Wall clock time and date at job start Tue Mar 31 2020 15:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47209 * 2 1 4 4 C 1.50693 * 109.47095 * 239.99506 * 2 1 3 5 5 H 1.07999 * 120.00089 * 240.00223 * 4 2 1 6 6 C 1.37875 * 120.00118 * 60.00831 * 4 2 1 7 7 N 1.31511 * 119.99969 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47210 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47253 * 119.99824 * 8 6 4 11 11 H 1.48501 * 109.47069 * 239.99581 * 8 6 4 12 12 C 1.53006 * 109.46388 * 119.99641 * 2 1 3 13 13 S 1.81394 * 109.47395 * 299.99930 * 12 2 1 14 14 O 1.42096 * 110.54489 * 68.37731 * 13 12 2 15 15 O 1.42098 * 110.54470 * 291.62436 * 13 12 2 16 16 N 1.65609 * 104.44867 * 180.02562 * 13 12 2 17 17 C 1.46489 * 119.99943 * 64.99775 * 16 13 12 18 18 C 1.50709 * 109.46897 * 165.00102 * 17 16 13 19 19 C 1.38261 * 119.99974 * 269.97622 * 18 17 16 20 20 C 1.38202 * 119.99866 * 179.97438 * 19 18 17 21 21 C 1.38262 * 120.00321 * 359.86160 * 20 19 18 22 22 C 1.38217 * 119.99351 * 0.39649 * 21 20 19 23 23 C 1.50699 * 119.99610 * 179.81235 * 22 21 20 24 24 O 1.42903 * 109.47152 * 269.72650 * 23 22 21 25 25 C 1.38205 * 119.99957 * 90.00220 * 18 17 16 26 26 H 1.08994 * 109.47234 * 300.00707 * 1 2 3 27 27 H 1.09007 * 109.46568 * 60.00259 * 1 2 3 28 28 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46793 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47398 * 299.99618 * 3 2 1 31 31 H 1.09002 * 109.47557 * 59.99832 * 3 2 1 32 32 H 0.97001 * 120.00476 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.46772 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47064 * 60.00495 * 12 2 1 35 35 H 0.96998 * 119.99354 * 244.99935 * 16 13 12 36 36 H 1.08998 * 109.47666 * 45.00399 * 17 16 13 37 37 H 1.09001 * 109.47866 * 284.99659 * 17 16 13 38 38 H 1.07998 * 119.99661 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.00186 * 180.02562 * 20 19 18 40 40 H 1.07994 * 120.00185 * 180.20210 * 21 20 19 41 41 H 1.08997 * 109.47198 * 149.72328 * 23 22 21 42 42 H 1.09008 * 109.47393 * 29.72044 * 23 22 21 43 43 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.00366 * 359.97350 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9431 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1484 -2.2859 -3.6035 10 1 1.1680 -1.5867 -4.8164 11 1 3.1475 -0.1860 -4.8159 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0181 2.8544 15 8 2.0478 1.4101 2.8545 16 7 2.0538 -0.7400 3.9938 17 6 3.5022 -0.7964 4.2056 18 6 3.7875 -1.3242 5.5881 19 6 3.8994 -0.4491 6.6527 20 6 4.1605 -0.9332 7.9205 21 6 4.3070 -2.2928 8.1249 22 6 4.2005 -3.1671 7.0597 23 6 4.3643 -4.6486 7.2816 24 8 5.7387 -5.0052 7.1206 25 6 3.9379 -2.6829 5.7916 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.7085 1.1608 -3.4844 33 1 3.1299 -0.7217 1.2492 34 1 1.6765 -1.7489 1.2494 35 1 1.4571 -1.2145 4.5934 36 1 3.9235 0.2038 4.1045 37 1 3.9525 -1.4569 3.4645 38 1 3.7820 0.6126 6.4936 39 1 4.2475 -0.2498 8.7522 40 1 4.5078 -2.6713 9.1162 41 1 3.7601 -5.1936 6.5564 42 1 4.0388 -4.9031 8.2903 43 1 5.9185 -5.9467 7.2491 44 1 3.8505 -3.3665 4.9600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295622647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:07 Heat of formation + Delta-G solvation = -102.977661 kcal Electronic energy + Delta-G solvation = -25877.052320 eV Core-core repulsion = 22114.363348 eV Total energy + Delta-G solvation = -3762.688972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.84208 -37.11260 -36.54015 -36.27387 -35.41138 -35.16657 -31.89277 -31.67064 -31.10542 -26.64388 -26.32705 -25.81354 -25.71198 -25.21811 -22.32471 -20.97298 -19.61384 -18.76844 -17.80811 -17.41853 -16.86760 -16.13809 -16.05568 -15.87675 -15.33672 -15.15747 -14.74119 -14.50352 -14.33520 -13.89425 -13.43112 -13.30709 -13.01352 -12.87546 -12.83067 -12.50976 -12.40469 -12.07450 -11.90243 -11.43998 -11.30064 -11.16009 -11.08062 -11.03874 -10.91613 -10.70599 -10.44803 -10.36462 -10.27901 -10.11823 -9.66366 -9.64413 -9.27728 -9.10909 -9.02437 -8.66228 -8.40798 -6.03859 -4.15846 0.76664 1.05595 1.16525 3.16138 3.24728 3.33253 3.35778 3.51598 4.10597 4.28224 4.36843 4.41984 4.59656 4.67168 4.79725 4.85857 4.91856 5.02120 5.18593 5.21516 5.25024 5.32126 5.43821 5.65258 5.69551 5.75214 5.82380 5.94588 6.20336 6.28354 6.37241 6.38375 6.70335 6.72475 6.79805 6.90840 7.02197 7.12761 7.22821 7.31734 7.50497 7.67752 7.98215 8.09613 8.32788 8.82992 9.49724 10.97484 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.002962 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.173406 B = 9449.403901 C =10463.240434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.582 4.582 13 S 2.593 3.407 14 O -0.964 6.964 15 O -0.964 6.964 16 N -1.127 6.127 17 C 0.155 3.845 18 C -0.096 4.096 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.096 4.096 22 C -0.099 4.099 23 C 0.117 3.883 24 O -0.567 6.567 25 C -0.083 4.083 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.262 0.738 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.380 0.620 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -8.856 19.905 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.954 6.954 16 N -0.884 5.884 17 C 0.029 3.971 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.143 4.143 21 C -0.115 4.115 22 C -0.099 4.099 23 C 0.040 3.960 24 O -0.373 6.373 25 C -0.102 4.102 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.245 0.755 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.227 0.773 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.096 -7.205 19.634 21.784 hybrid contribution 0.404 -1.870 -0.725 2.046 sum 6.500 -9.074 18.909 21.958 Atomic orbital electron populations 1.22279 0.96932 1.00640 1.02340 1.17931 0.92821 0.92220 0.89066 1.22278 0.99719 0.97800 1.02374 1.20988 1.31653 1.12071 0.89407 0.92244 1.24941 0.94898 0.94984 0.98951 1.69810 1.36341 1.22631 1.23370 0.86480 0.78630 0.79621 0.82910 1.19836 1.20967 1.20950 1.30531 1.11264 1.12907 1.16892 1.05624 0.74390 0.75240 0.75596 1.93554 1.29478 1.86666 1.85756 1.93536 1.78127 1.38202 1.85511 1.55923 1.13478 1.71321 1.47641 1.20182 0.81047 1.02249 0.93581 1.19853 1.01122 0.93460 0.95287 1.21236 0.97563 1.00165 0.92267 1.21151 1.00590 0.95345 0.97205 1.21060 0.98608 0.93277 0.98538 1.19582 1.02002 0.94552 0.93780 1.20976 0.83240 0.91776 1.00007 1.86579 1.25635 1.30443 1.94676 1.21017 0.97813 0.94866 0.96486 0.95353 0.88641 0.94472 0.94458 0.88664 0.95291 0.92798 0.86426 0.86237 0.75509 0.89216 0.90782 0.85329 0.85660 0.86056 0.92571 0.92789 0.77296 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.02 7.77 37.15 0.29 -3.73 16 4 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -24.09 9.35 55.43 0.52 -23.57 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.58 -11.15 5.01 37.16 0.19 -10.97 16 13 S 2.59 47.30 4.49 -107.50 -0.48 46.81 16 14 O -0.96 -20.14 15.70 -57.54 -0.90 -21.04 16 15 O -0.96 -19.91 15.12 -57.54 -0.87 -20.78 16 16 N -1.13 -15.24 5.88 -11.66 -0.07 -15.31 16 17 C 0.16 1.85 6.26 -5.20 -0.03 1.82 16 18 C -0.10 -1.06 5.28 -104.62 -0.55 -1.61 16 19 C -0.09 -0.98 9.70 -39.59 -0.38 -1.36 16 20 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 21 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 22 C -0.10 -0.96 5.51 -104.62 -0.58 -1.54 16 23 C 0.12 0.87 7.17 36.01 0.26 1.13 16 24 O -0.57 -4.68 13.64 -35.23 -0.48 -5.16 16 25 C -0.08 -0.86 9.36 -39.59 -0.37 -1.23 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 27 H 0.09 2.53 6.07 -51.92 -0.32 2.22 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 31 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 34 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 35 H 0.41 4.92 8.61 -34.47 -0.30 4.62 16 36 H 0.09 1.09 7.64 -51.93 -0.40 0.69 16 37 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 42 H 0.05 0.31 8.08 -51.92 -0.42 -0.11 16 43 H 0.38 1.25 9.12 45.56 0.42 1.67 16 44 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -33.87 365.84 -9.58 -43.44 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.66 Total: 8.48 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: -2.12 Total: -33.94 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.45 Total: -38.88 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -2.25 Total: -46.99 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 47.30 SS G_CDS: -0.48 Total: 46.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.87 -9.58 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295622647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.535 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds