Wall clock time and date at job start Tue Mar 31 2020 15:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 N 1.46509 * 109.47267 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00111 * 275.00198 * 4 3 2 6 6 H 1.07998 * 119.99852 * 146.58181 * 5 4 3 7 7 C 1.38817 * 119.99901 * 326.58852 * 5 4 3 8 8 N 1.31617 * 119.99847 * 336.09052 * 7 5 4 9 9 Si 1.86794 * 119.99869 * 156.09616 * 7 5 4 10 10 H 1.48503 * 109.47443 * 59.99567 * 9 7 5 11 11 H 1.48502 * 109.47234 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47352 * 299.99656 * 9 7 5 13 13 S 1.65600 * 119.99608 * 94.99788 * 4 3 2 14 14 O 1.42100 * 106.40803 * 341.67760 * 13 4 3 15 15 O 1.42097 * 106.39964 * 208.75471 * 13 4 3 16 16 C 1.76201 * 107.21804 * 95.21773 * 13 4 3 17 17 C 1.38230 * 120.00167 * 269.72726 * 16 13 4 18 18 C 1.38232 * 120.00357 * 179.76560 * 17 16 13 19 19 C 1.38237 * 119.99789 * 0.48184 * 18 17 16 20 20 C 1.50696 * 120.00124 * 179.77221 * 19 18 17 21 21 C 1.53005 * 109.47004 * 270.01889 * 20 19 18 22 22 O 1.42902 * 109.47033 * 179.97438 * 21 20 19 23 23 C 1.42899 * 113.99782 * 179.97438 * 22 21 20 24 24 C 1.38236 * 119.99927 * 359.79017 * 19 18 17 25 25 C 1.38231 * 119.99957 * 359.95815 * 24 19 18 26 26 H 1.08998 * 109.47117 * 299.99960 * 1 2 3 27 27 H 1.08998 * 109.47551 * 59.99886 * 1 2 3 28 28 H 1.09002 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 240.00040 * 2 1 3 30 30 H 1.09001 * 109.47089 * 119.99911 * 2 1 3 31 31 H 1.09003 * 109.47541 * 59.99995 * 3 2 1 32 32 H 1.09004 * 109.47563 * 300.00042 * 3 2 1 33 33 H 0.97003 * 120.00049 * 179.97438 * 8 7 5 34 34 H 1.08002 * 119.99994 * 359.97438 * 17 16 13 35 35 H 1.07997 * 120.00449 * 180.24914 * 18 17 16 36 36 H 1.09002 * 109.47386 * 30.01902 * 20 19 18 37 37 H 1.08999 * 109.47389 * 150.02213 * 20 19 18 38 38 H 1.09002 * 109.47060 * 300.00212 * 21 20 19 39 39 H 1.08999 * 109.46783 * 59.99954 * 21 20 19 40 40 H 1.09009 * 109.47017 * 60.00313 * 23 22 21 41 41 H 1.08997 * 109.47135 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47651 * 300.00740 * 23 22 21 43 43 H 1.08000 * 120.00055 * 179.97438 * 24 19 18 44 44 H 1.08005 * 120.00080 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3393 1.1823 6 1 5.1353 0.8194 1.2148 7 6 3.6667 1.9028 2.3383 8 7 2.8117 2.9000 2.2560 9 14 4.1772 1.2458 4.0107 10 1 5.6461 1.3918 4.1727 11 1 3.4835 2.0126 5.0766 12 1 3.8082 -0.1891 4.1126 13 16 4.3335 1.5672 -1.4278 14 8 3.4140 1.2268 -2.4562 15 8 5.5690 0.8922 -1.2352 16 6 4.7269 3.2696 -1.6556 17 6 3.8516 4.0964 -2.3346 18 6 4.1579 5.4330 -2.5092 19 6 5.3442 5.9406 -2.0133 20 6 5.6806 7.3966 -2.2081 21 6 6.4503 7.5713 -3.5188 22 8 6.7687 8.9521 -3.7038 23 6 7.4925 9.2258 -4.9052 24 6 6.2222 5.1126 -1.3392 25 6 5.9134 3.7772 -1.1602 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.4462 3.2935 3.0638 34 1 2.9268 3.6988 -2.7258 35 1 3.4722 6.0798 -3.0361 36 1 4.7607 7.9801 -2.2464 37 1 6.2955 7.7418 -1.3769 38 1 7.3702 6.9878 -3.4805 39 1 5.8354 7.2261 -4.3500 40 1 6.8997 8.9144 -5.7654 41 1 7.6951 10.2947 -4.9718 42 1 8.4342 8.6770 -4.8952 43 1 7.1492 5.5091 -0.9522 44 1 6.5992 3.1303 -0.6331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299036760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:40 Heat of formation + Delta-G solvation = -105.059836 kcal Electronic energy + Delta-G solvation = -26245.260584 eV Core-core repulsion = 22482.481322 eV Total energy + Delta-G solvation = -3762.779262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.03114 -37.83798 -36.34289 -35.81788 -34.41824 -33.31783 -32.77281 -31.07868 -30.49911 -28.92188 -26.42413 -26.04350 -23.81658 -23.49592 -22.31230 -20.87840 -20.67604 -18.51504 -17.59018 -16.77615 -16.55758 -16.22548 -16.19405 -15.23614 -15.08958 -14.84836 -14.63805 -14.30894 -13.87408 -13.77202 -13.42533 -13.21170 -12.91682 -12.88584 -12.74751 -11.97113 -11.94856 -11.78070 -11.64256 -11.49027 -11.48322 -11.24105 -11.08775 -10.96622 -10.78639 -10.69289 -10.60427 -10.57723 -10.45844 -10.17595 -9.84377 -9.79646 -9.65088 -9.25455 -8.56519 -8.48585 -7.88644 -6.62187 -4.16780 1.37996 1.84863 1.85195 3.08738 3.13104 3.19141 3.54805 3.93184 4.05864 4.49237 4.70001 4.86634 4.98055 5.03713 5.09480 5.11568 5.24154 5.25453 5.36632 5.40119 5.43958 5.56839 5.77520 5.80326 5.84532 5.87689 5.91170 6.00097 6.14594 6.24936 6.28876 6.49619 6.52977 6.60637 6.67866 6.75486 6.83900 6.85694 6.89776 6.95734 7.17201 7.26537 7.41552 7.55349 8.23968 8.64647 9.12431 10.31817 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014836 B = 0.003645 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.805670 B = 7679.641427 C = 8442.347776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.123 3.877 4 N -0.800 5.800 5 C -0.246 4.246 6 H 0.110 0.890 7 C 0.038 3.962 8 N -0.820 5.820 9 Si 0.922 3.078 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.267 1.267 13 S 2.532 3.468 14 O -1.005 7.005 15 O -0.987 6.987 16 C -0.645 4.645 17 C -0.030 4.030 18 C -0.141 4.141 19 C -0.060 4.060 20 C -0.078 4.078 21 C 0.066 3.934 22 O -0.394 6.394 23 C 0.032 3.968 24 C -0.140 4.140 25 C -0.019 4.019 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.276 0.724 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.120 0.880 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 7.166 -5.039 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.623 5.623 5 C -0.394 4.394 6 H 0.127 0.873 7 C -0.176 4.176 8 N -0.458 5.458 9 Si 0.747 3.253 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.192 1.192 13 S 2.634 3.366 14 O -0.995 6.995 15 O -0.977 6.977 16 C -0.724 4.724 17 C -0.049 4.049 18 C -0.160 4.160 19 C -0.060 4.060 20 C -0.115 4.115 21 C -0.010 4.010 22 O -0.313 6.313 23 C -0.065 4.065 24 C -0.159 4.159 25 C -0.038 4.038 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.138 0.862 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.776 6.849 -5.702 9.087 hybrid contribution 0.367 0.594 0.621 0.935 sum 2.143 7.444 -5.081 9.264 Atomic orbital electron populations 1.21669 0.96500 1.00663 1.01391 1.21870 0.94618 0.98989 1.02021 1.21429 0.79639 0.95584 1.03757 1.53744 1.11984 1.76611 1.19918 1.19783 1.07838 1.28303 0.83484 0.87256 1.25769 0.96981 0.93780 1.01030 1.69977 1.27289 1.17822 1.30702 0.86045 0.79484 0.79552 0.80184 1.19153 1.20632 1.19210 1.11057 0.73748 0.76104 0.75733 1.93330 1.63205 1.83822 1.59150 1.93349 1.45348 1.72739 1.86242 1.32277 1.01789 1.31199 1.07147 1.20804 0.97623 0.92890 0.93555 1.21037 0.97055 0.95780 1.02135 1.19702 0.94733 0.94288 0.97297 1.20473 1.01155 0.92877 0.97002 1.22544 0.98714 0.82152 0.97589 1.87850 1.75837 1.25810 1.41840 1.22726 0.95190 1.01695 0.86844 1.21084 0.99580 0.94149 1.01087 1.20858 0.94507 0.94885 0.93583 0.92918 0.93111 0.93448 0.92641 0.91541 0.87416 0.92820 0.91345 0.85360 0.86276 0.90145 0.90110 0.92991 0.93033 0.94103 0.89697 0.94076 0.86203 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.62 6.23 -26.74 -0.17 -2.79 16 3 C 0.12 2.66 4.97 -4.04 -0.02 2.64 16 4 N -0.80 -18.86 2.85 -59.90 -0.17 -19.03 16 5 C -0.25 -5.93 9.17 -15.06 -0.14 -6.07 16 6 H 0.11 2.65 7.45 -52.49 -0.39 2.26 16 7 C 0.04 0.88 4.98 -17.43 -0.09 0.80 16 8 N -0.82 -19.38 11.28 55.49 0.63 -18.76 16 9 Si 0.92 18.09 29.62 -169.99 -5.03 13.05 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 11 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 12 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 13 S 2.53 60.11 5.61 -107.50 -0.60 59.50 16 14 O -1.01 -24.83 16.07 -57.17 -0.92 -25.75 16 15 O -0.99 -25.43 16.28 -57.17 -0.93 -26.36 16 16 C -0.65 -13.96 5.97 -39.58 -0.24 -14.20 16 17 C -0.03 -0.58 9.52 -39.59 -0.38 -0.96 16 18 C -0.14 -2.38 9.70 -39.58 -0.38 -2.77 16 19 C -0.06 -0.96 5.13 -104.63 -0.54 -1.49 16 20 C -0.08 -1.00 5.71 -27.88 -0.16 -1.16 16 21 C 0.07 0.79 5.92 37.16 0.22 1.01 16 22 O -0.39 -4.78 10.70 -35.23 -0.38 -5.16 16 23 C 0.03 0.28 11.01 101.05 1.11 1.39 16 24 C -0.14 -2.41 9.70 -39.58 -0.38 -2.80 16 25 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.11 2.43 5.31 -51.93 -0.28 2.16 16 32 H 0.05 1.13 7.47 -51.93 -0.39 0.74 16 33 H 0.28 6.12 8.31 -40.82 -0.34 5.79 16 34 H 0.13 2.40 7.61 -52.49 -0.40 2.00 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.64 7.62 -52.48 -0.40 2.24 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -29.06 378.67 -9.77 -38.83 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.90 Total: 7.03 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -1.17 Total: -29.06 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.46 Total: -37.79 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -2.23 Total: -57.27 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 60.11 SS G_CDS: -0.60 Total: 59.50 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.06 -9.77 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299036760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.229 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds