Wall clock time and date at job start Tue Mar 31 2020 15:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 C 1.50693 * 109.47386 * 240.00154 * 2 1 3 5 5 H 1.07996 * 120.00022 * 237.69689 * 4 2 1 6 6 C 1.37882 * 120.00315 * 57.69318 * 4 2 1 7 7 N 1.31515 * 119.99519 * 6.57875 * 6 4 2 8 8 Si 1.86792 * 120.00153 * 186.58507 * 6 4 2 9 9 H 1.48503 * 109.47556 * 84.99579 * 8 6 4 10 10 H 1.48507 * 109.47029 * 204.99182 * 8 6 4 11 11 H 1.48498 * 109.47436 * 324.99429 * 8 6 4 12 12 C 1.52993 * 109.47328 * 119.99710 * 2 1 3 13 13 S 1.81406 * 109.47117 * 300.00233 * 12 2 1 14 14 O 1.42098 * 110.54168 * 68.37622 * 13 12 2 15 15 O 1.42093 * 110.54383 * 291.62401 * 13 12 2 16 16 N 1.65606 * 104.44891 * 179.97438 * 13 12 2 17 17 C 1.46497 * 120.00134 * 65.00075 * 16 13 12 18 18 C 1.52990 * 109.47345 * 164.99932 * 17 16 13 19 19 H 1.09006 * 109.47343 * 60.00313 * 18 17 16 20 20 O 1.42900 * 109.47429 * 300.00350 * 18 17 16 21 21 C 1.50695 * 109.47347 * 180.02562 * 18 17 16 22 22 C 1.38232 * 120.00241 * 84.72862 * 21 18 17 23 23 C 1.38237 * 120.00257 * 179.79199 * 22 21 18 24 24 C 1.38238 * 120.00031 * 0.43620 * 23 22 21 25 25 C 1.38237 * 119.99721 * 359.81791 * 24 23 22 26 26 C 1.38235 * 120.00006 * 265.00062 * 21 18 17 27 27 H 1.09001 * 109.47333 * 306.67079 * 1 2 3 28 28 H 1.09005 * 109.47554 * 66.66837 * 1 2 3 29 29 H 1.08996 * 109.47182 * 186.66812 * 1 2 3 30 30 H 1.09002 * 109.47409 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47276 * 299.99803 * 3 2 1 32 32 H 1.09005 * 109.47682 * 59.99798 * 3 2 1 33 33 H 0.97008 * 119.99817 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47552 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.47127 * 59.99880 * 12 2 1 36 36 H 0.96999 * 119.99630 * 245.00317 * 16 13 12 37 37 H 1.09001 * 109.46960 * 285.00522 * 17 16 13 38 38 H 1.09002 * 109.46933 * 44.99398 * 17 16 13 39 39 H 0.96706 * 113.99285 * 299.99518 * 20 18 17 40 40 H 1.07999 * 119.99868 * 359.97438 * 22 21 18 41 41 H 1.08005 * 120.00281 * 180.27445 * 23 22 21 42 42 H 1.07993 * 119.99881 * 179.83511 * 24 23 22 43 43 H 1.07996 * 120.00216 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.00535 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6835 -1.5662 -1.1317 6 6 1.6605 -0.2677 -2.4822 7 7 0.9754 0.8478 -2.6084 8 14 2.1297 -1.2524 -3.9985 9 1 1.1192 -2.3157 -4.2306 10 1 2.1797 -0.3514 -5.1780 11 1 3.4629 -1.8731 -3.7928 12 6 2.0400 -0.7211 1.2492 13 16 1.4353 0.1340 2.7303 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4102 2.8543 16 7 2.0530 -0.7406 3.9936 17 6 3.5013 -0.7979 4.2060 18 6 3.7902 -1.3343 5.6094 19 1 3.3684 -2.3344 5.7101 20 8 3.2002 -0.4685 6.5811 21 6 5.2801 -1.3926 5.8281 22 6 5.9604 -0.2680 6.2560 23 6 7.3265 -0.3227 6.4608 24 6 8.0136 -1.4996 6.2289 25 6 7.3340 -2.6229 5.7959 26 6 5.9673 -2.5693 5.5953 27 1 -0.3634 0.6137 0.8243 28 1 -0.3634 0.4070 -0.9436 29 1 -0.3633 -1.0207 0.1193 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9565 0.8900 33 1 0.7135 1.1591 -3.4891 34 1 3.1299 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2493 36 1 1.4557 -1.2150 4.5929 37 1 3.9514 -1.4584 3.4648 38 1 3.9232 0.2021 4.1052 39 1 3.5294 0.4403 6.5496 40 1 5.4243 0.6526 6.4333 41 1 7.8574 0.5548 6.7994 42 1 9.0811 -1.5416 6.3863 43 1 7.8706 -3.5425 5.6151 44 1 5.4364 -3.4469 5.2572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295792893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:58 Heat of formation + Delta-G solvation = -102.788506 kcal Electronic energy + Delta-G solvation = -26264.459000 eV Core-core repulsion = 22501.778231 eV Total energy + Delta-G solvation = -3762.680769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.97912 -37.52431 -36.51285 -36.28302 -35.30963 -34.43507 -31.88793 -31.68400 -31.14379 -27.78710 -26.63553 -25.72966 -25.24117 -23.74020 -22.86542 -21.38807 -19.61722 -18.80699 -17.96890 -17.41229 -16.59683 -16.16674 -15.95605 -15.61520 -15.36270 -15.11966 -14.74915 -14.54093 -14.41272 -14.02265 -13.66947 -13.22129 -13.06295 -13.01983 -12.80610 -12.52293 -12.07124 -12.02277 -11.83549 -11.52512 -11.42736 -11.26616 -11.20081 -11.04513 -10.95754 -10.72406 -10.40880 -10.37557 -10.31810 -10.11038 -9.68726 -9.64241 -9.29439 -9.20980 -9.04810 -8.71035 -8.39255 -6.05421 -4.16970 0.82676 1.03120 1.10452 3.17169 3.25068 3.32157 3.33467 3.46141 4.15610 4.24921 4.33617 4.39546 4.52769 4.60078 4.72639 4.78613 4.82597 4.92975 5.18431 5.19429 5.24092 5.35156 5.53942 5.63456 5.64922 5.68401 5.74668 5.92462 6.15062 6.21777 6.25305 6.36335 6.67417 6.67655 6.77503 6.90004 7.01740 7.11727 7.29996 7.34179 7.47588 7.66299 7.96556 8.08553 8.32234 8.81311 9.48192 10.95700 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003299 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.089192 B = 8484.769306 C = 9614.320561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.583 4.583 13 S 2.595 3.405 14 O -0.964 6.964 15 O -0.965 6.965 16 N -1.125 6.125 17 C 0.088 3.912 18 C 0.145 3.855 19 H 0.115 0.885 20 O -0.549 6.549 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.108 4.108 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.097 0.903 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.377 0.623 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.989 -5.388 17.069 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.717 4.717 13 S 2.693 3.307 14 O -0.954 6.954 15 O -0.955 6.955 16 N -0.882 5.882 17 C -0.039 4.039 18 C 0.084 3.916 19 H 0.133 0.867 20 O -0.355 6.355 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.248 0.752 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.226 0.774 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.161 -4.915 17.085 20.477 hybrid contribution 0.853 -0.868 -1.101 1.641 sum 11.015 -5.783 15.985 20.255 Atomic orbital electron populations 1.22213 0.96972 0.99698 1.03023 1.17924 0.92735 0.92296 0.89072 1.22310 0.99669 0.97761 1.02413 1.20931 1.30089 1.13790 0.89426 0.92316 1.24940 0.95075 0.94817 0.98897 1.69815 1.38468 1.20155 1.23551 0.86562 0.78850 0.79969 0.82316 1.20536 1.21183 1.20029 1.30546 1.11167 1.12921 1.17033 1.05561 0.74386 0.75195 0.75541 1.93560 1.29447 1.86634 1.85776 1.93529 1.78181 1.38245 1.85549 1.55744 1.13385 1.71488 1.47607 1.21944 0.81519 1.02841 0.97628 1.20988 0.88158 0.95386 0.87083 0.86719 1.86615 1.67695 1.24340 1.56825 1.20473 0.96150 0.94535 1.00668 1.20935 0.94624 0.97870 0.99308 1.21146 0.94236 0.98155 0.99926 1.21211 0.99993 0.93199 0.99352 1.21171 0.94368 0.98656 0.99454 1.21029 0.94575 0.97373 0.99607 0.95487 0.88740 0.94559 0.94557 0.88419 0.95419 0.92701 0.86575 0.86241 0.75194 0.90647 0.89773 0.77415 0.85902 0.85821 0.86015 0.85844 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.58 37.15 0.28 -3.68 16 2 C 0.08 1.97 0.52 -155.67 -0.08 1.89 16 3 C -0.16 -4.02 7.79 37.16 0.29 -3.73 16 4 C -0.50 -13.12 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 6 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 7 N -0.88 -23.99 9.39 55.43 0.52 -23.47 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C -0.58 -11.17 5.01 37.15 0.19 -10.98 16 13 S 2.60 47.29 4.49 -107.50 -0.48 46.81 16 14 O -0.96 -20.24 15.84 -57.54 -0.91 -21.15 16 15 O -0.97 -19.88 15.12 -57.54 -0.87 -20.75 16 16 N -1.12 -14.90 5.75 -10.62 -0.06 -14.96 16 17 C 0.09 0.98 5.78 -4.05 -0.02 0.96 16 18 C 0.14 1.37 3.30 -27.89 -0.09 1.28 16 19 H 0.12 0.97 8.05 -51.93 -0.42 0.55 16 20 O -0.55 -5.68 13.00 -35.23 -0.46 -6.14 16 21 C -0.12 -1.08 5.00 -104.63 -0.52 -1.60 16 22 C -0.11 -0.96 9.33 -39.58 -0.37 -1.32 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.11 -0.92 9.68 -39.58 -0.38 -1.30 16 27 H 0.03 0.63 5.96 -51.93 -0.31 0.32 16 28 H 0.09 2.50 5.99 -51.93 -0.31 2.19 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 2.59 6.01 -51.93 -0.31 2.28 16 32 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.41 4.88 8.62 -34.47 -0.30 4.59 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 39 H 0.38 3.00 7.39 45.56 0.34 3.34 16 40 H 0.12 0.87 6.62 -52.49 -0.35 0.52 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -33.11 362.48 -9.78 -42.90 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.69 Total: 10.10 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: -2.27 Total: -34.28 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.46 Total: -38.43 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.24 Total: -48.03 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.48 Total: 46.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.11 -9.78 -42.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295792893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.892 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds