Wall clock time and date at job start Tue Mar 31 2020 15:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38265 * 119.94517 * 269.72577 * 4 3 2 6 6 C 1.38150 * 120.05162 * 179.72908 * 5 4 3 7 7 C 1.38736 * 119.94524 * 0.56539 * 6 5 4 8 8 O 1.35901 * 120.05287 * 179.68288 * 7 6 5 9 9 C 1.38733 * 119.88625 * 359.71140 * 7 6 5 10 10 C 1.38139 * 119.94603 * 359.97438 * 9 7 6 11 11 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 12 12 O 1.42097 * 104.27550 * 206.06816 * 11 2 1 13 13 O 1.42103 * 104.27486 * 333.92716 * 11 2 1 14 14 C 1.81404 * 104.45045 * 89.99736 * 11 2 1 15 15 C 1.52997 * 109.46887 * 179.97438 * 14 11 2 16 16 C 1.52993 * 109.47555 * 300.00034 * 15 14 11 17 17 C 1.53000 * 109.47105 * 60.00395 * 15 14 11 18 18 C 1.50702 * 109.46719 * 180.02562 * 15 14 11 19 19 H 1.07995 * 120.00410 * 0.02562 * 18 15 14 20 20 C 1.37884 * 119.99814 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99947 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99881 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46914 * 60.00012 * 22 20 18 24 24 H 1.48499 * 109.47019 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47148 * 299.99994 * 22 20 18 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 1.07996 * 119.97272 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.02531 * 180.24992 * 6 5 4 33 33 H 0.96701 * 113.99830 * 270.01907 * 8 7 6 34 34 H 1.07998 * 120.02413 * 179.97438 * 9 7 6 35 35 H 1.08002 * 119.97347 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47042 * 299.99928 * 14 11 2 37 37 H 1.09000 * 109.47032 * 60.00128 * 14 11 2 38 38 H 1.09002 * 109.47062 * 60.00059 * 16 15 14 39 39 H 1.09000 * 109.47261 * 180.02562 * 16 15 14 40 40 H 1.09007 * 109.47058 * 300.00580 * 16 15 14 41 41 H 1.08993 * 109.47311 * 59.99776 * 17 15 14 42 42 H 1.09000 * 109.46918 * 179.97438 * 17 15 14 43 43 H 1.09002 * 109.46914 * 299.99575 * 17 15 14 44 44 H 0.96999 * 119.99558 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3766 2.5945 1.9573 6 6 1.5035 3.0468 3.2565 7 6 2.6061 2.6781 4.0136 8 8 2.7363 3.1270 5.2897 9 6 3.5756 1.8509 3.4655 10 6 3.4409 1.3961 2.1682 11 16 2.2930 -1.4342 -0.0006 12 8 3.5395 -1.1194 0.6047 13 8 1.3969 -2.3564 0.6042 14 6 2.5193 -1.8255 -1.7575 15 6 3.2818 -3.1450 -1.8919 16 6 4.6493 -3.0148 -1.2182 17 6 2.4860 -4.2648 -1.2184 18 6 3.4703 -3.4697 -3.3514 19 1 3.0852 -2.8016 -4.1074 20 6 4.1345 -4.6200 -3.7215 21 7 4.6040 -5.4334 -2.8009 22 14 4.3676 -5.0228 -5.5307 23 1 5.1404 -3.9361 -6.1842 24 1 5.1078 -6.3035 -5.6612 25 1 3.0403 -5.1488 -6.1847 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 0.5212 2.8855 1.3658 32 1 0.7476 3.6910 3.6807 33 1 3.2124 3.9653 5.3651 34 1 4.4350 1.5628 4.0528 35 1 4.1952 0.7517 1.7412 36 1 1.5450 -1.9178 -2.2375 37 1 3.0866 -1.0279 -2.2372 38 1 4.5133 -2.7797 -0.1626 39 1 5.1927 -3.9548 -1.3144 40 1 5.2162 -2.2170 -1.6980 41 1 1.5118 -4.3576 -1.6984 42 1 3.0291 -5.2050 -1.3146 43 1 2.3500 -4.0297 -0.1628 44 1 5.0716 -6.2423 -3.0613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295523206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:46 Heat of formation + Delta-G solvation = -108.621048 kcal Electronic energy + Delta-G solvation = -26766.990919 eV Core-core repulsion = 23004.057231 eV Total energy + Delta-G solvation = -3762.933687 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70831 -38.40962 -38.12266 -38.04238 -36.85038 -36.47381 -33.62913 -31.90070 -31.63319 -28.40091 -27.87657 -27.69520 -27.25158 -25.43833 -23.69167 -22.43601 -21.29951 -19.72999 -19.33856 -18.74489 -17.86926 -17.44500 -17.18956 -16.71014 -16.55599 -16.49381 -16.17662 -15.65205 -15.12165 -14.92329 -14.64062 -14.42066 -14.33778 -14.25759 -14.01716 -13.77310 -13.28174 -13.18438 -13.08047 -12.96688 -12.85642 -12.79459 -12.75184 -12.50423 -12.36373 -12.27297 -12.13178 -12.11158 -11.94204 -11.56527 -11.36656 -11.32657 -10.63809 -10.41298 -9.99538 -9.90009 -9.47923 -8.03058 -6.22196 -0.63412 0.25050 0.43944 1.45465 1.45614 1.53043 1.86615 2.44222 2.72580 2.95743 3.18795 3.27083 3.34537 3.73962 3.92856 3.99541 4.10167 4.11560 4.17068 4.43459 4.51452 4.60084 4.65735 4.73258 4.77153 4.85113 4.86488 4.97184 4.98625 5.01653 5.02979 5.07976 5.17838 5.36820 5.38579 5.49382 5.49441 5.62259 5.64075 5.74826 5.95829 5.96942 6.11498 6.33967 6.82797 6.86747 7.46301 8.96488 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.003157 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.085824 B = 8866.125405 C = 9121.060381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.999 5.999 3 C 0.157 3.843 4 C -0.129 4.129 5 C -0.082 4.082 6 C -0.156 4.156 7 C 0.099 3.901 8 O -0.511 6.511 9 C -0.169 4.169 10 C -0.102 4.102 11 S 2.605 3.395 12 O -0.978 6.978 13 O -0.994 6.994 14 C -0.586 4.586 15 C 0.070 3.930 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.519 4.519 19 H 0.064 0.936 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.954 3.046 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.271 1.271 26 H 0.051 0.949 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.410 0.590 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 20.339 6.658 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.837 5.837 3 C 0.033 3.967 4 C -0.131 4.131 5 C -0.100 4.100 6 C -0.174 4.174 7 C 0.054 3.946 8 O -0.325 6.325 9 C -0.187 4.187 10 C -0.121 4.121 11 S 2.703 3.297 12 O -0.969 6.969 13 O -0.984 6.984 14 C -0.718 4.718 15 C 0.068 3.932 16 C -0.216 4.216 17 C -0.218 4.218 18 C -0.558 4.558 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.780 3.220 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.148 0.852 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.269 0.731 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.256 19.214 7.599 21.899 hybrid contribution 0.735 -0.336 -1.320 1.548 sum -6.521 18.877 6.279 20.935 Atomic orbital electron populations 1.21725 0.77052 1.04731 1.02561 1.57460 1.15978 1.20293 1.89940 1.20467 0.98066 0.85349 0.92860 1.20487 0.95399 0.99152 0.98102 1.21255 0.98348 0.95562 0.94858 1.21657 0.98801 1.02549 0.94438 1.18670 0.94601 0.97032 0.84258 1.84768 1.80009 1.44950 1.22747 1.21600 1.00377 1.00885 0.95866 1.21441 0.98754 0.97830 0.94114 1.05121 0.73235 0.72832 0.78513 1.93469 1.44956 1.83174 1.75254 1.93490 1.65776 1.63461 1.75697 1.30505 1.10329 1.08244 1.22767 1.17902 0.90959 0.87614 0.96734 1.22183 0.99836 1.02466 0.97090 1.22207 0.99381 1.03265 0.96913 1.21297 1.36376 1.06954 0.91223 0.91786 1.25698 0.95177 0.96139 1.01221 1.69946 1.38022 1.12882 1.33896 0.85673 0.78303 0.77338 0.80682 1.19552 1.21399 1.19662 0.93037 0.86957 0.91345 0.89313 0.85249 0.82405 0.83280 0.73098 0.85403 0.85486 0.84869 0.84435 0.94779 0.91320 0.93979 0.94247 0.91136 0.95130 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.63 10.24 127.77 1.31 2.94 16 2 N -1.00 -25.03 3.10 -543.20 -1.68 -26.71 16 3 C 0.16 3.16 5.43 85.63 0.47 3.63 16 4 C -0.13 -2.94 5.46 -19.85 -0.11 -3.05 16 5 C -0.08 -1.45 9.69 22.26 0.22 -1.23 16 6 C -0.16 -2.87 9.99 22.37 0.22 -2.64 16 7 C 0.10 2.16 6.71 22.51 0.15 2.31 16 8 O -0.51 -9.52 13.50 -92.43 -1.25 -10.77 16 9 C -0.17 -4.26 9.99 22.36 0.22 -4.04 16 10 C -0.10 -2.81 9.11 22.25 0.20 -2.61 16 11 S 2.60 93.67 4.36 -56.49 -0.25 93.42 16 12 O -0.98 -38.78 12.43 -127.65 -1.59 -40.37 16 13 O -0.99 -42.08 14.71 -127.65 -1.88 -43.96 16 14 C -0.59 -21.75 5.12 71.98 0.37 -21.38 16 15 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 16 C -0.16 -7.79 7.77 71.98 0.56 -7.23 16 17 C -0.16 -8.03 7.78 71.98 0.56 -7.47 16 18 C -0.52 -26.91 8.01 25.60 0.21 -26.71 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 20 C 0.02 0.90 5.15 84.66 0.44 1.34 16 21 N -0.91 -50.55 9.35 21.45 0.20 -50.34 16 22 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.11 1.20 7.94 -2.38 -0.02 1.18 16 28 H 0.07 1.40 7.79 -2.39 -0.02 1.38 16 29 H 0.09 1.85 7.55 -2.39 -0.02 1.83 16 30 H 0.13 1.48 7.90 -2.39 -0.02 1.46 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.41 3.22 9.06 -74.06 -0.67 2.54 16 34 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.13 3.96 6.47 -2.91 -0.02 3.94 16 36 H 0.13 4.42 8.14 -2.39 -0.02 4.40 16 37 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 38 H 0.03 1.60 5.46 -2.39 -0.01 1.59 16 39 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 40 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 43 H 0.03 1.47 5.47 -2.39 -0.01 1.46 16 44 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -72.41 360.00 0.71 -71.70 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.34 Total: 25.94 kcal Atomic # 6 Polarization: -67.60 SS G_CDS: 4.78 Total: -62.82 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.48 Total: -77.06 kcal Atomic # 8 Polarization: -90.38 SS G_CDS: -4.71 Total: -95.09 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 93.67 SS G_CDS: -0.25 Total: 93.42 kcal Total: -72.41 0.71 -71.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295523206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.918 kcal (2) G-P(sol) polarization free energy of solvation -72.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds