Wall clock time and date at job start Tue Mar 31 2020 15:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47209 * 2 1 4 4 C 1.50693 * 109.47095 * 239.99506 * 2 1 3 5 5 H 1.07999 * 120.00089 * 240.00223 * 4 2 1 6 6 C 1.37875 * 120.00118 * 60.00831 * 4 2 1 7 7 N 1.31511 * 119.99969 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47210 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47253 * 119.99824 * 8 6 4 11 11 H 1.48501 * 109.47069 * 239.99581 * 8 6 4 12 12 C 1.53006 * 109.46388 * 119.99641 * 2 1 3 13 13 S 1.81394 * 109.47395 * 299.99930 * 12 2 1 14 14 O 1.42096 * 110.54489 * 68.37731 * 13 12 2 15 15 O 1.42098 * 110.54470 * 291.62436 * 13 12 2 16 16 N 1.65609 * 104.44867 * 180.02562 * 13 12 2 17 17 C 1.46489 * 119.99943 * 64.99775 * 16 13 12 18 18 C 1.50709 * 109.46897 * 165.00102 * 17 16 13 19 19 C 1.38261 * 119.99974 * 269.97622 * 18 17 16 20 20 C 1.38202 * 119.99866 * 179.97438 * 19 18 17 21 21 C 1.38262 * 120.00321 * 359.86160 * 20 19 18 22 22 C 1.38217 * 119.99351 * 0.39649 * 21 20 19 23 23 C 1.50699 * 119.99610 * 179.81235 * 22 21 20 24 24 O 1.42903 * 109.47152 * 269.72650 * 23 22 21 25 25 C 1.38205 * 119.99957 * 90.00220 * 18 17 16 26 26 H 1.08994 * 109.47234 * 300.00707 * 1 2 3 27 27 H 1.09007 * 109.46568 * 60.00259 * 1 2 3 28 28 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46793 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47398 * 299.99618 * 3 2 1 31 31 H 1.09002 * 109.47557 * 59.99832 * 3 2 1 32 32 H 0.97001 * 120.00476 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.46772 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47064 * 60.00495 * 12 2 1 35 35 H 0.96998 * 119.99354 * 244.99935 * 16 13 12 36 36 H 1.08998 * 109.47666 * 45.00399 * 17 16 13 37 37 H 1.09001 * 109.47866 * 284.99659 * 17 16 13 38 38 H 1.07998 * 119.99661 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.00186 * 180.02562 * 20 19 18 40 40 H 1.07994 * 120.00185 * 180.20210 * 21 20 19 41 41 H 1.08997 * 109.47198 * 149.72328 * 23 22 21 42 42 H 1.09008 * 109.47393 * 29.72044 * 23 22 21 43 43 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.00366 * 359.97350 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9431 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1484 -2.2859 -3.6035 10 1 1.1680 -1.5867 -4.8164 11 1 3.1475 -0.1860 -4.8159 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0181 2.8544 15 8 2.0478 1.4101 2.8545 16 7 2.0538 -0.7400 3.9938 17 6 3.5022 -0.7964 4.2056 18 6 3.7875 -1.3242 5.5881 19 6 3.8994 -0.4491 6.6527 20 6 4.1605 -0.9332 7.9205 21 6 4.3070 -2.2928 8.1249 22 6 4.2005 -3.1671 7.0597 23 6 4.3643 -4.6486 7.2816 24 8 5.7387 -5.0052 7.1206 25 6 3.9379 -2.6829 5.7916 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.7085 1.1608 -3.4844 33 1 3.1299 -0.7217 1.2492 34 1 1.6765 -1.7489 1.2494 35 1 1.4571 -1.2145 4.5934 36 1 3.9235 0.2038 4.1045 37 1 3.9525 -1.4569 3.4645 38 1 3.7820 0.6126 6.4936 39 1 4.2475 -0.2498 8.7522 40 1 4.5078 -2.6713 9.1162 41 1 3.7601 -5.1936 6.5564 42 1 4.0388 -4.9031 8.2903 43 1 5.9185 -5.9467 7.2491 44 1 3.8505 -3.3665 4.9600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295622647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:06 Heat of formation + Delta-G solvation = -127.813605 kcal Electronic energy + Delta-G solvation = -25878.129287 eV Core-core repulsion = 22114.363348 eV Total energy + Delta-G solvation = -3763.765939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55049 -38.13554 -38.10909 -37.68377 -36.89956 -36.22544 -33.62636 -32.58671 -31.93565 -28.30855 -27.67841 -27.25922 -26.96379 -26.66213 -23.03288 -21.74927 -21.35250 -20.24587 -18.81135 -18.33323 -17.95748 -17.69662 -17.11558 -16.97807 -16.64738 -16.60474 -16.05350 -15.68510 -15.11905 -14.89907 -14.67453 -14.52310 -14.41687 -14.26173 -13.96681 -13.77741 -13.61460 -13.36500 -13.05069 -13.01036 -12.90247 -12.83446 -12.73325 -12.49168 -12.17858 -12.12661 -11.98938 -11.93809 -11.81710 -11.55510 -11.37635 -10.94956 -10.69909 -10.41580 -10.34083 -9.82447 -9.76418 -8.02509 -6.21063 -0.63125 0.29057 0.40670 1.43427 1.46599 1.56049 1.93961 2.44737 2.73777 2.86382 3.19928 3.32330 3.56790 3.64367 3.92179 4.01833 4.12672 4.17681 4.20700 4.32496 4.35125 4.46041 4.55817 4.58389 4.61688 4.75268 4.82603 4.88021 4.90637 5.00845 5.04674 5.10251 5.12452 5.40115 5.48946 5.52111 5.59933 5.62199 5.65822 5.98732 6.02662 6.08012 6.13055 6.35092 6.84293 6.92815 7.47412 8.97516 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.002962 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.173406 B = 9449.403901 C =10463.240434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.586 4.586 13 S 2.615 3.385 14 O -0.993 6.993 15 O -0.990 6.990 16 N -1.109 6.109 17 C 0.148 3.852 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.128 4.128 21 C -0.100 4.100 22 C -0.111 4.111 23 C 0.117 3.883 24 O -0.590 6.590 25 C -0.093 4.093 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.422 0.578 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.399 0.601 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 -10.730 21.341 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.719 4.719 13 S 2.712 3.288 14 O -0.983 6.983 15 O -0.980 6.980 16 N -0.870 5.870 17 C 0.022 3.978 18 C -0.109 4.109 19 C -0.128 4.128 20 C -0.146 4.146 21 C -0.118 4.118 22 C -0.111 4.111 23 C 0.039 3.961 24 O -0.400 6.400 25 C -0.112 4.112 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.257 0.743 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.250 0.750 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.265 -9.102 21.072 24.076 hybrid contribution 0.081 -1.315 -1.062 1.693 sum 7.346 -10.417 20.010 23.725 Atomic orbital electron populations 1.22221 0.97855 1.00511 1.01328 1.17919 0.92271 0.92172 0.90928 1.22213 0.99909 0.98367 1.01354 1.21345 1.31543 1.12270 0.90389 0.91755 1.25682 0.95212 0.95662 1.01706 1.69952 1.37251 1.23760 1.23754 0.85558 0.78008 0.78742 0.79615 1.18873 1.21044 1.21022 1.30461 1.12719 1.13444 1.15255 1.04699 0.73440 0.74854 0.75773 1.93507 1.31491 1.87058 1.86260 1.93499 1.78432 1.40074 1.85972 1.55453 1.14628 1.70804 1.46104 1.20402 0.79596 1.02682 0.95078 1.19790 1.02355 0.93968 0.94743 1.21403 0.98202 1.00329 0.92904 1.21429 0.99821 0.96008 0.97317 1.21387 0.97755 0.93216 0.99472 1.19958 1.01444 0.96103 0.93643 1.21040 0.83134 0.90427 1.01451 1.86514 1.26077 1.32512 1.94865 1.21190 0.97990 0.94704 0.97300 0.94902 0.91094 0.94082 0.93972 0.91157 0.94810 0.92969 0.84290 0.84314 0.74293 0.89669 0.88934 0.85277 0.83638 0.84016 0.91613 0.90896 0.75020 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.01 7.77 71.98 0.56 -7.45 16 2 C 0.07 3.30 0.52 -52.93 -0.03 3.28 16 3 C -0.16 -7.93 7.77 71.98 0.56 -7.37 16 4 C -0.52 -26.67 8.01 25.60 0.21 -26.46 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 0.88 5.15 84.65 0.44 1.32 16 7 N -0.91 -50.31 9.35 21.45 0.20 -50.11 16 8 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C -0.59 -21.56 5.01 71.98 0.36 -21.20 16 13 S 2.61 92.86 4.49 -56.49 -0.25 92.61 16 14 O -0.99 -40.90 15.70 -127.65 -2.00 -42.90 16 15 O -0.99 -40.40 15.12 -127.65 -1.93 -42.33 16 16 N -1.11 -28.28 5.88 -190.80 -1.12 -29.41 16 17 C 0.15 3.28 6.26 85.64 0.54 3.82 16 18 C -0.11 -2.20 5.28 -19.86 -0.10 -2.31 16 19 C -0.11 -2.15 9.70 22.27 0.22 -1.94 16 20 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 21 C -0.10 -1.58 9.70 22.27 0.22 -1.37 16 22 C -0.11 -1.92 5.51 -19.87 -0.11 -2.03 16 23 C 0.12 1.44 7.17 71.24 0.51 1.95 16 24 O -0.59 -8.40 13.64 -148.98 -2.03 -10.43 16 25 C -0.09 -1.76 9.36 22.27 0.21 -1.55 16 26 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 27 H 0.07 3.85 6.07 -2.38 -0.01 3.84 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 31 H 0.03 1.59 5.46 -2.39 -0.01 1.57 16 32 H 0.26 13.82 8.31 -92.71 -0.77 13.04 16 33 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 34 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 35 H 0.42 9.38 8.61 -96.75 -0.83 8.55 16 36 H 0.09 1.98 7.64 -2.39 -0.02 1.96 16 37 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 38 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 42 H 0.07 0.60 8.08 -2.38 -0.02 0.59 16 43 H 0.40 1.72 9.12 -74.06 -0.68 1.05 16 44 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -71.83 365.84 -1.81 -73.63 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.48 Total: 28.11 kcal Atomic # 6 Polarization: -66.98 SS G_CDS: 3.79 Total: -63.19 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -0.92 Total: -79.51 kcal Atomic # 8 Polarization: -89.70 SS G_CDS: -5.97 Total: -95.67 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 92.86 SS G_CDS: -0.25 Total: 92.61 kcal Total: -71.83 -1.81 -73.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295622647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.181 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds