Wall clock time and date at job start Tue Mar 31 2020 15:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00214 * 2 1 4 4 C 1.39945 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.38861 * 120.01686 * 173.99448 * 4 2 1 6 6 C 1.38107 * 119.97584 * 179.79379 * 5 4 2 7 7 C 1.38701 * 120.02415 * 0.46490 * 6 5 4 8 8 O 1.35995 * 119.98276 * 179.76639 * 7 6 5 9 9 S 1.52200 * 114.00331 * 270.02077 * 8 7 6 10 10 O 1.42103 * 104.27998 * 191.07195 * 9 8 7 11 11 O 1.42098 * 104.27624 * 318.93149 * 9 8 7 12 12 C 1.81396 * 104.45017 * 75.00108 * 9 8 7 13 13 C 1.52996 * 109.47294 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.47431 * 300.00040 * 13 12 9 15 15 C 1.52999 * 109.47083 * 60.00505 * 13 12 9 16 16 C 1.50705 * 109.47219 * 180.02562 * 13 12 9 17 17 H 1.08004 * 119.99670 * 359.97438 * 16 13 12 18 18 C 1.37870 * 120.00260 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00049 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00212 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46954 * 90.00012 * 20 18 16 22 22 H 1.48499 * 109.47206 * 209.99500 * 20 18 16 23 23 H 1.48497 * 109.46928 * 330.00016 * 20 18 16 24 24 C 1.38708 * 120.03301 * 359.78779 * 7 6 5 25 25 C 1.38106 * 120.01800 * 359.97438 * 24 7 6 26 26 H 1.09000 * 109.47288 * 269.99870 * 1 2 3 27 27 H 1.09002 * 109.46980 * 30.00154 * 1 2 3 28 28 H 1.09002 * 109.47114 * 149.99654 * 1 2 3 29 29 H 1.08998 * 109.47453 * 185.03599 * 3 2 1 30 30 H 1.08994 * 109.47011 * 305.03908 * 3 2 1 31 31 H 1.09005 * 109.46728 * 65.03648 * 3 2 1 32 32 H 1.07998 * 120.01530 * 0.02562 * 5 4 2 33 33 H 1.08010 * 119.99123 * 180.20600 * 6 5 4 34 34 H 1.08999 * 109.47198 * 300.00375 * 12 9 8 35 35 H 1.09003 * 109.47135 * 60.00002 * 12 9 8 36 36 H 1.09003 * 109.46980 * 59.99782 * 14 13 12 37 37 H 1.08997 * 109.47365 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.46835 * 300.00015 * 14 13 12 39 39 H 1.08997 * 109.47702 * 59.99457 * 15 13 12 40 40 H 1.08996 * 109.47276 * 180.02562 * 15 13 12 41 41 H 1.09003 * 109.46654 * 299.99806 * 15 13 12 42 42 H 0.96997 * 120.00608 * 180.02562 * 19 18 16 43 43 H 1.08000 * 119.98368 * 179.97438 * 24 7 6 44 44 H 1.08000 * 120.00341 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1647 -1.2120 0.0005 5 6 3.5476 -1.2157 -0.1253 6 6 4.2377 -2.4120 -0.1203 7 6 3.5491 -3.6099 0.0005 8 8 4.2290 -4.7877 0.0005 9 16 4.4179 -5.3935 -1.3829 10 8 4.8985 -6.7063 -1.1280 11 8 3.1709 -5.1829 -2.0309 12 6 5.7124 -4.3793 -2.1484 13 6 5.9955 -4.8944 -3.5609 14 6 6.4634 -6.3493 -3.4890 15 6 4.7188 -4.8102 -4.3999 16 6 7.0714 -4.0521 -4.1966 17 1 7.5091 -3.2312 -3.6481 18 6 7.4961 -4.3289 -5.4788 19 7 6.9627 -5.3283 -6.1469 20 14 8.8292 -3.2844 -6.2670 21 1 10.1601 -3.8704 -5.9658 22 1 8.6255 -3.2488 -7.7375 23 1 8.7619 -1.9038 -5.7243 24 6 2.1672 -3.6073 0.1209 25 6 1.4760 -2.4116 0.1211 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 3.2657 1.0716 -0.0902 30 1 1.8683 1.8784 -0.8414 31 1 2.0036 1.8002 0.9317 32 1 4.0837 -0.2833 -0.2231 33 1 5.3136 -2.4150 -0.2148 34 1 5.3789 -3.3428 -2.2001 35 1 6.6218 -4.4388 -1.5505 36 1 5.6855 -6.9588 -3.0290 37 1 6.6655 -6.7162 -4.4953 38 1 7.3730 -6.4093 -2.8913 39 1 4.3854 -3.7737 -4.4512 40 1 4.9203 -5.1776 -5.4061 41 1 3.9409 -5.4197 -3.9399 42 1 7.2618 -5.5233 -7.0488 43 1 1.6318 -4.5405 0.2146 44 1 0.4001 -2.4099 0.2145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296912516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:22 Heat of formation + Delta-G solvation = -61.198540 kcal Electronic energy + Delta-G solvation = -26988.509677 eV Core-core repulsion = 23227.632384 eV Total energy + Delta-G solvation = -3760.877293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.78144 -38.92351 -36.57491 -36.27453 -35.79096 -35.32980 -31.72219 -31.42171 -29.59624 -28.49027 -26.73377 -25.68306 -25.22953 -25.05746 -22.72607 -21.93519 -20.10633 -19.33491 -18.02090 -17.51080 -16.93998 -16.73654 -15.96243 -15.51842 -15.35736 -14.96514 -14.83455 -14.55849 -14.32058 -13.85649 -13.29605 -13.08064 -12.94842 -12.86284 -12.65889 -12.53905 -12.46170 -12.29939 -12.19492 -12.07820 -12.03012 -11.44288 -11.12614 -11.06030 -10.91871 -10.81458 -10.68694 -10.36808 -10.25656 -10.06416 -9.91244 -9.62426 -9.47842 -9.12468 -8.67708 -8.38298 -7.49268 -6.01547 -4.13349 0.63586 1.24273 1.45546 2.71583 2.85098 3.26600 3.33764 3.35449 3.60129 4.25256 4.38684 4.55454 4.58924 4.65810 4.79745 4.99998 5.03134 5.10212 5.18147 5.23840 5.25676 5.28571 5.41140 5.45757 5.56239 5.70691 5.79906 5.86608 5.99860 6.25334 6.29526 6.39172 6.66496 6.73490 6.82861 6.93643 6.94243 7.07657 7.19022 7.34717 7.53575 7.69660 8.00871 8.11798 8.35165 8.84770 9.51768 10.99866 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.004138 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.074961 B = 6764.400667 C = 8083.661170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.636 5.636 3 C 0.087 3.913 4 C 0.224 3.776 5 C -0.182 4.182 6 C -0.077 4.077 7 C 0.016 3.984 8 O -0.674 6.674 9 S 2.576 3.424 10 O -0.941 6.941 11 O -0.960 6.960 12 C -0.606 4.606 13 C 0.085 3.915 14 C -0.165 4.165 15 C -0.163 4.163 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.041 4.041 25 C -0.182 4.182 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.027 0.973 37 H 0.096 0.904 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.137 0.863 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 11.759 12.957 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.348 5.348 3 C -0.056 4.056 4 C 0.121 3.879 5 C -0.204 4.204 6 C -0.097 4.097 7 C -0.027 4.027 8 O -0.633 6.633 9 S 2.677 3.323 10 O -0.939 6.939 11 O -0.958 6.958 12 C -0.737 4.737 13 C 0.083 3.917 14 C -0.223 4.223 15 C -0.220 4.220 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.062 4.062 25 C -0.205 4.205 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.046 0.954 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.155 0.845 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.598 11.209 13.075 20.763 hybrid contribution 1.356 0.890 -0.702 1.767 sum -10.242 12.099 12.372 20.109 Atomic orbital electron populations 1.21656 0.79237 1.02988 1.01234 1.46408 1.05178 1.03054 1.80127 1.21750 0.97935 0.84762 1.01124 1.17960 0.91287 0.85904 0.92733 1.20545 0.92183 0.98106 1.09551 1.21161 1.00885 0.90601 0.97082 1.17763 0.90417 0.81088 1.13457 1.85745 1.76397 1.42427 1.58708 1.06093 0.77139 0.76259 0.72845 1.93572 1.82718 1.35236 1.82364 1.93568 1.41369 1.86127 1.74743 1.30783 1.16237 1.14232 1.12460 1.17893 0.95562 0.93775 0.84479 1.22290 0.99147 0.96520 1.04311 1.22260 0.95171 0.99822 1.04773 1.20941 1.19527 1.14459 0.99079 0.92317 1.24931 0.96522 0.95248 0.97016 1.69802 1.42060 1.28507 1.11805 0.86542 0.82023 0.80599 0.78496 1.20654 1.21159 1.20000 1.21010 0.91944 0.99004 0.94254 1.20512 1.00068 0.90060 1.09832 0.93272 0.91397 0.91002 0.90118 0.92359 0.92860 0.84445 0.84032 0.86146 0.85987 0.95411 0.88544 0.94383 0.94494 0.88670 0.95253 0.92767 0.84500 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.10 59.85 0.60 1.21 16 2 N -0.64 -5.72 3.42 -187.49 -0.64 -6.36 16 3 C 0.09 0.58 10.63 59.85 0.64 1.22 16 4 C 0.22 2.58 6.54 -83.69 -0.55 2.03 16 5 C -0.18 -2.13 9.31 -39.40 -0.37 -2.50 16 6 C -0.08 -1.05 8.45 -39.46 -0.33 -1.38 16 7 C 0.02 0.26 4.80 -39.24 -0.19 0.07 16 8 O -0.67 -12.07 10.05 -52.05 -0.52 -12.59 16 9 S 2.58 52.67 4.20 -107.50 -0.45 52.22 16 10 O -0.94 -21.72 15.72 -67.04 -1.05 -22.77 16 11 O -0.96 -20.66 13.88 -67.04 -0.93 -21.59 16 12 C -0.61 -12.39 4.40 37.16 0.16 -12.23 16 13 C 0.08 2.09 0.52 -155.66 -0.08 2.01 16 14 C -0.16 -4.16 7.77 37.16 0.29 -3.87 16 15 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 16 C -0.50 -13.22 8.01 -34.44 -0.28 -13.50 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -24.24 9.35 55.43 0.52 -23.72 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.04 -0.60 9.04 -39.46 -0.36 -0.95 16 25 C -0.18 -2.17 9.16 -39.40 -0.36 -2.53 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 28 H 0.07 0.48 6.46 -51.93 -0.34 0.14 16 29 H 0.08 0.51 5.32 -51.93 -0.28 0.24 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.14 1.25 5.74 -52.49 -0.30 0.95 16 33 H 0.14 1.69 7.49 -52.48 -0.39 1.30 16 34 H 0.12 2.21 6.60 -51.92 -0.34 1.87 16 35 H 0.12 2.26 8.14 -51.92 -0.42 1.84 16 36 H 0.03 0.67 5.47 -51.93 -0.28 0.38 16 37 H 0.10 2.59 6.07 -51.93 -0.32 2.28 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 41 H 0.03 0.69 5.46 -51.93 -0.28 0.41 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.13 1.23 6.31 -52.49 -0.33 0.90 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -32.93 351.13 -9.53 -42.46 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.10 Total: 3.97 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: -0.62 Total: -32.56 kcal Atomic # 7 Polarization: -29.96 SS G_CDS: -0.12 Total: -30.08 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -2.51 Total: -56.95 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.45 Total: 52.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.93 -9.53 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296912516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.740 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds