Wall clock time and date at job start Tue Mar 31 2020 15:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 C 1.50693 * 109.47386 * 240.00154 * 2 1 3 5 5 H 1.07996 * 120.00022 * 237.69689 * 4 2 1 6 6 C 1.37882 * 120.00315 * 57.69318 * 4 2 1 7 7 N 1.31515 * 119.99519 * 6.57875 * 6 4 2 8 8 Si 1.86792 * 120.00153 * 186.58507 * 6 4 2 9 9 H 1.48503 * 109.47556 * 84.99579 * 8 6 4 10 10 H 1.48507 * 109.47029 * 204.99182 * 8 6 4 11 11 H 1.48498 * 109.47436 * 324.99429 * 8 6 4 12 12 C 1.52993 * 109.47328 * 119.99710 * 2 1 3 13 13 S 1.81406 * 109.47117 * 300.00233 * 12 2 1 14 14 O 1.42098 * 110.54168 * 68.37622 * 13 12 2 15 15 O 1.42093 * 110.54383 * 291.62401 * 13 12 2 16 16 N 1.65606 * 104.44891 * 179.97438 * 13 12 2 17 17 C 1.46497 * 120.00134 * 65.00075 * 16 13 12 18 18 C 1.52990 * 109.47345 * 164.99932 * 17 16 13 19 19 H 1.09006 * 109.47343 * 60.00313 * 18 17 16 20 20 O 1.42900 * 109.47429 * 300.00350 * 18 17 16 21 21 C 1.50695 * 109.47347 * 180.02562 * 18 17 16 22 22 C 1.38232 * 120.00241 * 84.72862 * 21 18 17 23 23 C 1.38237 * 120.00257 * 179.79199 * 22 21 18 24 24 C 1.38238 * 120.00031 * 0.43620 * 23 22 21 25 25 C 1.38237 * 119.99721 * 359.81791 * 24 23 22 26 26 C 1.38235 * 120.00006 * 265.00062 * 21 18 17 27 27 H 1.09001 * 109.47333 * 306.67079 * 1 2 3 28 28 H 1.09005 * 109.47554 * 66.66837 * 1 2 3 29 29 H 1.08996 * 109.47182 * 186.66812 * 1 2 3 30 30 H 1.09002 * 109.47409 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47276 * 299.99803 * 3 2 1 32 32 H 1.09005 * 109.47682 * 59.99798 * 3 2 1 33 33 H 0.97008 * 119.99817 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47552 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.47127 * 59.99880 * 12 2 1 36 36 H 0.96999 * 119.99630 * 245.00317 * 16 13 12 37 37 H 1.09001 * 109.46960 * 285.00522 * 17 16 13 38 38 H 1.09002 * 109.46933 * 44.99398 * 17 16 13 39 39 H 0.96706 * 113.99285 * 299.99518 * 20 18 17 40 40 H 1.07999 * 119.99868 * 359.97438 * 22 21 18 41 41 H 1.08005 * 120.00281 * 180.27445 * 23 22 21 42 42 H 1.07993 * 119.99881 * 179.83511 * 24 23 22 43 43 H 1.07996 * 120.00216 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.00535 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6835 -1.5662 -1.1317 6 6 1.6605 -0.2677 -2.4822 7 7 0.9754 0.8478 -2.6084 8 14 2.1297 -1.2524 -3.9985 9 1 1.1192 -2.3157 -4.2306 10 1 2.1797 -0.3514 -5.1780 11 1 3.4629 -1.8731 -3.7928 12 6 2.0400 -0.7211 1.2492 13 16 1.4353 0.1340 2.7303 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4102 2.8543 16 7 2.0530 -0.7406 3.9936 17 6 3.5013 -0.7979 4.2060 18 6 3.7902 -1.3343 5.6094 19 1 3.3684 -2.3344 5.7101 20 8 3.2002 -0.4685 6.5811 21 6 5.2801 -1.3926 5.8281 22 6 5.9604 -0.2680 6.2560 23 6 7.3265 -0.3227 6.4608 24 6 8.0136 -1.4996 6.2289 25 6 7.3340 -2.6229 5.7959 26 6 5.9673 -2.5693 5.5953 27 1 -0.3634 0.6137 0.8243 28 1 -0.3634 0.4070 -0.9436 29 1 -0.3633 -1.0207 0.1193 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9565 0.8900 33 1 0.7135 1.1591 -3.4891 34 1 3.1299 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2493 36 1 1.4557 -1.2150 4.5929 37 1 3.9514 -1.4584 3.4648 38 1 3.9232 0.2021 4.1052 39 1 3.5294 0.4403 6.5496 40 1 5.4243 0.6526 6.4333 41 1 7.8574 0.5548 6.7994 42 1 9.0811 -1.5416 6.3863 43 1 7.8706 -3.5425 5.6151 44 1 5.4364 -3.4469 5.2572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295792893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:57 Heat of formation + Delta-G solvation = -126.519175 kcal Electronic energy + Delta-G solvation = -26265.488039 eV Core-core repulsion = 22501.778231 eV Total energy + Delta-G solvation = -3763.709808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61693 -38.31140 -38.12216 -38.01207 -36.87994 -35.43854 -33.63668 -32.55490 -31.71797 -28.65061 -28.25608 -27.69047 -27.24138 -24.52185 -23.44826 -22.07582 -21.35805 -20.22956 -18.81122 -18.70948 -17.91185 -17.46580 -17.05244 -16.69491 -16.63017 -16.58277 -15.94640 -15.57317 -15.28106 -15.01073 -14.73362 -14.62385 -14.42182 -14.21777 -13.83610 -13.73141 -13.68228 -13.39105 -13.03080 -12.94213 -12.83606 -12.76578 -12.65756 -12.49988 -12.20986 -12.15241 -12.13936 -11.94898 -11.84794 -11.56734 -11.37492 -11.15717 -10.73474 -10.39493 -10.31520 -9.80441 -9.66708 -8.03298 -6.21324 -0.60527 0.39759 0.51636 1.44796 1.46625 1.54384 1.90736 2.44598 2.83493 2.88294 3.18827 3.32352 3.47416 3.64358 3.79334 3.95288 4.03513 4.15949 4.18885 4.22213 4.31768 4.50753 4.58645 4.60517 4.63210 4.81353 4.85955 4.89155 4.94422 4.99773 5.07048 5.09217 5.17427 5.38974 5.49812 5.57250 5.63600 5.64643 5.64988 5.97561 6.09216 6.11872 6.13293 6.34954 6.67840 6.83416 7.46758 8.96417 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003299 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.089192 B = 8484.769306 C = 9614.320561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.267 1.267 12 C -0.587 4.587 13 S 2.616 3.384 14 O -0.994 6.994 15 O -0.991 6.991 16 N -1.107 6.107 17 C 0.078 3.922 18 C 0.153 3.847 19 H 0.127 0.873 20 O -0.563 6.563 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.118 4.118 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.424 0.576 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.385 0.615 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -7.044 17.915 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.719 4.719 13 S 2.713 3.287 14 O -0.984 6.984 15 O -0.981 6.981 16 N -0.869 5.869 17 C -0.048 4.048 18 C 0.092 3.908 19 H 0.145 0.855 20 O -0.370 6.370 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.136 4.136 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.260 0.740 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.235 0.765 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.686 -6.574 17.933 22.391 hybrid contribution 0.441 -0.345 -1.286 1.402 sum 12.127 -6.919 16.646 21.726 Atomic orbital electron populations 1.22160 0.97874 0.99902 1.01724 1.17916 0.92209 0.92212 0.90978 1.22237 0.99782 0.98379 1.01358 1.21291 1.30032 1.13958 0.90374 0.91759 1.25680 0.95259 0.95618 1.01632 1.69959 1.39370 1.21351 1.23883 0.85640 0.78813 0.78559 0.79022 1.20284 1.21422 1.19147 1.30473 1.12564 1.13490 1.15412 1.04649 0.73426 0.74851 0.75765 1.93514 1.31570 1.87050 1.86310 1.93493 1.78472 1.40109 1.86007 1.55239 1.14720 1.70935 1.45981 1.22238 0.79745 1.03286 0.99531 1.20956 0.88603 0.95580 0.85650 0.85524 1.86589 1.68122 1.25158 1.57144 1.20492 0.95854 0.95091 1.01623 1.21186 0.95200 0.98345 0.99519 1.21428 0.94256 0.99029 0.99921 1.21537 1.01098 0.93071 0.98766 1.21479 0.94443 0.99516 0.99152 1.21298 0.95064 0.97715 0.99511 0.95307 0.91165 0.93853 0.94166 0.90942 0.94983 0.92933 0.84507 0.84270 0.73972 0.88816 0.90319 0.76472 0.85008 0.84353 0.84196 0.84053 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.84 7.58 71.98 0.55 -7.30 16 2 C 0.07 3.28 0.52 -52.93 -0.03 3.25 16 3 C -0.16 -7.88 7.79 71.98 0.56 -7.32 16 4 C -0.52 -26.57 8.01 25.60 0.20 -26.36 16 5 H 0.06 3.15 7.75 -2.91 -0.02 3.13 16 6 C 0.02 0.92 5.09 84.66 0.43 1.35 16 7 N -0.91 -50.04 9.39 21.45 0.20 -49.84 16 8 Si 0.95 41.69 29.54 68.60 2.03 43.71 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 12 C -0.59 -21.43 5.01 71.98 0.36 -21.07 16 13 S 2.62 92.12 4.49 -56.49 -0.25 91.87 16 14 O -0.99 -41.00 15.84 -127.65 -2.02 -43.02 16 15 O -0.99 -40.07 15.12 -127.65 -1.93 -42.00 16 16 N -1.11 -27.09 5.75 -187.51 -1.08 -28.17 16 17 C 0.08 1.57 5.78 86.38 0.50 2.07 16 18 C 0.15 2.57 3.30 29.84 0.10 2.67 16 19 H 0.13 1.80 8.05 -2.38 -0.02 1.78 16 20 O -0.56 -10.73 13.00 -148.98 -1.94 -12.67 16 21 C -0.13 -2.14 5.00 -19.87 -0.10 -2.24 16 22 C -0.12 -2.00 9.33 22.27 0.21 -1.79 16 23 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 24 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 25 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.12 -1.75 9.68 22.27 0.22 -1.54 16 27 H 0.03 1.36 5.96 -2.39 -0.01 1.35 16 28 H 0.07 3.79 5.99 -2.38 -0.01 3.78 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 3.93 6.01 -2.38 -0.01 3.91 16 32 H 0.03 1.51 5.46 -2.38 -0.01 1.49 16 33 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 34 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 35 H 0.14 4.48 8.14 -2.39 -0.02 4.47 16 36 H 0.42 9.07 8.62 -96.75 -0.83 8.24 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.69 7.70 -2.39 -0.02 1.68 16 39 H 0.39 5.67 7.39 -74.05 -0.55 5.13 16 40 H 0.13 1.73 6.62 -2.91 -0.02 1.71 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -70.04 362.48 -1.68 -71.72 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.36 Total: 31.36 kcal Atomic # 6 Polarization: -66.63 SS G_CDS: 3.67 Total: -62.96 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -0.88 Total: -78.00 kcal Atomic # 8 Polarization: -91.80 SS G_CDS: -5.89 Total: -97.69 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 92.12 SS G_CDS: -0.25 Total: 91.87 kcal Total: -70.04 -1.68 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295792893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.801 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds