Wall clock time and date at job start Tue Mar 31 2020 14:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47025 * 2 1 4 4 N 1.31844 * 119.65880 * 83.54552 * 3 2 1 5 5 C 1.31848 * 121.78224 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.55344 * 179.97438 * 5 4 3 7 7 C 1.38249 * 120.88283 * 0.27317 * 5 4 3 8 8 C 1.38534 * 119.22324 * 359.45810 * 7 5 4 9 9 C 1.38701 * 119.66102 * 263.51925 * 3 2 1 10 10 O 1.35915 * 120.46961 * 0.02562 * 9 3 2 11 11 S 1.52196 * 113.99987 * 261.74480 * 10 9 3 12 12 O 1.42099 * 104.27663 * 190.27352 * 11 10 9 13 13 O 1.42098 * 104.27811 * 318.13130 * 11 10 9 14 14 C 1.81398 * 104.45184 * 74.20413 * 11 10 9 15 15 C 1.53000 * 109.47644 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.46551 * 299.99680 * 15 14 11 17 17 C 1.52997 * 109.47097 * 59.99241 * 15 14 11 18 18 C 1.50701 * 109.47332 * 180.02562 * 15 14 11 19 19 H 1.07993 * 120.00194 * 359.97438 * 18 15 14 20 20 C 1.37872 * 119.99694 * 179.97438 * 18 15 14 21 21 N 1.31518 * 120.00516 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 119.99721 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46728 * 90.00210 * 22 20 18 24 24 H 1.48498 * 109.46950 * 209.99671 * 22 20 18 25 25 H 1.48492 * 109.47061 * 330.00215 * 22 20 18 26 26 H 1.08995 * 109.46572 * 57.31594 * 1 2 3 27 27 H 1.09000 * 109.46728 * 177.31544 * 1 2 3 28 28 H 1.09002 * 109.46987 * 297.31514 * 1 2 3 29 29 H 1.09000 * 109.47050 * 239.99935 * 2 1 3 30 30 H 1.09005 * 109.46801 * 119.99908 * 2 1 3 31 31 H 1.09005 * 109.46872 * 90.00661 * 6 5 4 32 32 H 1.09006 * 109.46719 * 209.99818 * 6 5 4 33 33 H 1.08996 * 109.47601 * 329.99813 * 6 5 4 34 34 H 1.08005 * 120.38758 * 179.72231 * 7 5 4 35 35 H 1.08003 * 120.81172 * 180.26335 * 8 7 5 36 36 H 1.09008 * 109.47031 * 299.99819 * 14 11 10 37 37 H 1.08998 * 109.47159 * 59.99359 * 14 11 10 38 38 H 1.09001 * 109.47251 * 60.00172 * 16 15 14 39 39 H 1.09007 * 109.47020 * 179.97438 * 16 15 14 40 40 H 1.09003 * 109.47338 * 299.99948 * 16 15 14 41 41 H 1.08998 * 109.46804 * 60.00981 * 17 15 14 42 42 H 1.09008 * 109.46842 * 180.02562 * 17 15 14 43 43 H 1.08991 * 109.47475 * 300.00419 * 17 15 14 44 44 H 0.96995 * 119.99971 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1284 2.0788 1.1384 5 6 2.5628 3.3227 1.1870 6 6 2.6519 4.0276 2.5160 7 6 2.9319 3.9910 0.0345 8 6 2.8521 3.3347 -1.1829 9 6 2.3894 2.0226 -1.1976 10 8 2.2887 1.3403 -2.3687 11 16 3.6000 0.7327 -2.8459 12 8 3.3224 0.2948 -4.1689 13 8 4.5662 1.7444 -2.5966 14 6 3.8671 -0.6868 -1.7485 15 6 5.1712 -1.3893 -2.1314 16 6 5.0830 -1.8740 -3.5799 17 6 6.3382 -0.4098 -1.9916 18 6 5.3927 -2.5690 -1.2201 19 1 4.6754 -2.7948 -0.4451 20 6 6.5112 -3.3599 -1.3759 21 7 7.3846 -3.0852 -2.3201 22 14 6.7862 -4.8217 -0.2458 23 1 6.1550 -6.0294 -0.8363 24 1 8.2438 -5.0544 -0.0832 25 1 6.1782 -4.5436 1.0801 26 1 -0.3632 0.5549 -0.8649 27 1 -0.3633 -1.0266 -0.0481 28 1 -0.3633 0.4716 0.9131 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.6360 3.8568 2.9526 32 1 2.4994 5.0971 2.3710 33 1 1.8848 3.6388 3.1857 34 1 3.2825 5.0114 0.0830 35 1 3.1379 3.8308 -2.0987 36 1 3.9304 -0.3414 -0.7165 37 1 3.0354 -1.3843 -1.8478 38 1 4.9225 -1.0211 -4.2394 39 1 6.0122 -2.3742 -3.8530 40 1 4.2515 -2.5718 -3.6796 41 1 6.4011 -0.0646 -0.9597 42 1 7.2673 -0.9103 -2.2649 43 1 6.1778 0.4430 -2.6510 44 1 8.1713 -3.6419 -2.4299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296188013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:53 Heat of formation + Delta-G solvation = -95.577394 kcal Electronic energy + Delta-G solvation = -27765.742725 eV Core-core repulsion = 24003.374653 eV Total energy + Delta-G solvation = -3762.368072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.64605 -40.28289 -38.40584 -38.25305 -37.25299 -35.66797 -33.66979 -33.46939 -31.97598 -28.74742 -28.38983 -27.73741 -27.27244 -25.68323 -24.11716 -22.72385 -21.96949 -21.16347 -19.66674 -18.92958 -18.58045 -17.97513 -17.16906 -16.87022 -16.79685 -16.43371 -15.72142 -15.25505 -15.12234 -15.03220 -14.83799 -14.74592 -14.48342 -14.18929 -14.06239 -13.96644 -13.75614 -13.44899 -13.29252 -13.08567 -12.99087 -12.93137 -12.88699 -12.75552 -12.62863 -12.41675 -12.26263 -12.19200 -12.15966 -11.81268 -11.61816 -11.40777 -10.98887 -10.70824 -10.65555 -10.42671 -9.91265 -8.04282 -6.22429 -1.11052 -0.17797 0.01441 1.04522 1.44303 1.46436 1.54736 2.39090 2.42071 2.51222 2.84503 2.97496 3.18961 3.28063 3.59147 3.63384 3.79024 3.86690 3.96271 4.19308 4.27390 4.29309 4.47364 4.51242 4.66093 4.70960 4.77383 4.80530 4.82206 4.85703 4.91092 4.94694 4.99112 5.03509 5.12439 5.16712 5.26764 5.32769 5.46757 5.54079 5.63602 5.93486 6.07123 6.31089 6.70248 6.81265 7.45831 8.96081 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.004791 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.290305 B = 5842.290033 C = 6456.740442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.145 3.855 4 N -0.479 5.479 5 C 0.140 3.860 6 C -0.103 4.103 7 C -0.157 4.157 8 C -0.057 4.057 9 C -0.027 4.027 10 O -0.659 6.659 11 S 2.587 3.413 12 O -0.962 6.962 13 O -0.973 6.973 14 C -0.605 4.605 15 C 0.075 3.925 16 C -0.162 4.162 17 C -0.159 4.159 18 C -0.515 4.515 19 H 0.065 0.935 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.268 1.268 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.189 0.811 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 13.606 8.620 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.005 3.995 4 N -0.191 5.191 5 C 0.002 3.998 6 C -0.160 4.160 7 C -0.177 4.177 8 C -0.084 4.084 9 C -0.071 4.071 10 O -0.617 6.617 11 S 2.688 3.312 12 O -0.960 6.960 13 O -0.971 6.971 14 C -0.735 4.735 15 C 0.074 3.926 16 C -0.220 4.220 17 C -0.216 4.216 18 C -0.554 4.554 19 H 0.083 0.917 20 C -0.179 4.179 21 N -0.546 5.546 22 Si 0.780 3.220 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.192 1.192 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.207 0.793 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.806 13.605 8.609 19.965 hybrid contribution 0.789 -1.157 -0.561 1.509 sum -11.016 12.448 8.048 18.469 Atomic orbital electron populations 1.21675 0.91709 1.03675 1.02489 1.21079 0.99104 0.89259 1.04950 1.21673 0.93514 0.97911 0.86450 1.67595 1.15592 1.09745 1.26205 1.22301 0.89999 0.89247 0.98240 1.20930 1.04493 1.00702 0.89900 1.22380 1.01409 1.03753 0.90122 1.22214 0.92517 0.91673 1.02011 1.19290 1.11615 0.94136 0.82047 1.85708 1.60133 1.71838 1.43982 1.05702 0.72441 0.76921 0.76127 1.93548 1.82937 1.83417 1.36111 1.93536 1.61666 1.55791 1.86133 1.30884 1.09629 1.17579 1.15391 1.17900 0.86736 0.93933 0.94061 1.22243 1.03065 1.00203 0.96513 1.22196 1.02960 0.96968 0.99525 1.21235 1.07330 1.10824 1.16026 0.91713 1.25639 0.95703 0.99914 0.96662 1.69929 1.12048 1.39610 1.32985 0.85620 0.77028 0.79825 0.79541 1.20333 1.21283 1.19214 0.92812 0.89801 0.91394 0.90244 0.87927 0.88777 0.87207 0.89876 0.79331 0.82329 0.84777 0.83503 0.95182 0.90535 0.93838 0.94282 0.90692 0.94795 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 71.98 0.71 -2.21 16 2 C -0.11 -2.77 5.09 29.85 0.15 -2.62 16 3 C 0.14 4.15 5.43 42.67 0.23 4.38 16 4 N -0.48 -12.47 10.18 -171.71 -1.75 -14.21 16 5 C 0.14 2.87 6.78 42.56 0.29 3.15 16 6 C -0.10 -1.19 10.17 71.24 0.72 -0.46 16 7 C -0.16 -3.04 9.73 22.34 0.22 -2.82 16 8 C -0.06 -1.49 8.72 22.56 0.20 -1.30 16 9 C -0.03 -0.82 4.90 22.60 0.11 -0.71 16 10 O -0.66 -22.46 9.21 -61.68 -0.57 -23.03 16 11 S 2.59 101.95 4.20 -56.49 -0.24 101.72 16 12 O -0.96 -43.00 15.72 -118.57 -1.86 -44.86 16 13 O -0.97 -40.08 13.43 -118.57 -1.59 -41.67 16 14 C -0.60 -23.83 3.00 71.98 0.22 -23.61 16 15 C 0.08 3.64 0.52 -52.93 -0.03 3.61 16 16 C -0.16 -8.08 7.77 71.98 0.56 -7.52 16 17 C -0.16 -7.82 7.78 71.98 0.56 -7.26 16 18 C -0.52 -26.50 8.01 25.60 0.21 -26.29 16 19 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 20 C 0.02 1.07 5.15 84.65 0.44 1.50 16 21 N -0.91 -49.63 9.35 21.45 0.20 -49.43 16 22 Si 0.95 41.75 29.54 68.60 2.03 43.78 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 2.17 3.76 -2.39 -0.01 2.16 16 30 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.11 0.60 8.07 -2.38 -0.02 0.58 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.16 3.80 7.93 -2.91 -0.02 3.78 16 36 H 0.13 4.88 6.57 -2.39 -0.02 4.87 16 37 H 0.15 5.14 6.83 -2.39 -0.02 5.12 16 38 H 0.03 1.43 5.47 -2.39 -0.01 1.41 16 39 H 0.08 4.12 6.07 -2.38 -0.01 4.10 16 40 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 4.02 6.07 -2.38 -0.01 4.00 16 43 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 44 H 0.26 13.74 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -67.53 351.36 1.81 -65.72 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 1.01 Total: 24.15 kcal Atomic # 6 Polarization: -66.74 SS G_CDS: 4.58 Total: -62.16 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -1.55 Total: -63.64 kcal Atomic # 8 Polarization: -105.53 SS G_CDS: -4.02 Total: -109.56 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 101.95 SS G_CDS: -0.24 Total: 101.72 kcal Total: -67.53 1.81 -65.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296188013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.860 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds