Wall clock time and date at job start Tue Mar 31 2020 15:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38265 * 119.94517 * 269.72577 * 4 3 2 6 6 C 1.38150 * 120.05162 * 179.72908 * 5 4 3 7 7 C 1.38736 * 119.94524 * 0.56539 * 6 5 4 8 8 O 1.35901 * 120.05287 * 179.68288 * 7 6 5 9 9 C 1.38733 * 119.88625 * 359.71140 * 7 6 5 10 10 C 1.38139 * 119.94603 * 359.97438 * 9 7 6 11 11 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 12 12 O 1.42097 * 104.27550 * 206.06816 * 11 2 1 13 13 O 1.42103 * 104.27486 * 333.92716 * 11 2 1 14 14 C 1.81404 * 104.45045 * 89.99736 * 11 2 1 15 15 C 1.52997 * 109.46887 * 179.97438 * 14 11 2 16 16 C 1.52993 * 109.47555 * 300.00034 * 15 14 11 17 17 C 1.53000 * 109.47105 * 60.00395 * 15 14 11 18 18 C 1.50702 * 109.46719 * 180.02562 * 15 14 11 19 19 H 1.07995 * 120.00410 * 0.02562 * 18 15 14 20 20 C 1.37884 * 119.99814 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99947 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99881 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46914 * 60.00012 * 22 20 18 24 24 H 1.48499 * 109.47019 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47148 * 299.99994 * 22 20 18 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 1.07996 * 119.97272 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.02531 * 180.24992 * 6 5 4 33 33 H 0.96701 * 113.99830 * 270.01907 * 8 7 6 34 34 H 1.07998 * 120.02413 * 179.97438 * 9 7 6 35 35 H 1.08002 * 119.97347 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47042 * 299.99928 * 14 11 2 37 37 H 1.09000 * 109.47032 * 60.00128 * 14 11 2 38 38 H 1.09002 * 109.47062 * 60.00059 * 16 15 14 39 39 H 1.09000 * 109.47261 * 180.02562 * 16 15 14 40 40 H 1.09007 * 109.47058 * 300.00580 * 16 15 14 41 41 H 1.08993 * 109.47311 * 59.99776 * 17 15 14 42 42 H 1.09000 * 109.46918 * 179.97438 * 17 15 14 43 43 H 1.09002 * 109.46914 * 299.99575 * 17 15 14 44 44 H 0.96999 * 119.99558 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3766 2.5945 1.9573 6 6 1.5035 3.0468 3.2565 7 6 2.6061 2.6781 4.0136 8 8 2.7363 3.1270 5.2897 9 6 3.5756 1.8509 3.4655 10 6 3.4409 1.3961 2.1682 11 16 2.2930 -1.4342 -0.0006 12 8 3.5395 -1.1194 0.6047 13 8 1.3969 -2.3564 0.6042 14 6 2.5193 -1.8255 -1.7575 15 6 3.2818 -3.1450 -1.8919 16 6 4.6493 -3.0148 -1.2182 17 6 2.4860 -4.2648 -1.2184 18 6 3.4703 -3.4697 -3.3514 19 1 3.0852 -2.8016 -4.1074 20 6 4.1345 -4.6200 -3.7215 21 7 4.6040 -5.4334 -2.8009 22 14 4.3676 -5.0228 -5.5307 23 1 5.1404 -3.9361 -6.1842 24 1 5.1078 -6.3035 -5.6612 25 1 3.0403 -5.1488 -6.1847 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 0.5212 2.8855 1.3658 32 1 0.7476 3.6910 3.6807 33 1 3.2124 3.9653 5.3651 34 1 4.4350 1.5628 4.0528 35 1 4.1952 0.7517 1.7412 36 1 1.5450 -1.9178 -2.2375 37 1 3.0866 -1.0279 -2.2372 38 1 4.5133 -2.7797 -0.1626 39 1 5.1927 -3.9548 -1.3144 40 1 5.2162 -2.2170 -1.6980 41 1 1.5118 -4.3576 -1.6984 42 1 3.0291 -5.2050 -1.3146 43 1 2.3500 -4.0297 -0.1628 44 1 5.0716 -6.2423 -3.0613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295523206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:46 Heat of formation + Delta-G solvation = -86.079389 kcal Electronic energy + Delta-G solvation = -26766.013439 eV Core-core repulsion = 23004.057231 eV Total energy + Delta-G solvation = -3761.956208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86538 -37.49984 -36.58276 -36.28941 -35.62506 -35.21512 -31.67803 -31.04522 -30.74749 -27.10485 -26.64527 -25.73184 -25.24904 -24.45350 -22.83107 -21.54594 -19.47469 -18.52602 -18.40549 -17.37352 -16.38715 -16.03627 -15.97808 -15.57483 -15.48598 -15.11640 -14.77272 -14.45855 -14.05328 -13.57212 -13.40092 -13.21141 -13.00957 -12.76899 -12.51815 -12.40209 -12.21518 -12.08062 -11.93448 -11.65620 -11.38582 -11.29954 -11.06259 -11.05129 -10.94696 -10.71505 -10.51313 -10.39747 -10.27666 -10.12108 -9.66891 -9.60659 -9.03908 -9.00471 -8.71782 -8.55397 -8.41518 -6.04915 -4.17238 0.75242 1.14804 1.31417 3.07130 3.25539 3.31285 3.32630 3.60659 4.07733 4.32299 4.41103 4.62031 4.66045 4.77535 4.91196 4.92053 5.19839 5.23548 5.35388 5.47411 5.53303 5.59376 5.65509 5.67392 5.76892 5.82597 5.94346 6.07756 6.21279 6.36086 6.37249 6.54906 6.65628 6.68683 6.77946 6.79465 6.89327 7.02921 7.29667 7.48693 7.49337 7.66075 7.96577 8.07937 8.31407 8.81101 9.48246 10.96304 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.003157 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.085824 B = 8866.125405 C = 9121.060381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.008 6.008 3 C 0.165 3.835 4 C -0.116 4.116 5 C -0.089 4.089 6 C -0.154 4.154 7 C 0.102 3.898 8 O -0.501 6.501 9 C -0.149 4.149 10 C -0.078 4.078 11 S 2.591 3.409 12 O -0.959 6.959 13 O -0.960 6.960 14 C -0.583 4.583 15 C 0.083 3.917 16 C -0.163 4.163 17 C -0.164 4.164 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.387 0.613 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.029 0.971 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 17.627 7.485 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.844 5.844 3 C 0.040 3.960 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.173 4.173 7 C 0.057 3.943 8 O -0.311 6.311 9 C -0.167 4.167 10 C -0.097 4.097 11 S 2.690 3.310 12 O -0.949 6.949 13 O -0.951 6.951 14 C -0.716 4.716 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.222 4.222 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.243 0.757 34 H 0.146 0.854 35 H 0.167 0.833 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.407 16.490 8.433 19.294 hybrid contribution 0.173 0.404 -1.688 1.744 sum -5.234 16.894 6.745 18.929 Atomic orbital electron populations 1.21411 0.78901 1.02687 1.01986 1.57846 1.14961 1.21209 1.90343 1.20130 0.97550 0.85761 0.92580 1.20342 0.95344 0.98428 0.97728 1.20905 0.98214 0.96978 0.94692 1.21331 0.98900 1.02685 0.94380 1.18549 0.94554 0.97356 0.83816 1.84832 1.79540 1.43306 1.23454 1.21494 0.99514 0.99897 0.95845 1.21462 0.98024 0.96967 0.93235 1.05851 0.73689 0.72156 0.79294 1.93491 1.43561 1.82707 1.75145 1.93541 1.65028 1.61265 1.75219 1.30580 1.09816 1.10234 1.20978 1.17919 0.90805 0.85431 0.97813 1.22267 0.99474 1.03781 0.96536 1.22277 0.99521 1.03869 0.96500 1.20914 1.36637 1.06835 0.89943 0.92376 1.24941 0.95193 0.96017 0.97557 1.69792 1.37443 1.12653 1.32260 0.86598 0.78287 0.77689 0.85058 1.20259 1.21157 1.20269 0.92795 0.91386 0.90930 0.88965 0.89657 0.85762 0.85681 0.75719 0.85369 0.83286 0.86542 0.86465 0.95259 0.88708 0.94503 0.94533 0.88637 0.95382 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 10.24 59.85 0.61 1.71 16 2 N -1.01 -13.88 3.10 -123.04 -0.38 -14.26 16 3 C 0.17 1.91 5.43 -5.19 -0.03 1.88 16 4 C -0.12 -1.44 5.46 -104.60 -0.57 -2.01 16 5 C -0.09 -0.95 9.69 -39.60 -0.38 -1.33 16 6 C -0.15 -1.65 9.99 -39.43 -0.39 -2.04 16 7 C 0.10 1.19 6.71 -39.21 -0.26 0.92 16 8 O -0.50 -5.09 13.50 -19.43 -0.26 -5.35 16 9 C -0.15 -1.88 9.99 -39.43 -0.39 -2.27 16 10 C -0.08 -1.07 9.11 -39.61 -0.36 -1.43 16 11 S 2.59 47.43 4.36 -107.50 -0.47 46.96 16 12 O -0.96 -18.81 12.43 -57.54 -0.72 -19.53 16 13 O -0.96 -20.35 14.71 -57.54 -0.85 -21.19 16 14 C -0.58 -11.16 5.12 37.16 0.19 -10.97 16 15 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 16 C -0.16 -3.94 7.77 37.15 0.29 -3.65 16 17 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 18 C -0.50 -13.13 8.01 -34.44 -0.28 -13.41 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -24.02 9.35 55.43 0.52 -23.50 16 22 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.55 7.94 -51.93 -0.41 0.14 16 28 H 0.07 0.83 7.79 -51.93 -0.40 0.43 16 29 H 0.09 1.04 7.55 -51.93 -0.39 0.65 16 30 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.39 1.89 9.06 45.56 0.41 2.30 16 34 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.15 2.20 6.47 -52.49 -0.34 1.86 16 36 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 37 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 38 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 39 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 43 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -32.89 360.00 -8.88 -41.77 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.67 Total: 7.05 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: -1.46 Total: -32.84 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.14 Total: -37.77 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.82 Total: -46.07 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 47.43 SS G_CDS: -0.47 Total: 46.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.89 -8.88 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295523206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.312 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds