Wall clock time and date at job start Tue Mar 31 2020 15:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99951 * 2 1 4 4 C 1.38756 * 120.05571 * 0.25801 * 3 2 1 5 5 C 1.38120 * 119.94321 * 180.32146 * 4 3 2 6 6 C 1.38284 * 120.05567 * 359.67127 * 5 4 3 7 7 C 1.38244 * 120.11430 * 0.03132 * 6 5 4 8 8 C 1.38167 * 120.05247 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.02899 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.46781 * 259.99760 * 9 8 7 11 11 S 1.65599 * 119.99575 * 164.99731 * 10 9 8 12 12 O 1.42101 * 104.27699 * 181.07197 * 11 10 9 13 13 O 1.42100 * 104.27929 * 308.92723 * 11 10 9 14 14 C 1.81396 * 104.44897 * 65.00067 * 11 10 9 15 15 C 1.53007 * 109.46987 * 179.97438 * 14 11 10 16 16 C 1.52994 * 109.47100 * 299.99839 * 15 14 11 17 17 C 1.52991 * 109.47087 * 60.00272 * 15 14 11 18 18 C 1.50705 * 109.47088 * 180.02562 * 15 14 11 19 19 H 1.08004 * 119.99865 * 357.69275 * 18 15 14 20 20 C 1.37867 * 120.00095 * 177.69549 * 18 15 14 21 21 N 1.31514 * 120.00177 * 6.57764 * 20 18 15 22 22 Si 1.86797 * 120.00076 * 186.58100 * 20 18 15 23 23 H 1.48498 * 109.47345 * 84.99233 * 22 20 18 24 24 H 1.48502 * 109.47315 * 204.99215 * 22 20 18 25 25 H 1.48505 * 109.47376 * 324.99125 * 22 20 18 26 26 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47035 * 299.99186 * 1 2 3 28 28 H 1.09001 * 109.47519 * 59.99795 * 1 2 3 29 29 H 1.08005 * 120.02736 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.97363 * 179.70320 * 5 4 3 31 31 H 1.08007 * 119.94415 * 180.02562 * 6 5 4 32 32 H 1.07993 * 119.97630 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47343 * 139.99634 * 9 8 7 34 34 H 1.08996 * 109.46837 * 19.99566 * 9 8 7 35 35 H 0.96991 * 119.99833 * 344.72541 * 10 9 8 36 36 H 1.08996 * 109.47222 * 299.99546 * 14 11 10 37 37 H 1.09004 * 109.47195 * 60.00182 * 14 11 10 38 38 H 1.09003 * 109.46962 * 66.66962 * 16 15 14 39 39 H 1.09002 * 109.47324 * 186.66886 * 16 15 14 40 40 H 1.08997 * 109.47363 * 306.67232 * 16 15 14 41 41 H 1.08996 * 109.47527 * 60.00016 * 17 15 14 42 42 H 1.09006 * 109.47223 * 180.02562 * 17 15 14 43 43 H 1.09005 * 109.47147 * 299.99634 * 17 15 14 44 44 H 0.96999 * 120.00482 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6048 -0.0013 6 6 3.3018 3.6758 -0.0066 7 6 4.0559 2.5172 -0.0057 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 0.0001 10 7 4.3142 -0.5215 -1.3590 11 16 5.4363 -1.6787 -1.7386 12 8 5.2176 -1.9397 -3.1182 13 8 6.6676 -1.1360 -1.2819 14 6 4.9626 -3.1145 -0.7363 15 6 5.9356 -4.2651 -1.0018 16 6 5.8891 -4.6404 -2.4843 17 6 7.3543 -3.8294 -0.6302 18 6 5.5417 -5.4582 -0.1695 19 1 4.7060 -5.3896 0.5111 20 6 6.2482 -6.6372 -0.2770 21 7 7.3419 -6.6843 -1.0059 22 14 5.6521 -8.1677 0.6126 23 1 4.6405 -8.8634 -0.2228 24 1 6.8007 -9.0764 0.8584 25 1 5.0412 -7.7802 1.9095 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.2127 2.3204 0.0100 30 1 1.3339 4.5114 -0.0020 31 1 3.7921 4.6382 -0.0114 32 1 5.1343 2.5753 -0.0103 33 1 3.7949 -0.7102 0.6643 34 1 5.2624 0.2458 0.3472 35 1 3.6945 -0.2065 -2.0354 36 1 4.9954 -2.8470 0.3198 37 1 3.9520 -3.4252 -1.0014 38 1 6.2860 -3.8182 -3.0798 39 1 6.4906 -5.5339 -2.6519 40 1 4.8578 -4.8365 -2.7773 41 1 7.3874 -3.5621 0.4260 42 1 8.0475 -4.6490 -0.8198 43 1 7.6389 -2.9666 -1.2325 44 1 7.8392 -7.5137 -1.0812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295404249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:28 Heat of formation + Delta-G solvation = -86.983211 kcal Electronic energy + Delta-G solvation = -26510.403827 eV Core-core repulsion = 22748.408426 eV Total energy + Delta-G solvation = -3761.995400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47953 -37.68517 -36.46394 -36.22112 -35.36531 -35.11392 -31.63806 -31.20315 -30.30015 -27.59583 -26.56585 -25.69286 -25.65478 -25.17691 -22.37385 -21.69625 -19.56138 -18.67900 -18.30372 -17.27571 -16.52736 -16.37984 -15.97181 -15.77937 -15.41484 -15.23585 -14.72649 -14.63958 -14.36381 -14.15937 -13.44696 -13.23526 -12.95835 -12.79002 -12.76935 -12.46361 -12.27904 -11.96181 -11.85260 -11.63408 -11.36322 -11.35713 -11.16304 -11.00626 -10.93202 -10.86079 -10.65562 -10.34872 -10.26362 -10.05309 -9.62205 -9.56870 -9.16481 -9.15493 -8.64998 -8.40986 -8.34769 -6.00841 -4.12072 0.84222 1.13814 1.21315 3.05188 3.26989 3.28175 3.34997 3.36702 3.62622 4.34928 4.40898 4.46302 4.56928 4.74484 4.84289 4.88972 4.90488 5.06205 5.10509 5.23926 5.26841 5.32455 5.47245 5.52587 5.73556 5.76807 5.81494 5.98829 6.12901 6.20551 6.30985 6.44484 6.53961 6.74170 6.83357 6.95958 7.07896 7.14837 7.23982 7.35773 7.53316 7.71004 8.01585 8.13992 8.37488 8.86310 9.52803 11.00272 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.003386 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.917971 B = 8266.716614 C = 9076.165945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.141 3.859 4 C -0.213 4.213 5 C -0.078 4.078 6 C -0.160 4.160 7 C -0.063 4.063 8 C -0.126 4.126 9 C 0.166 3.834 10 N -1.123 6.123 11 S 2.595 3.405 12 O -0.966 6.966 13 O -0.966 6.966 14 C -0.582 4.582 15 C 0.081 3.919 16 C -0.160 4.160 17 C -0.164 4.164 18 C -0.501 4.501 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.026 0.974 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.097 0.903 43 H 0.027 0.973 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 18.247 3.047 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.095 3.905 4 C -0.232 4.232 5 C -0.096 4.096 6 C -0.179 4.179 7 C -0.082 4.082 8 C -0.128 4.128 9 C 0.040 3.960 10 N -0.880 5.880 11 S 2.693 3.307 12 O -0.957 6.957 13 O -0.956 6.956 14 C -0.715 4.715 15 C 0.079 3.921 16 C -0.218 4.218 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.121 0.879 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.244 0.756 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.045 0.955 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.115 0.885 43 H 0.046 0.954 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.606 17.993 2.517 21.558 hybrid contribution -1.473 -0.794 0.710 1.818 sum -13.079 17.199 3.227 21.847 Atomic orbital electron populations 1.23098 0.78370 1.04295 1.01151 1.86164 1.21286 1.26377 1.88142 1.18920 0.91727 0.84498 0.95357 1.21231 1.00041 0.92340 1.09566 1.20961 0.94736 0.96923 0.96993 1.21071 0.93888 0.98464 1.04449 1.21057 1.00449 0.90846 0.95865 1.19250 0.90479 0.95698 1.07397 1.19973 0.99733 0.92501 0.83786 1.55835 1.55397 1.58452 1.18280 1.05542 0.73848 0.75706 0.75627 1.93551 1.85484 1.85373 1.31277 1.93529 1.41856 1.77141 1.83027 1.30525 1.10975 1.16487 1.13531 1.17929 0.89565 0.90097 0.94488 1.22205 1.00903 1.03081 0.95631 1.22304 0.99923 1.00717 0.99194 1.20947 1.14956 0.95005 1.23155 0.92295 1.24934 0.94604 0.98782 0.95431 1.69814 1.15373 1.26792 1.40094 0.86570 0.78339 0.82883 0.79944 1.20587 1.21232 1.20019 0.87948 0.92713 0.92644 0.85411 0.85859 0.85720 0.84768 0.90699 0.89473 0.75629 0.86491 0.86241 0.95512 0.88800 0.94616 0.94514 0.88473 0.95417 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.43 9.74 -19.44 -0.19 -3.62 16 3 C 0.14 1.57 6.66 -39.22 -0.26 1.31 16 4 C -0.21 -1.94 9.04 -39.43 -0.36 -2.29 16 5 C -0.08 -0.65 10.04 -39.61 -0.40 -1.04 16 6 C -0.16 -1.41 10.04 -39.56 -0.40 -1.81 16 7 C -0.06 -0.66 9.67 -39.61 -0.38 -1.04 16 8 C -0.13 -1.48 5.29 -104.47 -0.55 -2.04 16 9 C 0.17 2.18 5.92 -5.19 -0.03 2.15 16 10 N -1.12 -16.60 5.88 -11.65 -0.07 -16.67 16 11 S 2.59 49.50 4.49 -107.50 -0.48 49.01 16 12 O -0.97 -20.92 15.84 -57.54 -0.91 -21.83 16 13 O -0.97 -20.55 15.12 -57.54 -0.87 -21.42 16 14 C -0.58 -11.62 5.01 37.16 0.19 -11.43 16 15 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 16 C -0.16 -4.02 7.58 37.15 0.28 -3.73 16 17 C -0.16 -4.09 7.80 37.15 0.29 -3.80 16 18 C -0.50 -13.30 8.01 -34.44 -0.28 -13.57 16 19 H 0.06 1.52 7.75 -52.48 -0.41 1.12 16 20 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 21 N -0.88 -24.29 9.39 55.43 0.52 -23.77 16 22 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 28 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 29 H 0.13 0.88 6.30 -52.48 -0.33 0.55 16 30 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 32 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 33 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 34 H 0.09 1.11 7.56 -51.93 -0.39 0.72 16 35 H 0.41 5.57 8.61 -34.47 -0.30 5.27 16 36 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 37 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 38 H 0.03 0.64 5.96 -51.93 -0.31 0.33 16 39 H 0.09 2.52 5.99 -51.93 -0.31 2.21 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.10 2.61 6.02 -51.93 -0.31 2.30 16 43 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -32.99 361.78 -9.01 -42.00 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.36 Total: 7.66 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: -1.08 Total: -32.56 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.45 Total: -40.45 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -1.97 Total: -46.86 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 49.50 SS G_CDS: -0.48 Total: 49.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.99 -9.01 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295404249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.984 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds