Wall clock time and date at job start Tue Mar 31 2020 15:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46497 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00358 * 275.00162 * 4 3 2 6 6 H 1.07999 * 120.00227 * 144.33303 * 5 4 3 7 7 C 1.38812 * 119.99590 * 324.33334 * 5 4 3 8 8 N 1.31623 * 120.00027 * 337.25321 * 7 5 4 9 9 Si 1.86798 * 120.00195 * 157.26236 * 7 5 4 10 10 H 1.48503 * 109.47127 * 59.99524 * 9 7 5 11 11 H 1.48498 * 109.47372 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46773 * 299.99947 * 9 7 5 13 13 S 1.65605 * 120.00045 * 94.99855 * 4 3 2 14 14 O 1.42103 * 104.27605 * 339.28247 * 13 4 3 15 15 O 1.42098 * 104.27916 * 211.42684 * 13 4 3 16 16 C 1.81400 * 104.44898 * 95.35076 * 13 4 3 17 17 C 1.52999 * 109.47204 * 174.28153 * 16 13 4 18 18 H 1.09001 * 109.47244 * 302.10830 * 17 16 13 19 19 O 1.42901 * 109.46770 * 62.10849 * 17 16 13 20 20 C 1.42904 * 113.99893 * 207.82851 * 19 17 16 21 21 C 1.50698 * 109.47317 * 182.10950 * 17 16 13 22 22 C 1.38246 * 119.99596 * 279.72874 * 21 17 16 23 23 C 1.38237 * 119.99361 * 179.78718 * 22 21 17 24 24 C 1.38229 * 120.00281 * 0.44318 * 23 22 21 25 25 C 1.38235 * 120.00136 * 359.80948 * 24 23 22 26 26 C 1.38231 * 120.00358 * 99.99905 * 21 17 16 27 27 H 1.08998 * 109.47457 * 300.00671 * 1 2 3 28 28 H 1.09009 * 109.46704 * 60.00161 * 1 2 3 29 29 H 1.08993 * 109.47558 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46994 * 239.99933 * 2 1 3 31 31 H 1.08999 * 109.46707 * 120.00023 * 2 1 3 32 32 H 1.09004 * 109.47390 * 59.99798 * 3 2 1 33 33 H 1.08999 * 109.47371 * 299.99616 * 3 2 1 34 34 H 0.96998 * 120.00024 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.46909 * 54.28494 * 16 13 4 36 36 H 1.09000 * 109.47262 * 294.28325 * 16 13 4 37 37 H 1.08999 * 109.47209 * 175.80292 * 20 19 17 38 38 H 1.09004 * 109.46698 * 55.81130 * 20 19 17 39 39 H 1.08991 * 109.47549 * 295.81241 * 20 19 17 40 40 H 1.08000 * 120.00105 * 359.97438 * 22 21 17 41 41 H 1.08007 * 119.99203 * 180.27448 * 23 22 21 42 42 H 1.08001 * 119.99623 * 179.83869 * 24 23 22 43 43 H 1.07992 * 120.00004 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.99857 * 359.97438 * 26 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3392 1.1823 6 1 5.1173 0.7883 1.2226 7 6 3.6900 1.9427 2.3283 8 7 2.8511 2.9521 2.2285 9 14 4.2088 1.3226 4.0123 10 1 5.6818 1.4476 4.1535 11 1 3.5408 2.1299 5.0645 12 1 3.8168 -0.1024 4.1573 13 16 4.3336 1.5672 -1.4278 14 8 3.3937 1.1643 -2.4145 15 8 5.5264 0.8272 -1.2068 16 6 4.7019 3.3365 -1.5844 17 6 5.5959 3.5653 -2.8047 18 1 6.5098 2.9805 -2.7004 19 8 4.9023 3.1586 -3.9861 20 6 5.7605 2.7300 -5.0454 21 6 5.9443 5.0280 -2.9051 22 6 5.0386 5.9183 -3.4514 23 6 5.3565 7.2607 -3.5394 24 6 6.5834 7.7115 -3.0897 25 6 7.4910 6.8204 -2.5483 26 6 7.1715 5.4787 -2.4562 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.5019 3.3735 3.0293 35 1 5.2163 3.6813 -0.6874 36 1 3.7719 3.8919 -1.7060 37 1 5.1572 2.3681 -5.8779 38 1 6.4054 1.9271 -4.6881 39 1 6.3735 3.5676 -5.3779 40 1 4.0817 5.5655 -3.8065 41 1 4.6471 7.9569 -3.9621 42 1 6.8327 8.7599 -3.1609 43 1 8.4494 7.1726 -2.1966 44 1 7.8805 4.7825 -2.0331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295320404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:36 Heat of formation + Delta-G solvation = -93.840347 kcal Electronic energy + Delta-G solvation = -26943.220998 eV Core-core repulsion = 23180.928250 eV Total energy + Delta-G solvation = -3762.292748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.51357 -37.44941 -36.27944 -35.59574 -34.40774 -32.74109 -32.55190 -31.03141 -30.79523 -29.25020 -26.27560 -25.98264 -23.95091 -23.50952 -22.43945 -20.75456 -20.61950 -18.36759 -17.34696 -16.85800 -16.47127 -16.30309 -15.68902 -15.31271 -14.77239 -14.56479 -14.46588 -14.37901 -14.09721 -13.82394 -13.47701 -13.27548 -12.93197 -12.72933 -12.65622 -12.12347 -11.88918 -11.77460 -11.63054 -11.54328 -11.25268 -11.12185 -11.04833 -10.90725 -10.65699 -10.62765 -10.60800 -10.54463 -10.38999 -10.12087 -9.88115 -9.65255 -9.36591 -9.17914 -8.82597 -8.61603 -7.80878 -6.60107 -4.15467 1.39336 1.50140 1.71447 3.10184 3.14224 3.20020 3.81651 3.89582 3.96481 4.33646 4.67356 4.83895 4.96761 5.05782 5.15950 5.22428 5.27182 5.45405 5.51712 5.54848 5.59477 5.62099 5.70940 5.81927 5.84083 5.86969 6.02840 6.06389 6.13296 6.22315 6.32744 6.52032 6.57473 6.58199 6.59771 6.67136 6.67583 6.82607 6.91940 7.08676 7.21208 7.33189 7.34206 7.58211 8.28748 8.68084 9.17801 10.34472 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.004578 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.754011 B = 6114.133019 C = 7137.573854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.125 3.875 4 N -0.806 5.806 5 C -0.249 4.249 6 H 0.108 0.892 7 C 0.037 3.963 8 N -0.825 5.825 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.267 1.267 13 S 2.485 3.515 14 O -0.990 6.990 15 O -0.989 6.989 16 C -0.646 4.646 17 C 0.143 3.857 18 H 0.074 0.926 19 O -0.373 6.373 20 C 0.026 3.974 21 C -0.095 4.095 22 C -0.094 4.094 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.114 4.114 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.276 0.724 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 5.873 -5.931 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.002 4.002 4 N -0.629 5.629 5 C -0.396 4.396 6 H 0.125 0.875 7 C -0.176 4.176 8 N -0.463 5.463 9 Si 0.746 3.254 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.192 1.192 13 S 2.585 3.415 14 O -0.979 6.979 15 O -0.979 6.979 16 C -0.764 4.764 17 C 0.084 3.916 18 H 0.092 0.908 19 O -0.291 6.291 20 C -0.071 4.071 21 C -0.096 4.096 22 C -0.112 4.112 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.133 4.133 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.926 5.393 -6.737 9.112 hybrid contribution 0.523 0.790 0.995 1.374 sum 3.449 6.183 -5.742 9.116 Atomic orbital electron populations 1.21673 0.96620 1.00586 1.01330 1.21862 0.94494 0.99112 1.01992 1.21336 0.79977 0.95507 1.03361 1.53593 1.11934 1.77104 1.20256 1.19749 1.08873 1.26667 0.84332 0.87498 1.25785 0.96910 0.93752 1.01147 1.69975 1.28327 1.16938 1.31079 0.86068 0.79478 0.79482 0.80363 1.19186 1.20643 1.19238 1.12994 0.74272 0.78747 0.75459 1.93351 1.61060 1.81634 1.61879 1.93349 1.50105 1.68989 1.85425 1.31158 1.07428 1.36621 1.01194 1.20610 0.94733 0.91197 0.85055 0.90787 1.88047 1.33227 1.84607 1.23250 1.22857 0.95206 0.98288 0.90721 1.20397 0.94250 0.96361 0.98608 1.21028 0.99519 0.92651 0.98032 1.21145 0.96904 0.95619 1.00556 1.21114 0.94339 0.99356 0.99568 1.21069 0.99583 0.93285 1.00143 1.21077 0.96247 0.96109 0.99833 0.93012 0.93091 0.93524 0.92472 0.91768 0.87892 0.92754 0.91370 0.85202 0.86421 0.89248 0.93740 0.94060 0.85501 0.86192 0.86375 0.86162 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.13 -2.74 6.23 -26.73 -0.17 -2.91 16 3 C 0.12 2.80 4.89 -4.04 -0.02 2.78 16 4 N -0.81 -19.46 2.76 -59.91 -0.17 -19.62 16 5 C -0.25 -6.14 9.10 -15.06 -0.14 -6.28 16 6 H 0.11 2.67 7.40 -52.49 -0.39 2.28 16 7 C 0.04 0.88 4.98 -17.43 -0.09 0.79 16 8 N -0.83 -19.66 11.36 55.49 0.63 -19.03 16 9 Si 0.92 18.35 29.61 -169.99 -5.03 13.32 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 S 2.48 59.25 5.09 -107.50 -0.55 58.70 16 14 O -0.99 -25.14 16.48 -58.61 -0.97 -26.11 16 15 O -0.99 -25.73 17.00 -57.54 -0.98 -26.71 16 16 C -0.65 -13.35 5.87 37.16 0.22 -13.13 16 17 C 0.14 2.65 2.33 -27.88 -0.07 2.58 16 18 H 0.07 1.32 7.62 -51.93 -0.40 0.93 16 19 O -0.37 -6.97 9.06 -35.24 -0.32 -7.29 16 20 C 0.03 0.38 10.84 101.05 1.10 1.48 16 21 C -0.10 -1.57 4.89 -104.62 -0.51 -2.08 16 22 C -0.09 -1.46 9.36 -39.58 -0.37 -1.83 16 23 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 24 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 25 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 26 C -0.11 -1.68 9.67 -39.59 -0.38 -2.07 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.10 2.38 5.41 -51.93 -0.28 2.10 16 33 H 0.05 1.19 7.45 -51.93 -0.39 0.80 16 34 H 0.28 6.16 8.31 -40.82 -0.34 5.82 16 35 H 0.13 2.67 8.14 -51.92 -0.42 2.25 16 36 H 0.12 2.41 8.14 -51.92 -0.42 1.98 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.63 7.99 -51.93 -0.41 0.22 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.13 1.97 7.77 -52.49 -0.41 1.56 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.63 8.04 -52.49 -0.42 1.21 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -29.70 378.34 -9.83 -39.53 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -6.90 Total: 10.11 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -1.25 Total: -28.60 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.46 Total: -38.66 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -2.26 Total: -60.11 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 16 Polarization: 59.25 SS G_CDS: -0.55 Total: 58.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.70 -9.83 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295320404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.311 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds