Wall clock time and date at job start Tue Mar 31 2020 15:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46660 * 2 1 4 4 H 1.08990 * 109.47354 * 302.60420 * 3 2 1 5 5 C 1.50701 * 109.46801 * 182.60695 * 3 2 1 6 6 H 1.08001 * 120.00264 * 245.43924 * 5 3 2 7 7 C 1.37881 * 119.99864 * 65.44133 * 5 3 2 8 8 N 1.31519 * 120.00018 * 190.79437 * 7 5 3 9 9 Si 1.86799 * 120.00034 * 10.79144 * 7 5 3 10 10 H 1.48496 * 109.47174 * 88.94648 * 9 7 5 11 11 H 1.48504 * 109.47100 * 208.94782 * 9 7 5 12 12 H 1.48496 * 109.46938 * 328.94593 * 9 7 5 13 13 N 1.46493 * 109.47336 * 62.61189 * 3 2 1 14 14 S 1.65603 * 120.00140 * 215.27547 * 13 3 2 15 15 O 1.42103 * 104.27700 * 180.92103 * 14 13 3 16 16 O 1.42094 * 104.27630 * 308.78059 * 14 13 3 17 17 C 1.81397 * 104.44880 * 64.85168 * 14 13 3 18 18 C 1.53002 * 109.47384 * 184.46308 * 17 14 13 19 19 O 1.42894 * 109.47340 * 179.97438 * 18 17 14 20 20 C 1.42900 * 114.00190 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47478 * 180.02562 * 20 19 18 22 22 C 1.38239 * 120.00086 * 269.72764 * 21 20 19 23 23 C 1.38232 * 119.99982 * 179.76248 * 22 21 20 24 24 C 1.38239 * 120.00051 * 0.51306 * 23 22 21 25 25 C 1.38237 * 119.99629 * 359.74077 * 24 23 22 26 26 C 1.38231 * 120.00055 * 90.00026 * 21 20 19 27 27 H 1.09006 * 109.46986 * 184.44126 * 1 2 3 28 28 H 1.08997 * 109.47684 * 304.44423 * 1 2 3 29 29 H 1.08999 * 109.47234 * 64.44827 * 1 2 3 30 30 H 1.08999 * 109.46942 * 239.99984 * 2 1 3 31 31 H 1.09003 * 109.46653 * 119.99743 * 2 1 3 32 32 H 0.96997 * 120.00255 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00102 * 35.27107 * 13 3 2 34 34 H 1.09001 * 109.47419 * 304.46280 * 17 14 13 35 35 H 1.09002 * 109.47335 * 64.45848 * 17 14 13 36 36 H 1.09001 * 109.46819 * 300.00339 * 18 17 14 37 37 H 1.09006 * 109.46787 * 59.99532 * 18 17 14 38 38 H 1.09000 * 109.47209 * 300.00244 * 20 19 18 39 39 H 1.09001 * 109.46849 * 60.00258 * 20 19 18 40 40 H 1.07997 * 119.99507 * 359.97438 * 22 21 20 41 41 H 1.07994 * 120.00184 * 180.23129 * 23 22 21 42 42 H 1.07997 * 120.00287 * 179.72137 * 24 23 22 43 43 H 1.08001 * 119.99544 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00072 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6389 1.9696 -0.8656 5 6 3.5455 1.4431 -0.0646 6 1 4.1217 1.8191 0.7679 7 6 4.1875 0.9635 -1.1867 8 7 5.4874 0.7646 -1.1659 9 14 3.2111 0.5963 -2.7362 10 1 3.1385 1.8183 -3.5768 11 1 3.8802 -0.4891 -3.4974 12 1 1.8383 0.1677 -2.3662 13 7 1.6036 2.1147 1.2263 14 16 1.2008 3.7206 1.1919 15 8 0.8564 4.0244 2.5367 16 8 2.3091 4.3464 0.5602 17 6 -0.2654 3.7968 0.1267 18 6 -0.6735 5.2574 -0.0758 19 8 -1.8282 5.3174 -0.9154 20 6 -2.2946 6.6442 -1.1685 21 6 -3.5092 6.5886 -2.0588 22 6 -3.3618 6.6324 -3.4326 23 6 -4.4756 6.5764 -4.2493 24 6 -5.7376 6.4874 -3.6921 25 6 -5.8852 6.4489 -2.3182 26 6 -4.7710 6.4995 -1.5016 27 1 -0.3633 -1.0246 0.0796 28 1 -0.3634 0.5812 0.8474 29 1 -0.3633 0.4432 -0.9271 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 5.9390 0.4269 -1.9551 33 1 1.5506 1.6191 2.0585 34 1 -0.0367 3.3463 -0.8392 35 1 -1.0846 3.2524 0.5965 36 1 -0.9023 5.7079 0.8901 37 1 0.1457 5.8017 -0.5456 38 1 -2.5576 7.1230 -0.2252 39 1 -1.5090 7.2178 -1.6605 40 1 -2.3762 6.7068 -3.8677 41 1 -4.3602 6.6068 -5.3226 42 1 -6.6081 6.4482 -4.3301 43 1 -6.8712 6.3798 -1.8828 44 1 -4.8865 6.4702 -0.4281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295234057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:21 Heat of formation + Delta-G solvation = -117.535052 kcal Electronic energy + Delta-G solvation = -25614.832726 eV Core-core repulsion = 21851.512499 eV Total energy + Delta-G solvation = -3763.320228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33328 -38.80378 -38.26029 -37.81906 -36.95693 -34.25757 -33.73135 -32.44795 -31.93275 -31.81096 -29.04536 -26.99727 -24.59997 -24.40940 -23.50062 -22.27952 -22.12008 -20.28856 -19.15966 -18.71863 -17.98752 -17.64601 -17.47845 -17.18184 -16.87154 -16.41627 -16.28327 -15.93198 -15.53378 -15.21460 -15.05084 -14.54275 -14.41987 -14.21003 -14.00529 -13.75150 -13.62155 -13.56926 -13.17275 -13.13536 -13.02365 -12.70599 -12.68087 -12.59678 -12.57954 -12.27044 -12.09310 -11.92552 -11.82089 -11.65497 -11.55560 -11.05425 -10.75890 -10.59663 -10.04626 -9.84423 -9.78827 -8.25282 -6.27571 -0.74304 0.31211 0.47931 1.37090 1.41609 1.47724 1.85002 2.37826 2.46014 2.84855 3.08258 3.13505 3.32727 3.52019 3.78438 3.89351 3.93785 4.12340 4.13798 4.27711 4.28376 4.30995 4.37707 4.40869 4.45627 4.53485 4.61892 4.68255 4.69932 4.74677 5.01270 5.05309 5.13771 5.18972 5.29123 5.48552 5.52825 5.59275 5.59576 5.64083 5.69983 5.99738 6.08504 6.27808 6.45040 6.77449 7.35180 8.92608 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.003134 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.187511 B = 8931.248115 C = 9794.001357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.256 3.744 4 H 0.044 0.956 5 C -0.530 4.530 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.195 1.195 13 N -1.095 6.095 14 S 2.621 3.379 15 O -0.989 6.989 16 O -0.987 6.987 17 C -0.621 4.621 18 C 0.066 3.934 19 O -0.386 6.386 20 C 0.089 3.911 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.111 4.111 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.264 0.736 33 H 0.418 0.582 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.820 9.305 -3.419 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.176 4.176 3 C 0.149 3.851 4 H 0.061 0.939 5 C -0.569 4.569 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.588 5.588 9 Si 0.732 3.268 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.117 1.117 13 N -0.854 5.854 14 S 2.715 3.285 15 O -0.979 6.979 16 O -0.977 6.977 17 C -0.751 4.751 18 C -0.012 4.012 19 O -0.306 6.306 20 C 0.013 3.987 21 C -0.110 4.110 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.129 4.129 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.254 0.746 34 H 0.165 0.835 35 H 0.185 0.815 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.290 9.880 -3.295 27.351 hybrid contribution 0.534 -0.493 -0.613 0.950 sum -24.756 9.388 -3.908 26.763 Atomic orbital electron populations 1.21884 0.94352 1.02524 1.02320 1.22227 0.96445 0.96664 1.02307 1.18678 0.92161 0.91820 0.82446 0.93874 1.21646 0.92069 1.40652 1.02534 0.95267 1.25858 0.95739 0.94705 1.02273 1.70099 1.11137 1.46985 1.30582 0.86547 0.82813 0.78343 0.79105 1.20357 1.21202 1.11679 1.55098 1.82362 1.29895 1.18084 1.04326 0.76398 0.73298 0.74502 1.93527 1.86085 1.83679 1.34658 1.93606 1.49565 1.75813 1.78737 1.30658 1.20956 1.05284 1.18209 1.22154 0.89758 0.92938 0.96315 1.87974 1.45015 1.28112 1.69461 1.21593 0.94202 0.84049 0.98815 1.19756 0.94326 1.02701 0.94170 1.21329 0.99840 0.99160 0.93132 1.21462 0.92603 1.00114 1.00868 1.21569 0.98046 0.98567 0.95608 1.21488 0.99400 0.99919 0.94008 1.21334 0.91980 0.98702 1.00931 0.91621 0.91360 0.92524 0.91912 0.91984 0.92668 0.74642 0.83504 0.81490 0.90017 0.91236 0.90406 0.91235 0.85553 0.84173 0.83699 0.83736 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.84 71.98 0.71 -3.24 16 2 C -0.14 -4.85 4.86 30.59 0.15 -4.70 16 3 C 0.26 10.65 1.65 44.25 0.07 10.73 16 4 H 0.04 1.71 5.87 -2.39 -0.01 1.69 16 5 C -0.53 -29.60 9.28 25.60 0.24 -29.36 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.68 5.39 84.66 0.46 1.13 16 8 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 9 Si 0.91 40.57 25.85 68.60 1.77 42.34 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.19 -7.11 5.14 99.48 0.51 -6.60 16 13 N -1.09 -39.20 4.61 -172.55 -0.80 -40.00 16 14 S 2.62 89.24 5.38 -56.49 -0.30 88.93 16 15 O -0.99 -35.75 18.08 -127.65 -2.31 -38.06 16 16 O -0.99 -44.12 17.80 -127.65 -2.27 -46.40 16 17 C -0.62 -15.17 6.36 71.98 0.46 -14.71 16 18 C 0.07 1.54 5.95 71.98 0.43 1.97 16 19 O -0.39 -9.19 10.33 -148.98 -1.54 -10.73 16 20 C 0.09 1.69 6.06 71.23 0.43 2.12 16 21 C -0.11 -2.12 5.51 -19.87 -0.11 -2.23 16 22 C -0.12 -2.16 9.70 22.27 0.22 -1.95 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 24 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 25 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 26 C -0.11 -1.88 9.70 22.27 0.22 -1.67 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 28 H 0.07 1.51 7.55 -2.39 -0.02 1.49 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 2.35 4.44 -2.39 -0.01 2.33 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.42 13.25 8.80 -96.74 -0.85 12.40 16 34 H 0.15 3.53 7.32 -2.39 -0.02 3.51 16 35 H 0.17 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 39 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 40 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -79.52 375.47 -1.26 -80.79 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.05 Total: 29.19 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 3.94 Total: -46.82 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -0.50 Total: -99.24 kcal Atomic # 8 Polarization: -89.07 SS G_CDS: -6.12 Total: -95.19 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.77 Total: 42.34 kcal Atomic # 16 Polarization: 89.24 SS G_CDS: -0.30 Total: 88.93 kcal Total: -79.52 -1.26 -80.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295234057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.750 kcal (2) G-P(sol) polarization free energy of solvation -79.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds