213 0.97432 0.99553 0.95198 1.21154 0.98645 1.00690 0.93792 1.21094 0.91937 0.98605 1.00077 0.93682 0.93164 0.93585 0.90819 0.91665 0.92527 0.75572 0.84214 0.84579 0.91951 0.91362 0.92051 0.91905 0.85719 0.85832 0.86016 0.85893 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.84 37.16 0.37 -2.03 16 2 C -0.14 -2.63 4.86 -26.73 -0.13 -2.76 16 3 C 0.25 5.44 1.65 -69.09 -0.11 5.33 16 4 H 0.03 0.62 5.87 -51.93 -0.30 0.32 16 5 C -0.52 -14.17 9.28 -34.44 -0.32 -14.49 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.08 2.15 5.39 -17.82 -0.10 2.06 16 8 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 9 Si 0.85 19.86 25.85 -169.99 -4.39 15.47 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.24 -5.09 5.14 56.52 0.29 -4.80 16 13 N -1.09 -20.02 4.61 -5.89 -0.03 -20.05 16 14 S 2.62 45.64 5.38 -107.50 -0.58 45.06 16 15 O -0.98 -18.09 18.08 -57.54 -1.04 -19.13 16 16 O -0.93 -20.35 17.80 -57.54 -1.02 -21.38 16 17 C -0.65 -8.95 6.36 37.16 0.24 -8.71 16 18 C 0.08 1.00 5.95 37.16 0.22 1.22 16 19 O -0.37 -4.93 10.33 -35.23 -0.36 -5.29 16 20 C 0.10 1.00 6.06 36.00 0.22 1.22 16 21 C -0.09 -0.94 5.51 -104.63 -0.58 -1.52 16 22 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.10 -0.94 9.70 -39.59 -0.38 -1.33 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.49 4.44 -51.93 -0.23 1.26 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.41 6.65 8.80 -34.47 -0.30 6.34 16 34 H 0.14 1.95 7.32 -51.92 -0.38 1.57 16 35 H 0.14 1.61 8.14 -51.92 -0.42 1.18 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 39 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -34.85 375.47 -9.92 -44.77 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.77 Total: 7.42 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -2.16 Total: -26.64 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.75 Total: -45.93 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.43 Total: -45.80 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.39 Total: 15.47 kcal Atomic # 16 Polarization: 45.64 SS G_CDS: -0.58 Total: 45.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.85 -9.92 -44.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295234057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.821 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds