Wall clock time and date at job start Tue Mar 31 2020 14:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47207 * 2 1 4 4 C 1.53002 * 109.47259 * 185.00065 * 3 2 1 5 5 C 1.53005 * 109.47236 * 304.99878 * 3 2 1 6 6 N 1.46495 * 109.47368 * 184.99780 * 5 3 2 7 7 S 1.65597 * 119.99998 * 164.99693 * 6 5 3 8 8 O 1.42094 * 106.40487 * 311.46219 * 7 6 5 9 9 O 1.42102 * 106.40225 * 178.53950 * 7 6 5 10 10 C 1.76205 * 107.21756 * 65.00594 * 7 6 5 11 11 C 1.38633 * 119.74672 * 269.72992 * 10 7 6 12 12 C 1.37620 * 120.25148 * 179.72098 * 11 10 7 13 13 C 1.40722 * 119.73748 * 0.56367 * 12 11 10 14 14 C 1.41388 * 120.24014 * 179.68104 * 13 12 11 15 15 H 1.08002 * 120.00247 * 204.40192 * 14 13 12 16 16 C 1.39953 * 120.00239 * 24.40728 * 14 13 12 17 17 N 1.30819 * 119.99488 * 17.85490 * 16 14 13 18 18 Si 1.86803 * 119.99976 * 197.85427 * 16 14 13 19 19 H 1.48498 * 109.46969 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46656 * 119.99850 * 18 16 14 21 21 H 1.48495 * 109.47114 * 239.99788 * 18 16 14 22 22 C 1.40718 * 119.51426 * 359.70992 * 13 12 11 23 23 C 1.37619 * 119.74194 * 359.97438 * 22 13 12 24 24 O 1.42902 * 109.47238 * 64.99652 * 3 2 1 25 25 C 1.42903 * 113.99519 * 60.00375 * 24 3 2 26 26 H 1.08993 * 109.47625 * 299.99924 * 1 2 3 27 27 H 1.09006 * 109.47275 * 60.00488 * 1 2 3 28 28 H 1.09004 * 109.47338 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47238 * 239.99557 * 2 1 3 30 30 H 1.08998 * 109.46883 * 120.00254 * 2 1 3 31 31 H 1.09004 * 109.47381 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.46872 * 299.99746 * 4 3 2 33 33 H 1.08994 * 109.47045 * 59.99881 * 4 3 2 34 34 H 1.09004 * 109.46728 * 65.00013 * 5 3 2 35 35 H 1.09001 * 109.46873 * 305.00408 * 5 3 2 36 36 H 0.96998 * 120.00034 * 345.00072 * 6 5 3 37 37 H 1.08004 * 119.87632 * 359.97072 * 11 10 7 38 38 H 1.07998 * 120.13104 * 180.27575 * 12 11 10 39 39 H 0.97007 * 119.99317 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.12531 * 179.97438 * 22 13 12 41 41 H 1.08005 * 119.87057 * 180.02562 * 23 22 13 42 42 H 1.09000 * 109.47345 * 59.99977 * 25 24 3 43 43 H 1.09003 * 109.46554 * 179.97438 * 25 24 3 44 44 H 1.08999 * 109.46977 * 299.99238 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5648 1.4443 -0.1257 5 6 1.4299 2.1991 -1.1817 6 7 2.0086 3.5431 -1.2521 7 16 1.8260 4.4523 -2.6241 8 8 2.1780 3.6103 -3.7133 9 8 2.4606 5.6976 -2.3677 10 6 0.1065 4.7965 -2.7967 11 6 -0.6998 3.9286 -3.5168 12 6 -2.0451 4.1844 -3.6533 13 6 -2.5992 5.3382 -3.0686 14 6 -3.9787 5.6148 -3.2079 15 1 -4.3369 6.6304 -3.1259 16 6 -4.8803 4.5726 -3.4520 17 7 -4.5308 3.3354 -3.2099 18 14 -6.5826 4.9481 -4.1234 19 1 -6.7286 6.4140 -4.3105 20 1 -6.7621 4.2627 -5.4285 21 1 -7.6099 4.4660 -3.1656 22 6 -1.7701 6.2150 -2.3447 23 6 -0.4287 5.9357 -2.2157 24 8 1.6619 2.0814 1.2210 25 6 2.1824 1.4501 2.3927 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 3.9282 2.4719 -0.1253 32 1 3.9994 0.9053 0.7161 33 1 3.8531 0.9570 -1.0571 34 1 0.3509 2.2747 -1.0466 35 1 1.6437 1.6625 -2.1060 36 1 2.4987 3.9004 -0.4952 37 1 -0.2714 3.0463 -3.9690 38 1 -2.6723 3.5046 -4.2110 39 1 -5.1559 2.6130 -3.3788 40 1 -2.1848 7.1035 -1.8923 41 1 0.2095 6.6070 -1.6602 42 1 3.2716 1.4516 2.3527 43 1 1.8508 1.9950 3.2766 44 1 1.8219 0.4227 2.4423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323260611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:51 Heat of formation + Delta-G solvation = -118.191738 kcal Electronic energy + Delta-G solvation = -26666.588287 eV Core-core repulsion = 22903.239584 eV Total energy + Delta-G solvation = -3763.348704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.50690 -37.53857 -36.44785 -35.10520 -34.99472 -34.01189 -32.98809 -30.23460 -29.84654 -29.43092 -27.42765 -25.79136 -25.30316 -23.51306 -21.48431 -21.10191 -19.93921 -18.78629 -17.59172 -17.15092 -16.98887 -16.24209 -15.80729 -15.48575 -15.44433 -14.95741 -14.42036 -14.14845 -13.76896 -13.40522 -13.34164 -13.18108 -13.07186 -12.91257 -12.38688 -12.30613 -12.15505 -12.02361 -11.79649 -11.74543 -11.43594 -11.33573 -11.32601 -11.28063 -11.24599 -11.15913 -10.92905 -10.87803 -10.41528 -10.36744 -9.73066 -9.60357 -9.56480 -9.48291 -8.92142 -7.92645 -7.66639 -7.12456 -4.77320 1.32307 2.28220 2.89097 2.91804 2.95973 2.96867 3.64121 3.68229 3.83256 4.26317 4.53461 4.61482 4.74318 4.81013 5.15077 5.19956 5.25187 5.29911 5.39878 5.41351 5.52414 5.55437 5.56925 5.76393 5.79775 5.86722 5.93687 6.03713 6.11283 6.13883 6.15073 6.27511 6.37874 6.70687 6.73949 6.94806 7.08454 7.18276 7.36458 7.42044 7.46776 7.66681 7.80251 8.00019 8.34737 8.54339 8.68239 9.79004 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.003964 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.557893 B = 7061.796553 C = 8284.399076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.109 3.891 4 C -0.179 4.179 5 C 0.136 3.864 6 N -1.121 6.121 7 S 2.694 3.306 8 O -0.986 6.986 9 O -0.987 6.987 10 C -0.786 4.786 11 C -0.017 4.017 12 C -0.182 4.182 13 C 0.140 3.860 14 C -0.436 4.436 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.766 5.766 18 Si 0.916 3.084 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.239 4.239 23 C 0.004 3.996 24 O -0.368 6.368 25 C 0.024 3.976 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.412 0.588 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.288 0.712 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.590 -7.924 7.422 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.068 3.932 4 C -0.236 4.236 5 C 0.010 3.990 6 N -0.878 5.878 7 S 2.793 3.207 8 O -0.976 6.976 9 O -0.978 6.978 10 C -0.882 4.882 11 C -0.038 4.038 12 C -0.203 4.203 13 C 0.136 3.864 14 C -0.464 4.464 15 H 0.106 0.894 16 C -0.149 4.149 17 N -0.389 5.389 18 Si 0.739 3.261 19 H -0.180 1.180 20 H -0.192 1.192 21 H -0.196 1.196 22 C -0.260 4.260 23 C -0.016 4.016 24 O -0.287 6.287 25 C -0.072 4.072 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.020 -7.849 6.723 13.081 hybrid contribution -1.195 -0.127 0.443 1.280 sum 6.825 -7.976 7.166 12.710 Atomic orbital electron populations 1.21808 0.94509 1.01632 1.03392 1.22111 0.97722 0.95888 1.02847 1.21708 0.93837 0.92184 0.85453 1.22409 0.95450 1.03202 1.02562 1.21270 0.98735 0.82301 0.96740 1.55619 1.70340 1.26503 1.35318 1.01175 0.75151 0.72199 0.72218 1.93474 1.83825 1.68586 1.51759 1.93487 1.76251 1.42820 1.85220 1.29158 1.22635 1.10045 1.26344 1.20255 0.93995 0.95477 0.94047 1.21327 0.93255 1.00857 1.04832 1.17851 0.92793 0.90259 0.85470 1.19970 0.91697 0.95310 1.39386 0.89448 1.26121 1.01895 0.94358 0.92521 1.69827 1.37238 1.00652 1.31140 0.86123 0.80096 0.80515 0.79378 1.17990 1.19245 1.19553 1.21045 0.93736 1.03282 1.07905 1.20160 0.94967 0.92935 0.93554 1.88043 1.74006 1.53528 1.13141 1.22788 0.98154 0.98012 0.88293 0.91984 0.91518 0.92841 0.90646 0.91345 0.91317 0.92253 0.91054 0.90135 0.89375 0.75393 0.87955 0.86002 0.90104 0.88242 0.87811 0.93989 0.89861 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.32 37.16 0.35 -1.42 16 2 C -0.15 -1.49 4.78 -26.74 -0.13 -1.62 16 3 C 0.11 1.29 0.48 -90.62 -0.04 1.24 16 4 C -0.18 -1.84 8.03 37.16 0.30 -1.54 16 5 C 0.14 1.97 4.73 -4.04 -0.02 1.95 16 6 N -1.12 -17.57 5.40 -10.61 -0.06 -17.63 16 7 S 2.69 52.53 5.73 -107.50 -0.62 51.92 16 8 O -0.99 -20.95 16.72 -57.17 -0.96 -21.90 16 9 O -0.99 -21.21 17.26 -57.17 -0.99 -22.20 16 10 C -0.79 -17.49 5.97 -39.29 -0.23 -17.72 16 11 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 12 C -0.18 -4.55 8.70 -38.87 -0.34 -4.89 16 13 C 0.14 3.57 5.57 -106.82 -0.60 2.97 16 14 C -0.44 -10.77 9.05 -37.74 -0.34 -11.11 16 15 H 0.09 2.05 7.91 -52.49 -0.41 1.64 16 16 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 17 N -0.77 -18.08 10.95 55.55 0.61 -17.47 16 18 Si 0.92 17.05 29.60 -169.99 -5.03 12.02 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 20 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 C -0.24 -5.74 9.80 -38.87 -0.38 -6.12 16 23 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 24 O -0.37 -4.68 9.68 -35.23 -0.34 -5.02 16 25 C 0.02 0.22 10.21 101.05 1.03 1.26 16 26 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 27 H 0.07 0.84 6.46 -51.93 -0.34 0.51 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.60 6.29 -51.93 -0.33 0.27 16 31 H 0.07 0.74 6.89 -51.93 -0.36 0.38 16 32 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.27 6.65 -51.93 -0.35 0.92 16 35 H 0.09 1.23 7.75 -51.93 -0.40 0.82 16 36 H 0.41 5.79 7.58 -34.47 -0.26 5.53 16 37 H 0.10 2.17 7.59 -52.48 -0.40 1.77 16 38 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 39 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 41 H 0.10 2.16 7.60 -52.48 -0.40 1.76 16 42 H 0.04 0.34 6.42 -51.93 -0.33 0.01 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.36 6.31 -51.93 -0.33 0.03 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -30.01 364.33 -9.36 -39.36 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.22 Total: 11.92 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: -1.25 Total: -36.48 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.55 Total: -35.10 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -2.28 Total: -49.12 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.62 Total: 51.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.01 -9.36 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323260611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.827 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds