Wall clock time and date at job start Tue Mar 31 2020 15:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46497 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00358 * 275.00162 * 4 3 2 6 6 H 1.07999 * 120.00227 * 144.33303 * 5 4 3 7 7 C 1.38812 * 119.99590 * 324.33334 * 5 4 3 8 8 N 1.31623 * 120.00027 * 337.25321 * 7 5 4 9 9 Si 1.86798 * 120.00195 * 157.26236 * 7 5 4 10 10 H 1.48503 * 109.47127 * 59.99524 * 9 7 5 11 11 H 1.48498 * 109.47372 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46773 * 299.99947 * 9 7 5 13 13 S 1.65605 * 120.00045 * 94.99855 * 4 3 2 14 14 O 1.42103 * 104.27605 * 339.28247 * 13 4 3 15 15 O 1.42098 * 104.27916 * 211.42684 * 13 4 3 16 16 C 1.81400 * 104.44898 * 95.35076 * 13 4 3 17 17 C 1.52999 * 109.47204 * 174.28153 * 16 13 4 18 18 H 1.09001 * 109.47244 * 302.10830 * 17 16 13 19 19 O 1.42901 * 109.46770 * 62.10849 * 17 16 13 20 20 C 1.42904 * 113.99893 * 207.82851 * 19 17 16 21 21 C 1.50698 * 109.47317 * 182.10950 * 17 16 13 22 22 C 1.38246 * 119.99596 * 279.72874 * 21 17 16 23 23 C 1.38237 * 119.99361 * 179.78718 * 22 21 17 24 24 C 1.38229 * 120.00281 * 0.44318 * 23 22 21 25 25 C 1.38235 * 120.00136 * 359.80948 * 24 23 22 26 26 C 1.38231 * 120.00358 * 99.99905 * 21 17 16 27 27 H 1.08998 * 109.47457 * 300.00671 * 1 2 3 28 28 H 1.09009 * 109.46704 * 60.00161 * 1 2 3 29 29 H 1.08993 * 109.47558 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46994 * 239.99933 * 2 1 3 31 31 H 1.08999 * 109.46707 * 120.00023 * 2 1 3 32 32 H 1.09004 * 109.47390 * 59.99798 * 3 2 1 33 33 H 1.08999 * 109.47371 * 299.99616 * 3 2 1 34 34 H 0.96998 * 120.00024 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.46909 * 54.28494 * 16 13 4 36 36 H 1.09000 * 109.47262 * 294.28325 * 16 13 4 37 37 H 1.08999 * 109.47209 * 175.80292 * 20 19 17 38 38 H 1.09004 * 109.46698 * 55.81130 * 20 19 17 39 39 H 1.08991 * 109.47549 * 295.81241 * 20 19 17 40 40 H 1.08000 * 120.00105 * 359.97438 * 22 21 17 41 41 H 1.08007 * 119.99203 * 180.27448 * 23 22 21 42 42 H 1.08001 * 119.99623 * 179.83869 * 24 23 22 43 43 H 1.07992 * 120.00004 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.99857 * 359.97438 * 26 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3392 1.1823 6 1 5.1173 0.7883 1.2226 7 6 3.6900 1.9427 2.3283 8 7 2.8511 2.9521 2.2285 9 14 4.2088 1.3226 4.0123 10 1 5.6818 1.4476 4.1535 11 1 3.5408 2.1299 5.0645 12 1 3.8168 -0.1024 4.1573 13 16 4.3336 1.5672 -1.4278 14 8 3.3937 1.1643 -2.4145 15 8 5.5264 0.8272 -1.2068 16 6 4.7019 3.3365 -1.5844 17 6 5.5959 3.5653 -2.8047 18 1 6.5098 2.9805 -2.7004 19 8 4.9023 3.1586 -3.9861 20 6 5.7605 2.7300 -5.0454 21 6 5.9443 5.0280 -2.9051 22 6 5.0386 5.9183 -3.4514 23 6 5.3565 7.2607 -3.5394 24 6 6.5834 7.7115 -3.0897 25 6 7.4910 6.8204 -2.5483 26 6 7.1715 5.4787 -2.4562 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.5019 3.3735 3.0293 35 1 5.2163 3.6813 -0.6874 36 1 3.7719 3.8919 -1.7060 37 1 5.1572 2.3681 -5.8779 38 1 6.4054 1.9271 -4.6881 39 1 6.3735 3.5676 -5.3779 40 1 4.0817 5.5655 -3.8065 41 1 4.6471 7.9569 -3.9621 42 1 6.8327 8.7599 -3.1609 43 1 8.4494 7.1726 -2.1966 44 1 7.8805 4.7825 -2.0331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295320404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:35 Heat of formation + Delta-G solvation = -111.279893 kcal Electronic energy + Delta-G solvation = -26943.977234 eV Core-core repulsion = 23180.928250 eV Total energy + Delta-G solvation = -3763.048984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.69558 -38.70649 -38.07454 -37.59341 -36.41442 -34.43353 -33.87157 -32.78491 -31.84185 -30.56660 -27.71170 -27.54629 -25.59155 -24.94884 -23.49385 -22.28570 -21.97475 -20.22832 -19.00859 -18.44911 -18.01250 -17.78591 -17.22426 -16.77598 -16.43347 -16.25014 -15.85552 -15.57332 -15.48676 -15.32569 -15.17826 -14.48337 -14.30190 -14.05356 -13.83545 -13.68665 -13.61477 -13.40869 -13.30518 -12.88333 -12.80185 -12.66486 -12.59847 -12.43091 -12.32399 -12.28328 -12.19409 -12.08848 -11.85984 -11.82971 -11.52147 -11.34815 -11.00525 -10.78709 -9.88090 -9.79853 -9.59206 -8.40244 -6.04780 -0.19443 0.34975 0.44499 1.49901 1.54229 1.61921 2.20085 2.50318 2.54985 2.79292 2.85989 3.31213 3.63339 3.65494 3.76403 3.92014 4.07621 4.13777 4.23951 4.25029 4.34730 4.36766 4.39796 4.43597 4.55998 4.59263 4.65313 4.69028 4.69488 4.88293 5.00346 5.05997 5.10358 5.14593 5.24022 5.26829 5.40276 5.49880 5.55169 5.55944 5.62985 5.78415 6.02705 6.05698 6.42310 6.82377 7.32177 8.55370 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.004578 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.754011 B = 6114.133019 C = 7137.573854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.122 3.878 4 N -0.817 5.817 5 C -0.277 4.277 6 H 0.095 0.905 7 C 0.011 3.989 8 N -0.843 5.843 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.266 1.266 13 S 2.488 3.512 14 O -1.010 7.010 15 O -1.016 7.016 16 C -0.630 4.630 17 C 0.142 3.858 18 H 0.072 0.928 19 O -0.397 6.397 20 C 0.016 3.984 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.129 4.129 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.283 0.717 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 7.656 -5.520 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C -0.004 4.004 4 N -0.641 5.641 5 C -0.424 4.424 6 H 0.112 0.888 7 C -0.200 4.200 8 N -0.481 5.481 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.191 1.191 13 S 2.593 3.407 14 O -1.000 7.000 15 O -1.007 7.007 16 C -0.753 4.753 17 C 0.083 3.917 18 H 0.090 0.910 19 O -0.316 6.316 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.148 4.148 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.168 0.832 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.253 7.142 -6.323 10.078 hybrid contribution 0.453 0.343 0.771 0.958 sum 3.707 7.485 -5.552 10.029 Atomic orbital electron populations 1.21635 0.93476 1.02374 1.02043 1.21850 0.97279 0.97378 1.00856 1.21437 0.79262 0.96844 1.02852 1.53553 1.12499 1.78026 1.19982 1.19789 1.09313 1.28053 0.85212 0.88786 1.26432 0.96561 0.93392 1.03643 1.70014 1.28537 1.17243 1.32283 0.85201 0.79222 0.78996 0.76463 1.18937 1.19494 1.19075 1.12542 0.73565 0.79510 0.75129 1.93311 1.61496 1.82632 1.62564 1.93300 1.51026 1.70557 1.85777 1.30871 1.08131 1.33450 1.02838 1.20556 0.93692 0.93222 0.84193 0.90992 1.87991 1.34714 1.84985 1.23943 1.23112 0.95536 0.99104 0.90184 1.20249 0.95689 0.94932 1.00883 1.21086 0.99165 0.93904 0.98973 1.21465 0.97973 0.94842 1.00006 1.21564 0.93419 1.01032 0.97725 1.21451 1.00920 0.92321 0.99195 1.21279 0.95809 0.97542 1.00128 0.92114 0.92556 0.91225 0.94080 0.92370 0.88403 0.93011 0.90675 0.85354 0.86511 0.87475 0.93826 0.92088 0.86602 0.83704 0.82880 0.83215 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.91 71.98 0.71 -3.67 16 2 C -0.13 -5.51 6.23 30.59 0.19 -5.32 16 3 C 0.12 5.62 4.89 86.38 0.42 6.05 16 4 N -0.82 -40.77 2.76 -343.45 -0.95 -41.71 16 5 C -0.28 -14.02 9.10 84.03 0.76 -13.26 16 6 H 0.09 4.89 7.40 -2.91 -0.02 4.87 16 7 C 0.01 0.54 4.98 84.86 0.42 0.96 16 8 N -0.84 -40.12 11.36 21.65 0.25 -39.87 16 9 Si 0.98 37.12 29.61 68.60 2.03 39.15 16 10 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 11 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 12 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 13 S 2.49 123.29 5.09 -56.49 -0.29 123.01 16 14 O -1.01 -53.17 16.48 -126.63 -2.09 -55.26 16 15 O -1.02 -55.06 17.00 -127.65 -2.17 -57.23 16 16 C -0.63 -26.99 5.87 71.98 0.42 -26.57 16 17 C 0.14 5.40 2.33 29.85 0.07 5.47 16 18 H 0.07 2.68 7.62 -2.39 -0.02 2.66 16 19 O -0.40 -15.20 9.06 -148.97 -1.35 -16.55 16 20 C 0.02 0.48 10.84 113.37 1.23 1.71 16 21 C -0.12 -3.82 4.89 -19.86 -0.10 -3.92 16 22 C -0.11 -3.44 9.36 22.27 0.21 -3.24 16 23 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 24 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 25 C -0.12 -2.74 10.05 22.27 0.22 -2.51 16 26 C -0.13 -3.67 9.67 22.27 0.22 -3.45 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.10 4.59 5.41 -2.38 -0.01 4.58 16 33 H 0.05 2.34 7.45 -2.39 -0.02 2.32 16 34 H 0.28 12.43 8.31 -92.71 -0.77 11.66 16 35 H 0.13 5.48 8.14 -2.39 -0.02 5.46 16 36 H 0.12 4.97 8.14 -2.39 -0.02 4.95 16 37 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.04 1.26 7.99 -2.38 -0.02 1.25 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.12 3.67 7.77 -2.91 -0.02 3.65 16 41 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.13 3.34 8.04 -2.91 -0.02 3.32 16 Total: -1.00 -64.77 378.34 1.64 -63.13 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.97 Total: 38.12 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 5.23 Total: -52.79 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -0.70 Total: -81.59 kcal Atomic # 8 Polarization: -123.43 SS G_CDS: -5.61 Total: -129.04 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 123.29 SS G_CDS: -0.29 Total: 123.01 kcal Total: -64.77 1.64 -63.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295320404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.147 kcal (2) G-P(sol) polarization free energy of solvation -64.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds