Wall clock time and date at job start Tue Mar 31 2020 15:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99951 * 2 1 4 4 C 1.38756 * 120.05571 * 0.25801 * 3 2 1 5 5 C 1.38120 * 119.94321 * 180.32146 * 4 3 2 6 6 C 1.38284 * 120.05567 * 359.67127 * 5 4 3 7 7 C 1.38244 * 120.11430 * 0.03132 * 6 5 4 8 8 C 1.38167 * 120.05247 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.02899 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.46781 * 259.99760 * 9 8 7 11 11 S 1.65599 * 119.99575 * 164.99731 * 10 9 8 12 12 O 1.42101 * 104.27699 * 181.07197 * 11 10 9 13 13 O 1.42100 * 104.27929 * 308.92723 * 11 10 9 14 14 C 1.81396 * 104.44897 * 65.00067 * 11 10 9 15 15 C 1.53007 * 109.46987 * 179.97438 * 14 11 10 16 16 C 1.52994 * 109.47100 * 299.99839 * 15 14 11 17 17 C 1.52991 * 109.47087 * 60.00272 * 15 14 11 18 18 C 1.50705 * 109.47088 * 180.02562 * 15 14 11 19 19 H 1.08004 * 119.99865 * 357.69275 * 18 15 14 20 20 C 1.37867 * 120.00095 * 177.69549 * 18 15 14 21 21 N 1.31514 * 120.00177 * 6.57764 * 20 18 15 22 22 Si 1.86797 * 120.00076 * 186.58100 * 20 18 15 23 23 H 1.48498 * 109.47345 * 84.99233 * 22 20 18 24 24 H 1.48502 * 109.47315 * 204.99215 * 22 20 18 25 25 H 1.48505 * 109.47376 * 324.99125 * 22 20 18 26 26 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47035 * 299.99186 * 1 2 3 28 28 H 1.09001 * 109.47519 * 59.99795 * 1 2 3 29 29 H 1.08005 * 120.02736 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.97363 * 179.70320 * 5 4 3 31 31 H 1.08007 * 119.94415 * 180.02562 * 6 5 4 32 32 H 1.07993 * 119.97630 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47343 * 139.99634 * 9 8 7 34 34 H 1.08996 * 109.46837 * 19.99566 * 9 8 7 35 35 H 0.96991 * 119.99833 * 344.72541 * 10 9 8 36 36 H 1.08996 * 109.47222 * 299.99546 * 14 11 10 37 37 H 1.09004 * 109.47195 * 60.00182 * 14 11 10 38 38 H 1.09003 * 109.46962 * 66.66962 * 16 15 14 39 39 H 1.09002 * 109.47324 * 186.66886 * 16 15 14 40 40 H 1.08997 * 109.47363 * 306.67232 * 16 15 14 41 41 H 1.08996 * 109.47527 * 60.00016 * 17 15 14 42 42 H 1.09006 * 109.47223 * 180.02562 * 17 15 14 43 43 H 1.09005 * 109.47147 * 299.99634 * 17 15 14 44 44 H 0.96999 * 120.00482 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6048 -0.0013 6 6 3.3018 3.6758 -0.0066 7 6 4.0559 2.5172 -0.0057 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 0.0001 10 7 4.3142 -0.5215 -1.3590 11 16 5.4363 -1.6787 -1.7386 12 8 5.2176 -1.9397 -3.1182 13 8 6.6676 -1.1360 -1.2819 14 6 4.9626 -3.1145 -0.7363 15 6 5.9356 -4.2651 -1.0018 16 6 5.8891 -4.6404 -2.4843 17 6 7.3543 -3.8294 -0.6302 18 6 5.5417 -5.4582 -0.1695 19 1 4.7060 -5.3896 0.5111 20 6 6.2482 -6.6372 -0.2770 21 7 7.3419 -6.6843 -1.0059 22 14 5.6521 -8.1677 0.6126 23 1 4.6405 -8.8634 -0.2228 24 1 6.8007 -9.0764 0.8584 25 1 5.0412 -7.7802 1.9095 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.2127 2.3204 0.0100 30 1 1.3339 4.5114 -0.0020 31 1 3.7921 4.6382 -0.0114 32 1 5.1343 2.5753 -0.0103 33 1 3.7949 -0.7102 0.6643 34 1 5.2624 0.2458 0.3472 35 1 3.6945 -0.2065 -2.0354 36 1 4.9954 -2.8470 0.3198 37 1 3.9520 -3.4252 -1.0014 38 1 6.2860 -3.8182 -3.0798 39 1 6.4906 -5.5339 -2.6519 40 1 4.8578 -4.8365 -2.7773 41 1 7.3874 -3.5621 0.4260 42 1 8.0475 -4.6490 -0.8198 43 1 7.6389 -2.9666 -1.2325 44 1 7.8392 -7.5137 -1.0812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295404249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:27 Heat of formation + Delta-G solvation = -108.995478 kcal Electronic energy + Delta-G solvation = -26511.358350 eV Core-core repulsion = 22748.408426 eV Total energy + Delta-G solvation = -3762.949924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19375 -38.41123 -38.11552 -38.07387 -36.89424 -36.30188 -33.63099 -32.06174 -30.98863 -28.31798 -28.17411 -27.68281 -27.24853 -26.58547 -23.05998 -22.48147 -21.37508 -20.22065 -19.08939 -18.70348 -17.88622 -17.50045 -17.24437 -16.84263 -16.67356 -16.54301 -16.33787 -15.68592 -15.31494 -15.08681 -14.87103 -14.65425 -14.41396 -14.27558 -13.89403 -13.73862 -13.52796 -13.32540 -13.03169 -12.97492 -12.85081 -12.78763 -12.70320 -12.49190 -12.37427 -12.20344 -12.13141 -11.97538 -11.93620 -11.67152 -11.55986 -11.36478 -10.72607 -10.38809 -10.29542 -9.88740 -9.12945 -8.02508 -6.20534 -0.60500 0.32781 0.49666 1.45070 1.46482 1.54749 1.96047 2.41332 2.45164 2.82770 2.87974 3.19290 3.34206 3.67105 3.87625 4.01690 4.08946 4.19431 4.28327 4.37250 4.40893 4.43105 4.51408 4.60664 4.64292 4.77707 4.78998 4.85300 4.86867 4.92493 5.00752 5.06653 5.10206 5.38093 5.39570 5.50484 5.50951 5.60476 5.65454 5.87374 5.98089 6.08724 6.13070 6.35854 6.47395 6.83759 7.47274 8.97293 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.003386 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.917971 B = 8266.716614 C = 9076.165945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.128 3.872 4 C -0.215 4.215 5 C -0.075 4.075 6 C -0.163 4.163 7 C -0.076 4.076 8 C -0.148 4.148 9 C 0.160 3.840 10 N -1.107 6.107 11 S 2.616 3.384 12 O -0.994 6.994 13 O -0.989 6.989 14 C -0.585 4.585 15 C 0.069 3.931 16 C -0.157 4.157 17 C -0.159 4.159 18 C -0.518 4.518 19 H 0.063 0.937 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.268 1.268 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.419 0.581 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.822 19.800 3.942 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.082 3.918 4 C -0.234 4.234 5 C -0.093 4.093 6 C -0.181 4.181 7 C -0.094 4.094 8 C -0.151 4.151 9 C 0.034 3.966 10 N -0.867 5.867 11 S 2.713 3.287 12 O -0.984 6.984 13 O -0.979 6.979 14 C -0.717 4.717 15 C 0.067 3.933 16 C -0.215 4.215 17 C -0.217 4.217 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.545 5.545 22 Si 0.780 3.220 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.192 1.192 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.748 19.542 3.413 24.136 hybrid contribution -0.871 -1.170 0.445 1.525 sum -14.619 18.372 3.858 23.793 Atomic orbital electron populations 1.23337 0.76679 1.05297 1.02394 1.86118 1.23196 1.26813 1.88288 1.19094 0.91709 0.85230 0.95807 1.21531 1.01170 0.91922 1.08769 1.21366 0.94817 0.97793 0.95294 1.21379 0.94354 0.98816 1.03581 1.21234 1.00960 0.91099 0.96148 1.19214 0.90924 0.95298 1.09640 1.20138 1.00257 0.93680 0.82478 1.55425 1.54684 1.57033 1.19524 1.04657 0.73791 0.75652 0.74592 1.93505 1.85974 1.85978 1.32974 1.93494 1.43706 1.77473 1.83217 1.30455 1.10562 1.15575 1.15130 1.17931 0.90246 0.91428 0.93711 1.22143 1.00748 1.02109 0.96474 1.22231 1.00082 0.99922 0.99492 1.21282 1.15006 0.95943 1.23455 0.91926 1.25675 0.94719 1.01507 0.96258 1.69952 1.16205 1.27267 1.41119 0.85629 0.77739 0.79493 0.79103 1.20251 1.21299 1.19221 0.87208 0.91301 0.91503 0.83263 0.82956 0.83544 0.84459 0.90178 0.89562 0.74672 0.84679 0.84665 0.95322 0.91062 0.94010 0.94131 0.90823 0.94973 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.91 9.74 -92.46 -0.90 -7.81 16 3 C 0.13 2.64 6.66 22.51 0.15 2.79 16 4 C -0.22 -3.34 9.04 22.37 0.20 -3.13 16 5 C -0.07 -1.00 10.04 22.25 0.22 -0.78 16 6 C -0.16 -2.46 10.04 22.28 0.22 -2.24 16 7 C -0.08 -1.47 9.67 22.25 0.22 -1.25 16 8 C -0.15 -3.33 5.29 -19.77 -0.10 -3.44 16 9 C 0.16 4.07 5.92 85.63 0.51 4.58 16 10 N -1.11 -31.85 5.88 -190.77 -1.12 -32.97 16 11 S 2.62 98.73 4.49 -56.49 -0.25 98.47 16 12 O -0.99 -42.85 15.84 -127.65 -2.02 -44.87 16 13 O -0.99 -41.97 15.12 -127.65 -1.93 -43.90 16 14 C -0.58 -22.89 5.01 71.98 0.36 -22.53 16 15 C 0.07 3.39 0.52 -52.93 -0.03 3.36 16 16 C -0.16 -7.95 7.58 71.98 0.55 -7.40 16 17 C -0.16 -8.06 7.80 71.98 0.56 -7.50 16 18 C -0.52 -27.32 8.01 25.60 0.20 -27.12 16 19 H 0.06 3.18 7.75 -2.91 -0.02 3.15 16 20 C 0.02 0.95 5.09 84.65 0.43 1.38 16 21 N -0.91 -50.69 9.39 21.44 0.20 -50.49 16 22 Si 0.95 42.43 29.54 68.60 2.03 44.45 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 0.64 7.65 -2.38 -0.02 0.63 16 28 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 29 H 0.15 1.56 6.30 -2.91 -0.02 1.54 16 30 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 31 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.14 2.43 8.04 -2.91 -0.02 2.41 16 33 H 0.08 1.93 7.86 -2.39 -0.02 1.91 16 34 H 0.09 2.18 7.56 -2.39 -0.02 2.16 16 35 H 0.42 10.98 8.61 -96.75 -0.83 10.15 16 36 H 0.13 4.72 8.14 -2.39 -0.02 4.70 16 37 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 38 H 0.03 1.39 5.96 -2.39 -0.01 1.37 16 39 H 0.07 3.91 5.99 -2.39 -0.01 3.90 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 4.06 6.02 -2.38 -0.01 4.04 16 43 H 0.03 1.55 5.47 -2.38 -0.01 1.54 16 44 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -70.23 361.78 0.79 -69.45 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.18 Total: 29.62 kcal Atomic # 6 Polarization: -66.55 SS G_CDS: 4.60 Total: -61.95 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -0.92 Total: -83.46 kcal Atomic # 8 Polarization: -91.73 SS G_CDS: -4.85 Total: -96.58 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 98.73 SS G_CDS: -0.25 Total: 98.47 kcal Total: -70.23 0.79 -69.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295404249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.546 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds