Wall clock time and date at job start Tue Mar 31 2020 14:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47207 * 2 1 4 4 C 1.53002 * 109.47259 * 185.00065 * 3 2 1 5 5 C 1.53005 * 109.47236 * 304.99878 * 3 2 1 6 6 N 1.46495 * 109.47368 * 184.99780 * 5 3 2 7 7 S 1.65597 * 119.99998 * 164.99693 * 6 5 3 8 8 O 1.42094 * 106.40487 * 311.46219 * 7 6 5 9 9 O 1.42102 * 106.40225 * 178.53950 * 7 6 5 10 10 C 1.76205 * 107.21756 * 65.00594 * 7 6 5 11 11 C 1.38633 * 119.74672 * 269.72992 * 10 7 6 12 12 C 1.37620 * 120.25148 * 179.72098 * 11 10 7 13 13 C 1.40722 * 119.73748 * 0.56367 * 12 11 10 14 14 C 1.41388 * 120.24014 * 179.68104 * 13 12 11 15 15 H 1.08002 * 120.00247 * 204.40192 * 14 13 12 16 16 C 1.39953 * 120.00239 * 24.40728 * 14 13 12 17 17 N 1.30819 * 119.99488 * 17.85490 * 16 14 13 18 18 Si 1.86803 * 119.99976 * 197.85427 * 16 14 13 19 19 H 1.48498 * 109.46969 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46656 * 119.99850 * 18 16 14 21 21 H 1.48495 * 109.47114 * 239.99788 * 18 16 14 22 22 C 1.40718 * 119.51426 * 359.70992 * 13 12 11 23 23 C 1.37619 * 119.74194 * 359.97438 * 22 13 12 24 24 O 1.42902 * 109.47238 * 64.99652 * 3 2 1 25 25 C 1.42903 * 113.99519 * 60.00375 * 24 3 2 26 26 H 1.08993 * 109.47625 * 299.99924 * 1 2 3 27 27 H 1.09006 * 109.47275 * 60.00488 * 1 2 3 28 28 H 1.09004 * 109.47338 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47238 * 239.99557 * 2 1 3 30 30 H 1.08998 * 109.46883 * 120.00254 * 2 1 3 31 31 H 1.09004 * 109.47381 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.46872 * 299.99746 * 4 3 2 33 33 H 1.08994 * 109.47045 * 59.99881 * 4 3 2 34 34 H 1.09004 * 109.46728 * 65.00013 * 5 3 2 35 35 H 1.09001 * 109.46873 * 305.00408 * 5 3 2 36 36 H 0.96998 * 120.00034 * 345.00072 * 6 5 3 37 37 H 1.08004 * 119.87632 * 359.97072 * 11 10 7 38 38 H 1.07998 * 120.13104 * 180.27575 * 12 11 10 39 39 H 0.97007 * 119.99317 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.12531 * 179.97438 * 22 13 12 41 41 H 1.08005 * 119.87057 * 180.02562 * 23 22 13 42 42 H 1.09000 * 109.47345 * 59.99977 * 25 24 3 43 43 H 1.09003 * 109.46554 * 179.97438 * 25 24 3 44 44 H 1.08999 * 109.46977 * 299.99238 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5648 1.4443 -0.1257 5 6 1.4299 2.1991 -1.1817 6 7 2.0086 3.5431 -1.2521 7 16 1.8260 4.4523 -2.6241 8 8 2.1780 3.6103 -3.7133 9 8 2.4606 5.6976 -2.3677 10 6 0.1065 4.7965 -2.7967 11 6 -0.6998 3.9286 -3.5168 12 6 -2.0451 4.1844 -3.6533 13 6 -2.5992 5.3382 -3.0686 14 6 -3.9787 5.6148 -3.2079 15 1 -4.3369 6.6304 -3.1259 16 6 -4.8803 4.5726 -3.4520 17 7 -4.5308 3.3354 -3.2099 18 14 -6.5826 4.9481 -4.1234 19 1 -6.7286 6.4140 -4.3105 20 1 -6.7621 4.2627 -5.4285 21 1 -7.6099 4.4660 -3.1656 22 6 -1.7701 6.2150 -2.3447 23 6 -0.4287 5.9357 -2.2157 24 8 1.6619 2.0814 1.2210 25 6 2.1824 1.4501 2.3927 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 3.9282 2.4719 -0.1253 32 1 3.9994 0.9053 0.7161 33 1 3.8531 0.9570 -1.0571 34 1 0.3509 2.2747 -1.0466 35 1 1.6437 1.6625 -2.1060 36 1 2.4987 3.9004 -0.4952 37 1 -0.2714 3.0463 -3.9690 38 1 -2.6723 3.5046 -4.2110 39 1 -5.1559 2.6130 -3.3788 40 1 -2.1848 7.1035 -1.8923 41 1 0.2095 6.6070 -1.6602 42 1 3.2716 1.4516 2.3527 43 1 1.8508 1.9950 3.2766 44 1 1.8219 0.4227 2.4423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323260611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:51 Heat of formation + Delta-G solvation = -138.021558 kcal Electronic energy + Delta-G solvation = -26667.448173 eV Core-core repulsion = 22903.239584 eV Total energy + Delta-G solvation = -3764.208589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41673 -39.37006 -38.12703 -36.77906 -36.13314 -35.79132 -33.99639 -32.06119 -31.28305 -30.74081 -28.26112 -27.61065 -26.33098 -24.39475 -23.29689 -22.94149 -20.90141 -20.28902 -19.41833 -18.62325 -18.39142 -17.66217 -17.21528 -16.83200 -16.33966 -16.19408 -15.83918 -15.63170 -15.16949 -15.01203 -14.76728 -14.22973 -14.10886 -14.02116 -13.97294 -13.92582 -13.56524 -13.17275 -13.09793 -13.00066 -12.97009 -12.89388 -12.85925 -12.84810 -12.59965 -12.36133 -12.11518 -11.97645 -11.77570 -11.54880 -11.38578 -11.28869 -11.22407 -10.39187 -10.29753 -9.77869 -9.53991 -8.86691 -6.64171 -0.27963 0.49345 1.06632 1.36179 1.42199 1.53004 2.12236 2.25388 2.52931 2.84206 2.94933 3.53520 3.57246 3.70024 3.89252 3.94677 4.31135 4.31920 4.34011 4.46084 4.46422 4.56768 4.61730 4.72794 4.76236 4.79586 4.87082 4.90672 4.94493 4.96087 5.07104 5.10784 5.13111 5.24993 5.25316 5.32943 5.46185 5.53210 5.60334 5.76942 5.93757 6.15702 6.19312 6.36956 6.49684 6.69102 6.81865 8.08658 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.003964 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.557893 B = 7061.796553 C = 8284.399076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.143 4.143 3 C 0.111 3.889 4 C -0.179 4.179 5 C 0.127 3.873 6 N -1.105 6.105 7 S 2.727 3.273 8 O -0.999 6.999 9 O -1.003 7.003 10 C -0.797 4.797 11 C -0.019 4.019 12 C -0.206 4.206 13 C 0.112 3.888 14 C -0.467 4.467 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.794 5.794 18 Si 0.990 3.010 19 H -0.256 1.256 20 H -0.261 1.261 21 H -0.261 1.261 22 C -0.259 4.259 23 C -0.003 4.003 24 O -0.395 6.395 25 C 0.018 3.982 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.423 0.577 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.298 0.702 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 -9.008 8.148 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.181 4.181 3 C 0.070 3.930 4 C -0.236 4.236 5 C 0.001 3.999 6 N -0.865 5.865 7 S 2.822 3.178 8 O -0.990 6.990 9 O -0.994 6.994 10 C -0.890 4.890 11 C -0.039 4.039 12 C -0.226 4.226 13 C 0.108 3.892 14 C -0.494 4.494 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.417 5.417 18 Si 0.809 3.191 19 H -0.179 1.179 20 H -0.185 1.185 21 H -0.185 1.185 22 C -0.279 4.279 23 C -0.022 4.022 24 O -0.315 6.315 25 C -0.078 4.078 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.259 0.741 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.666 -8.921 7.458 14.502 hybrid contribution -1.299 0.154 0.302 1.342 sum 7.368 -8.768 7.760 13.834 Atomic orbital electron populations 1.21796 0.95790 1.02033 1.01787 1.22116 0.96494 0.95037 1.04484 1.21679 0.94724 0.92347 0.84228 1.22423 0.94047 1.03292 1.03888 1.21464 0.97971 0.81753 0.98747 1.55219 1.70014 1.26665 1.34647 1.00245 0.73400 0.71719 0.72432 1.93453 1.83463 1.68837 1.53204 1.93459 1.76004 1.44246 1.85661 1.29662 1.24409 1.09555 1.25382 1.20458 0.93599 0.96052 0.93821 1.21349 0.94083 1.01251 1.05919 1.18196 0.93782 0.90943 0.86253 1.20247 0.92051 0.96100 1.41033 0.89232 1.26977 1.05604 0.93758 0.92000 1.69848 1.39009 1.01638 1.31186 0.85026 0.74975 0.80231 0.78821 1.17883 1.18536 1.18500 1.21268 0.94466 1.03783 1.08387 1.20442 0.94891 0.93403 0.93493 1.87999 1.74776 1.54549 1.14148 1.22976 0.99088 0.98519 0.87203 0.93171 0.93553 0.91430 0.89395 0.89243 0.91943 0.90059 0.90480 0.91964 0.88828 0.74104 0.86488 0.86990 0.89026 0.87263 0.85935 0.92500 0.89336 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.32 71.98 0.67 -2.76 16 2 C -0.14 -2.59 4.78 30.59 0.15 -2.44 16 3 C 0.11 2.42 0.48 -10.79 -0.01 2.42 16 4 C -0.18 -3.19 8.03 71.98 0.58 -2.62 16 5 C 0.13 3.57 4.73 86.38 0.41 3.98 16 6 N -1.10 -33.49 5.40 -187.49 -1.01 -34.51 16 7 S 2.73 104.24 5.73 -56.49 -0.32 103.92 16 8 O -1.00 -41.46 16.72 -128.00 -2.14 -43.60 16 9 O -1.00 -42.00 17.26 -128.00 -2.21 -44.20 16 10 C -0.80 -35.71 5.97 22.46 0.13 -35.58 16 11 C -0.02 -0.91 9.49 22.22 0.21 -0.70 16 12 C -0.21 -10.65 8.70 22.73 0.20 -10.45 16 13 C 0.11 5.90 5.57 -21.29 -0.12 5.78 16 14 C -0.47 -23.72 9.05 23.46 0.21 -23.51 16 15 H 0.09 4.33 7.91 -2.91 -0.02 4.30 16 16 C 0.04 1.68 5.14 85.26 0.44 2.12 16 17 N -0.79 -38.18 10.95 21.83 0.24 -37.94 16 18 Si 0.99 34.78 29.60 68.60 2.03 36.81 16 19 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 20 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 21 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 22 C -0.26 -12.76 9.80 22.73 0.22 -12.54 16 23 C 0.00 -0.12 9.49 22.22 0.21 0.10 16 24 O -0.40 -9.42 9.68 -148.98 -1.44 -10.87 16 25 C 0.02 0.29 10.21 113.37 1.16 1.45 16 26 H 0.05 1.19 7.82 -2.39 -0.02 1.18 16 27 H 0.05 1.18 6.46 -2.38 -0.02 1.17 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.27 6.29 -2.39 -0.02 1.25 16 31 H 0.06 1.19 6.89 -2.39 -0.02 1.17 16 32 H 0.08 1.09 6.54 -2.39 -0.02 1.08 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.99 6.65 -2.39 -0.02 1.98 16 35 H 0.09 2.52 7.75 -2.39 -0.02 2.50 16 36 H 0.42 11.27 7.58 -96.75 -0.73 10.54 16 37 H 0.12 5.03 7.59 -2.91 -0.02 5.00 16 38 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 39 H 0.30 12.66 8.30 -92.70 -0.77 11.89 16 40 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 41 H 0.12 5.06 7.60 -2.91 -0.02 5.04 16 42 H 0.06 0.74 6.42 -2.39 -0.02 0.73 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 0.75 6.31 -2.39 -0.02 0.73 16 Total: -1.00 -64.72 364.33 -0.11 -64.83 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: 0.29 Total: 40.33 kcal Atomic # 6 Polarization: -79.22 SS G_CDS: 4.46 Total: -74.75 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -0.77 Total: -72.45 kcal Atomic # 8 Polarization: -92.88 SS G_CDS: -5.79 Total: -98.67 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Atomic # 16 Polarization: 104.24 SS G_CDS: -0.32 Total: 103.92 kcal Total: -64.72 -0.11 -64.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323260611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.196 kcal (2) G-P(sol) polarization free energy of solvation -64.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds