Wall clock time and date at job start Tue Mar 31 2020 14:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47018 * 305.00244 * 3 2 1 5 5 C 1.53001 * 109.47414 * 185.00455 * 3 2 1 6 6 N 1.46495 * 109.47115 * 179.97438 * 5 3 2 7 7 S 1.65599 * 119.99680 * 165.26871 * 6 5 3 8 8 O 1.42110 * 106.40002 * 178.26536 * 7 6 5 9 9 O 1.42098 * 106.40619 * 311.18839 * 7 6 5 10 10 C 1.76205 * 107.21698 * 64.72954 * 7 6 5 11 11 C 1.38636 * 119.74703 * 269.72649 * 10 7 6 12 12 C 1.37613 * 120.24938 * 179.72364 * 11 10 7 13 13 C 1.40715 * 119.74267 * 0.56326 * 12 11 10 14 14 C 1.41399 * 120.24704 * 179.68394 * 13 12 11 15 15 H 1.07996 * 120.00556 * 204.40200 * 14 13 12 16 16 C 1.39952 * 119.99372 * 24.40508 * 14 13 12 17 17 N 1.30813 * 120.00315 * 17.85706 * 16 14 13 18 18 Si 1.86801 * 119.99475 * 197.85552 * 16 14 13 19 19 H 1.48499 * 109.47283 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46827 * 120.00040 * 18 16 14 21 21 H 1.48499 * 109.47432 * 239.99990 * 18 16 14 22 22 C 1.40718 * 119.51153 * 359.71106 * 13 12 11 23 23 C 1.37610 * 119.74584 * 359.97438 * 22 13 12 24 24 O 1.42899 * 109.46971 * 64.99661 * 3 2 1 25 25 C 1.42898 * 113.99647 * 60.00844 * 24 3 2 26 26 H 1.08997 * 109.46847 * 60.00226 * 1 2 3 27 27 H 1.09002 * 109.46570 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46749 * 299.99781 * 1 2 3 29 29 H 1.08998 * 109.47209 * 240.00454 * 2 1 3 30 30 H 1.08992 * 109.47547 * 119.99697 * 2 1 3 31 31 H 1.09006 * 109.46866 * 300.00069 * 4 3 2 32 32 H 1.09001 * 109.47611 * 59.99338 * 4 3 2 33 33 H 1.08996 * 109.47136 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47147 * 59.99268 * 5 3 2 35 35 H 1.09005 * 109.46500 * 300.00025 * 5 3 2 36 36 H 0.97002 * 120.00102 * 344.99931 * 6 5 3 37 37 H 1.07998 * 119.87397 * 359.97345 * 11 10 7 38 38 H 1.08000 * 120.13232 * 180.28063 * 12 11 10 39 39 H 0.97001 * 119.99944 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.12712 * 179.97438 * 22 13 12 41 41 H 1.07999 * 119.88079 * 180.02562 * 23 22 13 42 42 H 1.08998 * 109.47542 * 59.99283 * 25 24 3 43 43 H 1.09003 * 109.46917 * 179.97438 * 25 24 3 44 44 H 1.09005 * 109.46565 * 299.99210 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1992 -1.1816 5 6 3.5649 1.4445 -0.1258 6 7 4.0530 2.8257 -0.1264 7 16 5.6617 3.1353 0.1157 8 8 5.8182 4.5444 0.0180 9 8 6.0462 2.3882 1.2617 10 6 6.5372 2.4418 -1.2471 11 6 6.9937 1.1346 -1.1780 12 6 7.6737 0.5808 -2.2386 13 6 7.9154 1.3505 -3.3914 14 6 8.6188 0.7943 -4.4847 15 1 9.1430 1.4395 -5.1741 16 6 8.6355 -0.5923 -4.6734 17 7 7.7454 -1.3441 -4.0787 18 14 9.9289 -1.3694 -5.7745 19 1 10.8123 -0.3099 -6.3243 20 1 10.7406 -2.3289 -4.9836 21 1 9.2624 -2.0873 -6.8906 22 6 7.4524 2.6782 -3.4481 23 6 6.7689 3.2092 -2.3782 24 8 1.6619 2.0814 1.2210 25 6 2.1825 1.4502 2.3926 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 1.7182 1.7118 -2.1130 32 1 0.3436 2.1978 -1.0922 33 1 1.7928 3.2269 -1.1814 34 1 3.8532 0.9571 -1.0572 35 1 3.9995 0.9054 0.7160 36 1 3.4347 3.5586 -0.2726 37 1 6.8115 0.5474 -0.2902 38 1 8.0245 -0.4392 -2.1845 39 1 7.7568 -2.3052 -4.2098 40 1 7.6327 3.2780 -4.3279 41 1 6.4123 4.2277 -2.4196 42 1 3.2717 1.4517 2.3526 43 1 1.8509 1.9950 3.2766 44 1 1.8221 0.4227 2.4422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323260613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:55 Heat of formation + Delta-G solvation = -118.556993 kcal Electronic energy + Delta-G solvation = -26621.443902 eV Core-core repulsion = 22858.079360 eV Total energy + Delta-G solvation = -3763.364542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.51985 -37.59183 -36.46359 -35.10926 -34.72191 -34.05953 -33.47139 -30.27622 -29.56974 -29.48449 -27.05883 -26.05602 -25.83051 -23.22872 -21.53430 -21.14803 -19.85560 -18.86045 -17.64081 -17.27672 -16.77023 -16.43038 -15.73280 -15.54223 -15.43305 -15.03612 -14.46889 -14.20848 -14.04157 -13.44962 -13.37647 -13.23829 -12.89409 -12.51376 -12.43779 -12.29621 -12.19341 -12.05589 -11.80901 -11.75762 -11.65690 -11.46231 -11.35058 -11.28925 -11.20369 -11.18554 -10.94484 -10.92415 -10.41137 -10.37163 -9.78302 -9.65761 -9.52873 -9.49480 -8.99236 -7.97957 -7.72308 -7.17228 -4.82265 1.28028 2.23151 2.85831 2.88406 2.90933 2.93810 3.64399 3.65001 3.86449 4.22037 4.50055 4.62645 4.72322 4.80754 5.14700 5.22801 5.27616 5.35330 5.39314 5.42941 5.52677 5.61571 5.69056 5.72939 5.82731 5.85281 5.91365 5.93477 6.05575 6.09392 6.12868 6.20096 6.28613 6.65872 6.69143 6.89822 7.03134 7.19318 7.31647 7.38309 7.41808 7.61722 7.75373 7.94964 8.29851 8.49413 8.63013 9.74236 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.003743 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.472704 B = 7479.083972 C = 8628.049355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C 0.110 3.890 4 C -0.141 4.141 5 C 0.097 3.903 6 N -1.118 6.118 7 S 2.694 3.306 8 O -0.986 6.986 9 O -0.986 6.986 10 C -0.787 4.787 11 C -0.017 4.017 12 C -0.182 4.182 13 C 0.139 3.861 14 C -0.435 4.435 15 H 0.088 0.912 16 C 0.073 3.927 17 N -0.766 5.766 18 Si 0.916 3.084 19 H -0.256 1.256 20 H -0.267 1.267 21 H -0.270 1.270 22 C -0.239 4.239 23 C 0.003 3.997 24 O -0.372 6.372 25 C 0.018 3.982 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.411 0.589 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.288 0.712 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 -1.051 4.308 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C 0.070 3.930 4 C -0.198 4.198 5 C -0.031 4.031 6 N -0.876 5.876 7 S 2.792 3.208 8 O -0.977 6.977 9 O -0.977 6.977 10 C -0.883 4.883 11 C -0.038 4.038 12 C -0.203 4.203 13 C 0.136 3.864 14 C -0.463 4.463 15 H 0.106 0.894 16 C -0.149 4.149 17 N -0.389 5.389 18 Si 0.739 3.261 19 H -0.180 1.180 20 H -0.192 1.192 21 H -0.195 1.195 22 C -0.260 4.260 23 C -0.017 4.017 24 O -0.291 6.291 25 C -0.078 4.078 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.246 0.754 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.804 -0.824 5.133 11.990 hybrid contribution 0.537 -0.849 -1.210 1.572 sum -10.267 -1.673 3.924 11.118 Atomic orbital electron populations 1.21740 0.94935 1.01341 1.02463 1.22105 0.97288 0.96223 1.03390 1.21708 0.92402 0.92807 0.86131 1.21826 1.01353 1.00851 0.95798 1.21782 0.94990 0.83286 1.03001 1.55594 1.27636 1.13013 1.91329 1.01199 0.71988 0.72887 0.74688 1.93490 1.85396 1.30688 1.88131 1.93468 1.81863 1.73524 1.48811 1.29172 1.31949 1.07374 1.19805 1.20252 0.94747 0.91920 0.96846 1.21329 1.05229 1.00808 0.92915 1.17856 0.86040 0.90897 0.91630 1.19982 1.25639 0.91860 1.08781 0.89402 1.26126 0.95330 0.97565 0.95886 1.69815 1.27756 1.07503 1.33809 0.86116 0.80636 0.79651 0.79681 1.17964 1.19220 1.19522 1.21050 1.08449 0.97659 0.98797 1.20164 0.93940 0.96172 0.91457 1.87931 1.73785 1.54067 1.13322 1.22858 0.99434 0.97677 0.87827 0.92184 0.92936 0.92292 0.90336 0.91160 0.90561 0.91354 0.91651 0.90339 0.90359 0.75420 0.88002 0.85997 0.90061 0.88206 0.87790 0.92877 0.89904 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.32 37.16 0.35 -0.97 16 2 C -0.15 -1.54 4.78 -26.73 -0.13 -1.67 16 3 C 0.11 1.30 0.51 -90.61 -0.05 1.25 16 4 C -0.14 -1.51 8.18 37.16 0.30 -1.20 16 5 C 0.10 1.36 4.76 -4.04 -0.02 1.34 16 6 N -1.12 -17.22 5.72 -10.61 -0.06 -17.28 16 7 S 2.69 52.19 5.73 -107.50 -0.62 51.58 16 8 O -0.99 -21.14 17.26 -57.17 -0.99 -22.13 16 9 O -0.99 -20.99 16.74 -57.17 -0.96 -21.94 16 10 C -0.79 -17.17 5.96 -39.29 -0.23 -17.41 16 11 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 12 C -0.18 -4.49 8.70 -38.87 -0.34 -4.83 16 13 C 0.14 3.49 5.58 -106.82 -0.60 2.89 16 14 C -0.44 -10.56 9.05 -37.74 -0.34 -10.90 16 15 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 16 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 17 N -0.77 -17.79 10.95 55.55 0.61 -17.18 16 18 Si 0.92 16.78 29.60 -169.99 -5.03 11.75 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 C -0.24 -5.61 9.80 -38.87 -0.38 -5.99 16 23 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 24 O -0.37 -4.68 9.75 -35.23 -0.34 -5.02 16 25 C 0.02 0.21 10.21 101.05 1.03 1.24 16 26 H 0.06 0.51 6.34 -51.93 -0.33 0.18 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.69 6.29 -51.93 -0.33 0.36 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.65 6.35 -51.93 -0.33 0.32 16 33 H 0.06 0.71 6.60 -51.93 -0.34 0.36 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 36 H 0.41 5.64 7.08 -34.47 -0.24 5.39 16 37 H 0.10 2.14 7.59 -52.49 -0.40 1.74 16 38 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 39 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 42 H 0.05 0.67 6.42 -51.93 -0.33 0.34 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.42 6.31 -51.93 -0.33 0.09 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -29.45 363.73 -9.31 -38.77 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.17 Total: 11.75 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: -1.24 Total: -35.77 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.55 Total: -34.46 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -2.29 Total: -49.10 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 52.19 SS G_CDS: -0.62 Total: 51.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.45 -9.31 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323260613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.788 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds