Wall clock time and date at job start Tue Mar 31 2020 15:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00214 * 2 1 4 4 C 1.39945 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.38861 * 120.01686 * 173.99448 * 4 2 1 6 6 C 1.38107 * 119.97584 * 179.79379 * 5 4 2 7 7 C 1.38701 * 120.02415 * 0.46490 * 6 5 4 8 8 O 1.35995 * 119.98276 * 179.76639 * 7 6 5 9 9 S 1.52200 * 114.00331 * 270.02077 * 8 7 6 10 10 O 1.42103 * 104.27998 * 191.07195 * 9 8 7 11 11 O 1.42098 * 104.27624 * 318.93149 * 9 8 7 12 12 C 1.81396 * 104.45017 * 75.00108 * 9 8 7 13 13 C 1.52996 * 109.47294 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.47431 * 300.00040 * 13 12 9 15 15 C 1.52999 * 109.47083 * 60.00505 * 13 12 9 16 16 C 1.50705 * 109.47219 * 180.02562 * 13 12 9 17 17 H 1.08004 * 119.99670 * 359.97438 * 16 13 12 18 18 C 1.37870 * 120.00260 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00049 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00212 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46954 * 90.00012 * 20 18 16 22 22 H 1.48499 * 109.47206 * 209.99500 * 20 18 16 23 23 H 1.48497 * 109.46928 * 330.00016 * 20 18 16 24 24 C 1.38708 * 120.03301 * 359.78779 * 7 6 5 25 25 C 1.38106 * 120.01800 * 359.97438 * 24 7 6 26 26 H 1.09000 * 109.47288 * 269.99870 * 1 2 3 27 27 H 1.09002 * 109.46980 * 30.00154 * 1 2 3 28 28 H 1.09002 * 109.47114 * 149.99654 * 1 2 3 29 29 H 1.08998 * 109.47453 * 185.03599 * 3 2 1 30 30 H 1.08994 * 109.47011 * 305.03908 * 3 2 1 31 31 H 1.09005 * 109.46728 * 65.03648 * 3 2 1 32 32 H 1.07998 * 120.01530 * 0.02562 * 5 4 2 33 33 H 1.08010 * 119.99123 * 180.20600 * 6 5 4 34 34 H 1.08999 * 109.47198 * 300.00375 * 12 9 8 35 35 H 1.09003 * 109.47135 * 60.00002 * 12 9 8 36 36 H 1.09003 * 109.46980 * 59.99782 * 14 13 12 37 37 H 1.08997 * 109.47365 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.46835 * 300.00015 * 14 13 12 39 39 H 1.08997 * 109.47702 * 59.99457 * 15 13 12 40 40 H 1.08996 * 109.47276 * 180.02562 * 15 13 12 41 41 H 1.09003 * 109.46654 * 299.99806 * 15 13 12 42 42 H 0.96997 * 120.00608 * 180.02562 * 19 18 16 43 43 H 1.08000 * 119.98368 * 179.97438 * 24 7 6 44 44 H 1.08000 * 120.00341 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1647 -1.2120 0.0005 5 6 3.5476 -1.2157 -0.1253 6 6 4.2377 -2.4120 -0.1203 7 6 3.5491 -3.6099 0.0005 8 8 4.2290 -4.7877 0.0005 9 16 4.4179 -5.3935 -1.3829 10 8 4.8985 -6.7063 -1.1280 11 8 3.1709 -5.1829 -2.0309 12 6 5.7124 -4.3793 -2.1484 13 6 5.9955 -4.8944 -3.5609 14 6 6.4634 -6.3493 -3.4890 15 6 4.7188 -4.8102 -4.3999 16 6 7.0714 -4.0521 -4.1966 17 1 7.5091 -3.2312 -3.6481 18 6 7.4961 -4.3289 -5.4788 19 7 6.9627 -5.3283 -6.1469 20 14 8.8292 -3.2844 -6.2670 21 1 10.1601 -3.8704 -5.9658 22 1 8.6255 -3.2488 -7.7375 23 1 8.7619 -1.9038 -5.7243 24 6 2.1672 -3.6073 0.1209 25 6 1.4760 -2.4116 0.1211 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 3.2657 1.0716 -0.0902 30 1 1.8683 1.8784 -0.8414 31 1 2.0036 1.8002 0.9317 32 1 4.0837 -0.2833 -0.2231 33 1 5.3136 -2.4150 -0.2148 34 1 5.3789 -3.3428 -2.2001 35 1 6.6218 -4.4388 -1.5505 36 1 5.6855 -6.9588 -3.0290 37 1 6.6655 -6.7162 -4.4953 38 1 7.3730 -6.4093 -2.8913 39 1 4.3854 -3.7737 -4.4512 40 1 4.9203 -5.1776 -5.4061 41 1 3.9409 -5.4197 -3.9399 42 1 7.2618 -5.5233 -7.0488 43 1 1.6318 -4.5405 0.2146 44 1 0.4001 -2.4099 0.2145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296912516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:21 Heat of formation + Delta-G solvation = -81.415858 kcal Electronic energy + Delta-G solvation = -26989.386366 eV Core-core repulsion = 23227.632384 eV Total energy + Delta-G solvation = -3761.753982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95072 -39.90047 -38.22399 -38.13902 -37.05972 -36.59774 -33.64876 -32.38489 -30.50768 -29.10319 -28.43338 -27.68866 -27.24567 -25.90011 -23.67552 -22.99256 -21.49124 -20.98176 -19.30600 -18.89592 -18.01602 -17.97780 -17.89105 -16.73123 -16.70044 -16.31436 -15.95083 -15.69957 -15.34249 -15.01284 -14.77639 -14.65438 -14.44547 -14.23592 -13.88574 -13.77000 -13.61352 -13.37893 -13.30601 -13.09244 -13.00274 -12.88963 -12.88642 -12.83557 -12.76881 -12.51982 -12.19292 -12.14113 -11.95106 -11.72282 -11.57076 -11.35292 -10.83958 -10.55924 -10.40242 -10.09650 -8.30724 -8.01246 -6.19994 -0.82938 0.28689 0.34525 1.33753 1.45802 1.47282 1.56091 2.15214 2.45466 2.63050 2.69870 3.10208 3.21687 3.70730 3.78272 3.87909 4.03173 4.09815 4.22509 4.29498 4.36031 4.50296 4.58753 4.58841 4.70446 4.80922 4.84181 4.86395 4.88842 4.94588 4.98411 5.01920 5.09028 5.13256 5.28623 5.30232 5.38026 5.51291 5.65511 5.66684 5.97179 6.11263 6.25453 6.34637 6.38210 6.84081 7.48066 8.98904 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.004138 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.074961 B = 6764.400667 C = 8083.661170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.634 5.634 3 C 0.078 3.922 4 C 0.229 3.771 5 C -0.185 4.185 6 C -0.081 4.081 7 C -0.034 4.034 8 O -0.666 6.666 9 S 2.589 3.411 10 O -0.977 6.977 11 O -0.977 6.977 12 C -0.605 4.605 13 C 0.073 3.927 14 C -0.163 4.163 15 C -0.157 4.157 16 C -0.516 4.516 17 H 0.065 0.935 18 C 0.018 3.982 19 N -0.909 5.909 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.056 4.056 25 C -0.187 4.187 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.136 0.864 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 14.923 13.849 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.343 5.343 3 C -0.064 4.064 4 C 0.123 3.877 5 C -0.207 4.207 6 C -0.102 4.102 7 C -0.077 4.077 8 O -0.625 6.625 9 S 2.690 3.310 10 O -0.975 6.975 11 O -0.975 6.975 12 C -0.735 4.735 13 C 0.071 3.929 14 C -0.221 4.221 15 C -0.215 4.215 16 C -0.555 4.555 17 H 0.084 0.916 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.077 4.077 25 C -0.209 4.209 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.154 0.846 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.050 14.395 13.965 23.398 hybrid contribution 1.328 0.103 -0.893 1.603 sum -10.723 14.498 13.072 22.272 Atomic orbital electron populations 1.21880 0.77827 1.03903 1.02352 1.46761 1.06321 1.02908 1.78327 1.21978 0.97990 0.83866 1.02547 1.18179 0.91585 0.86831 0.91109 1.20883 0.92549 0.98488 1.08814 1.21401 1.01716 0.90425 0.96664 1.18227 0.91286 0.80816 1.17406 1.85730 1.76753 1.43678 1.56353 1.05668 0.76563 0.75637 0.73095 1.93513 1.83150 1.37617 1.83203 1.93521 1.42083 1.86219 1.75702 1.30675 1.17409 1.15300 1.10162 1.17891 0.94997 0.93180 0.86793 1.22244 0.99410 0.97454 1.02963 1.22176 0.95700 0.99963 1.03656 1.21277 1.19965 1.14791 0.99444 0.91646 1.25681 0.98495 0.96305 0.97672 1.69946 1.43138 1.29729 1.11917 0.85588 0.79365 0.79485 0.77365 1.20523 1.21296 1.18929 1.21209 0.91742 1.00119 0.94619 1.20766 1.01278 0.89468 1.09388 0.91997 0.89540 0.91131 0.89829 0.91115 0.91240 0.81723 0.82783 0.84055 0.84185 0.95186 0.90677 0.94122 0.94018 0.90950 0.94878 0.92931 0.84612 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.10 127.77 1.29 2.09 16 2 N -0.63 -9.18 3.42 -747.10 -2.55 -11.74 16 3 C 0.08 0.74 10.63 127.77 1.36 2.10 16 4 C 0.23 4.66 6.54 38.14 0.25 4.90 16 5 C -0.19 -3.86 9.31 22.39 0.21 -3.65 16 6 C -0.08 -2.09 8.45 22.35 0.19 -1.90 16 7 C -0.03 -1.06 4.80 22.49 0.11 -0.95 16 8 O -0.67 -23.90 10.05 -62.58 -0.63 -24.53 16 9 S 2.59 106.56 4.20 -56.49 -0.24 106.32 16 10 O -0.98 -46.01 15.72 -118.57 -1.86 -47.88 16 11 O -0.98 -42.51 13.88 -118.57 -1.65 -44.15 16 12 C -0.61 -24.30 4.40 71.98 0.32 -23.98 16 13 C 0.07 3.61 0.52 -52.93 -0.03 3.58 16 14 C -0.16 -8.38 7.77 71.98 0.56 -7.82 16 15 C -0.16 -7.91 7.78 71.98 0.56 -7.35 16 16 C -0.52 -26.92 8.01 25.60 0.21 -26.71 16 17 H 0.07 3.25 7.74 -2.91 -0.02 3.22 16 18 C 0.02 0.94 5.15 84.65 0.44 1.38 16 19 N -0.91 -50.52 9.35 21.44 0.20 -50.32 16 20 Si 0.96 41.96 29.54 68.60 2.03 43.98 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 24 C -0.06 -1.58 9.04 22.35 0.20 -1.38 16 25 C -0.19 -4.12 9.16 22.39 0.21 -3.91 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 0.55 8.07 -2.39 -0.02 0.53 16 28 H 0.07 0.73 6.46 -2.39 -0.02 0.71 16 29 H 0.08 0.75 5.32 -2.39 -0.01 0.73 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.17 2.41 5.74 -2.91 -0.02 2.39 16 33 H 0.15 3.40 7.49 -2.91 -0.02 3.38 16 34 H 0.14 5.00 6.60 -2.39 -0.02 4.98 16 35 H 0.14 5.03 8.14 -2.39 -0.02 5.01 16 36 H 0.03 1.48 5.47 -2.39 -0.01 1.47 16 37 H 0.07 4.15 6.07 -2.39 -0.01 4.14 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 41 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 42 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 44 H 0.16 2.55 6.31 -2.91 -0.02 2.53 16 Total: -1.00 -70.97 351.13 2.17 -68.80 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.01 Total: 23.11 kcal Atomic # 6 Polarization: -69.45 SS G_CDS: 5.86 Total: -63.59 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -2.35 Total: -62.06 kcal Atomic # 8 Polarization: -112.42 SS G_CDS: -4.14 Total: -116.56 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 106.56 SS G_CDS: -0.24 Total: 106.32 kcal Total: -70.97 2.17 -68.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296912516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.618 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds