Wall clock time and date at job start Tue Mar 31 2020 14:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47018 * 305.00244 * 3 2 1 5 5 C 1.53001 * 109.47414 * 185.00455 * 3 2 1 6 6 N 1.46495 * 109.47115 * 179.97438 * 5 3 2 7 7 S 1.65599 * 119.99680 * 165.26871 * 6 5 3 8 8 O 1.42110 * 106.40002 * 178.26536 * 7 6 5 9 9 O 1.42098 * 106.40619 * 311.18839 * 7 6 5 10 10 C 1.76205 * 107.21698 * 64.72954 * 7 6 5 11 11 C 1.38636 * 119.74703 * 269.72649 * 10 7 6 12 12 C 1.37613 * 120.24938 * 179.72364 * 11 10 7 13 13 C 1.40715 * 119.74267 * 0.56326 * 12 11 10 14 14 C 1.41399 * 120.24704 * 179.68394 * 13 12 11 15 15 H 1.07996 * 120.00556 * 204.40200 * 14 13 12 16 16 C 1.39952 * 119.99372 * 24.40508 * 14 13 12 17 17 N 1.30813 * 120.00315 * 17.85706 * 16 14 13 18 18 Si 1.86801 * 119.99475 * 197.85552 * 16 14 13 19 19 H 1.48499 * 109.47283 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46827 * 120.00040 * 18 16 14 21 21 H 1.48499 * 109.47432 * 239.99990 * 18 16 14 22 22 C 1.40718 * 119.51153 * 359.71106 * 13 12 11 23 23 C 1.37610 * 119.74584 * 359.97438 * 22 13 12 24 24 O 1.42899 * 109.46971 * 64.99661 * 3 2 1 25 25 C 1.42898 * 113.99647 * 60.00844 * 24 3 2 26 26 H 1.08997 * 109.46847 * 60.00226 * 1 2 3 27 27 H 1.09002 * 109.46570 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46749 * 299.99781 * 1 2 3 29 29 H 1.08998 * 109.47209 * 240.00454 * 2 1 3 30 30 H 1.08992 * 109.47547 * 119.99697 * 2 1 3 31 31 H 1.09006 * 109.46866 * 300.00069 * 4 3 2 32 32 H 1.09001 * 109.47611 * 59.99338 * 4 3 2 33 33 H 1.08996 * 109.47136 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47147 * 59.99268 * 5 3 2 35 35 H 1.09005 * 109.46500 * 300.00025 * 5 3 2 36 36 H 0.97002 * 120.00102 * 344.99931 * 6 5 3 37 37 H 1.07998 * 119.87397 * 359.97345 * 11 10 7 38 38 H 1.08000 * 120.13232 * 180.28063 * 12 11 10 39 39 H 0.97001 * 119.99944 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.12712 * 179.97438 * 22 13 12 41 41 H 1.07999 * 119.88079 * 180.02562 * 23 22 13 42 42 H 1.08998 * 109.47542 * 59.99283 * 25 24 3 43 43 H 1.09003 * 109.46917 * 179.97438 * 25 24 3 44 44 H 1.09005 * 109.46565 * 299.99210 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1992 -1.1816 5 6 3.5649 1.4445 -0.1258 6 7 4.0530 2.8257 -0.1264 7 16 5.6617 3.1353 0.1157 8 8 5.8182 4.5444 0.0180 9 8 6.0462 2.3882 1.2617 10 6 6.5372 2.4418 -1.2471 11 6 6.9937 1.1346 -1.1780 12 6 7.6737 0.5808 -2.2386 13 6 7.9154 1.3505 -3.3914 14 6 8.6188 0.7943 -4.4847 15 1 9.1430 1.4395 -5.1741 16 6 8.6355 -0.5923 -4.6734 17 7 7.7454 -1.3441 -4.0787 18 14 9.9289 -1.3694 -5.7745 19 1 10.8123 -0.3099 -6.3243 20 1 10.7406 -2.3289 -4.9836 21 1 9.2624 -2.0873 -6.8906 22 6 7.4524 2.6782 -3.4481 23 6 6.7689 3.2092 -2.3782 24 8 1.6619 2.0814 1.2210 25 6 2.1825 1.4502 2.3926 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 1.7182 1.7118 -2.1130 32 1 0.3436 2.1978 -1.0922 33 1 1.7928 3.2269 -1.1814 34 1 3.8532 0.9571 -1.0572 35 1 3.9995 0.9054 0.7160 36 1 3.4347 3.5586 -0.2726 37 1 6.8115 0.5474 -0.2902 38 1 8.0245 -0.4392 -2.1845 39 1 7.7568 -2.3052 -4.2098 40 1 7.6327 3.2780 -4.3279 41 1 6.4123 4.2277 -2.4196 42 1 3.2717 1.4517 2.3526 43 1 1.8509 1.9950 3.2766 44 1 1.8221 0.4227 2.4422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323260613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:54 Heat of formation + Delta-G solvation = -137.684840 kcal Electronic energy + Delta-G solvation = -26622.273348 eV Core-core repulsion = 22858.079360 eV Total energy + Delta-G solvation = -3764.193988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47400 -39.38504 -38.13852 -36.79296 -35.88310 -35.77472 -34.42408 -32.06958 -31.29560 -30.44606 -28.07999 -27.61937 -26.93973 -24.15191 -23.30665 -22.94761 -20.82335 -20.34062 -19.42655 -18.75205 -18.30126 -17.61690 -17.21041 -16.89770 -16.38820 -16.29171 -15.84127 -15.65431 -15.27070 -15.09961 -14.94600 -14.27277 -14.11483 -13.98171 -13.90868 -13.60991 -13.45546 -13.17407 -13.12507 -13.08813 -12.99497 -12.91229 -12.87280 -12.64938 -12.60442 -12.55755 -12.20006 -11.98427 -11.73633 -11.55858 -11.36782 -11.24140 -11.23143 -10.50878 -10.30658 -9.79224 -9.55446 -8.87843 -6.65077 -0.30808 0.47664 1.05582 1.36265 1.41953 1.52815 2.11696 2.23454 2.52153 2.85765 2.94489 3.52431 3.52704 3.69500 3.83226 3.95457 4.26071 4.30385 4.32985 4.42869 4.48292 4.55243 4.61486 4.72133 4.80737 4.81901 4.86430 4.88017 4.94619 4.98474 5.09395 5.10931 5.13874 5.17413 5.23875 5.37528 5.49698 5.52190 5.59212 5.76014 5.92962 6.13463 6.16160 6.31529 6.48764 6.68211 6.80606 8.07382 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.003743 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.472704 B = 7479.083972 C = 8628.049355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 C 0.113 3.887 4 C -0.144 4.144 5 C 0.089 3.911 6 N -1.103 6.103 7 S 2.724 3.276 8 O -1.004 7.004 9 O -1.003 7.003 10 C -0.795 4.795 11 C -0.019 4.019 12 C -0.205 4.205 13 C 0.112 3.888 14 C -0.466 4.466 15 H 0.090 0.910 16 C 0.037 3.963 17 N -0.793 5.793 18 Si 0.989 3.011 19 H -0.256 1.256 20 H -0.262 1.262 21 H -0.260 1.260 22 C -0.257 4.257 23 C -0.002 4.002 24 O -0.381 6.381 25 C 0.013 3.987 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.422 0.578 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.299 0.701 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.035 0.965 43 H 0.096 0.904 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 -1.481 4.155 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.190 4.190 3 C 0.072 3.928 4 C -0.201 4.201 5 C -0.038 4.038 6 N -0.864 5.864 7 S 2.820 3.180 8 O -0.994 6.994 9 O -0.993 6.993 10 C -0.889 4.889 11 C -0.039 4.039 12 C -0.226 4.226 13 C 0.108 3.892 14 C -0.492 4.492 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.416 5.416 18 Si 0.809 3.191 19 H -0.179 1.179 20 H -0.187 1.187 21 H -0.185 1.185 22 C -0.277 4.277 23 C -0.022 4.022 24 O -0.300 6.300 25 C -0.083 4.083 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.259 0.741 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.142 0.858 42 H 0.054 0.946 43 H 0.115 0.885 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.820 -1.248 4.967 12.882 hybrid contribution 0.752 -0.691 -1.072 1.480 sum -11.068 -1.939 3.896 11.893 Atomic orbital electron populations 1.21713 0.93736 1.02098 1.02528 1.22119 0.98270 0.94965 1.03656 1.21748 0.90534 0.94122 0.86390 1.21877 1.02234 1.00511 0.95447 1.21999 0.97006 0.82035 1.02741 1.55187 1.26064 1.14288 1.90897 1.00307 0.72407 0.71843 0.73477 1.93461 1.86152 1.31698 1.88105 1.93446 1.82781 1.73869 1.49222 1.29592 1.31987 1.06877 1.20415 1.20430 0.94126 0.92572 0.96800 1.21341 1.06735 1.00699 0.93785 1.18194 0.86888 0.91816 0.92251 1.20255 1.26615 0.93211 1.09158 0.89182 1.26955 0.96896 0.97338 0.97090 1.69832 1.28820 1.08341 1.34595 0.85038 0.77720 0.78555 0.77836 1.17904 1.18659 1.18459 1.21270 1.08994 0.97594 0.99851 1.20442 0.93379 0.97106 0.91229 1.87923 1.73739 1.54635 1.13742 1.22969 0.98370 0.98967 0.87961 0.91702 0.91873 0.92613 0.90153 0.90911 0.90209 0.89969 0.91948 0.90690 0.90646 0.74087 0.86756 0.87044 0.88997 0.87140 0.85808 0.94650 0.88513 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.32 71.98 0.67 -1.56 16 2 C -0.15 -2.81 4.78 30.60 0.15 -2.66 16 3 C 0.11 2.48 0.51 -10.79 -0.01 2.47 16 4 C -0.14 -2.81 8.18 71.98 0.59 -2.22 16 5 C 0.09 2.41 4.76 86.38 0.41 2.82 16 6 N -1.10 -32.75 5.72 -187.49 -1.07 -33.82 16 7 S 2.72 103.42 5.73 -56.49 -0.32 103.10 16 8 O -1.00 -41.89 17.26 -128.00 -2.21 -44.10 16 9 O -1.00 -42.01 16.74 -128.00 -2.14 -44.15 16 10 C -0.80 -34.62 5.96 22.46 0.13 -34.49 16 11 C -0.02 -0.89 9.49 22.22 0.21 -0.68 16 12 C -0.21 -10.37 8.70 22.73 0.20 -10.17 16 13 C 0.11 5.75 5.58 -21.29 -0.12 5.63 16 14 C -0.47 -23.03 9.05 23.46 0.21 -22.81 16 15 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 16 C 0.04 1.68 5.14 85.26 0.44 2.11 16 17 N -0.79 -37.17 10.95 21.83 0.24 -36.93 16 18 Si 0.99 33.97 29.60 68.60 2.03 36.00 16 19 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 20 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 21 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 22 C -0.26 -12.22 9.80 22.73 0.22 -12.00 16 23 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 24 O -0.38 -8.91 9.75 -148.98 -1.45 -10.36 16 25 C 0.01 0.28 10.21 113.37 1.16 1.44 16 26 H 0.06 0.94 6.34 -2.39 -0.02 0.93 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.91 7.82 -2.39 -0.02 0.89 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.30 6.29 -2.39 -0.02 1.28 16 31 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.08 1.38 6.35 -2.39 -0.02 1.36 16 33 H 0.06 1.24 6.60 -2.39 -0.02 1.23 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.10 6.17 -2.38 -0.01 2.09 16 36 H 0.42 10.94 7.08 -96.74 -0.69 10.25 16 37 H 0.11 4.85 7.59 -2.91 -0.02 4.83 16 38 H 0.11 5.74 6.16 -2.91 -0.02 5.73 16 39 H 0.30 12.35 8.30 -92.71 -0.77 11.58 16 40 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 41 H 0.12 4.90 7.60 -2.91 -0.02 4.87 16 42 H 0.03 0.86 6.42 -2.39 -0.02 0.85 16 43 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 1.04 6.31 -2.38 -0.02 1.02 16 Total: -1.00 -62.38 363.73 -0.12 -62.50 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: 0.34 Total: 39.75 kcal Atomic # 6 Polarization: -76.46 SS G_CDS: 4.48 Total: -71.98 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -0.83 Total: -70.75 kcal Atomic # 8 Polarization: -92.81 SS G_CDS: -5.80 Total: -98.62 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 103.42 SS G_CDS: -0.32 Total: 103.10 kcal Total: -62.38 -0.12 -62.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323260613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.185 kcal (2) G-P(sol) polarization free energy of solvation -62.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds