Wall clock time and date at job start Tue Mar 31 2020 15:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47267 * 2 1 4 4 C 1.50705 * 109.47166 * 240.00223 * 2 1 3 5 5 H 1.07998 * 120.00339 * 240.00647 * 4 2 1 6 6 C 1.37880 * 119.99534 * 59.99858 * 4 2 1 7 7 N 1.31510 * 120.00316 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99558 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47557 * 60.00420 * 8 6 4 10 10 H 1.48508 * 109.47066 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47320 * 299.99832 * 8 6 4 12 12 C 1.52996 * 109.47346 * 120.00559 * 2 1 3 13 13 S 1.81401 * 109.46939 * 299.99657 * 12 2 1 14 14 O 1.42100 * 110.54450 * 68.37497 * 13 12 2 15 15 O 1.42106 * 110.54438 * 291.62483 * 13 12 2 16 16 N 1.65600 * 104.45109 * 179.97438 * 13 12 2 17 17 C 1.47431 * 125.64810 * 269.96032 * 16 13 12 18 18 C 1.55392 * 104.87127 * 204.16730 * 17 16 13 19 19 C 1.55157 * 101.36576 * 323.01456 * 18 17 16 20 20 C 1.47019 * 125.65047 * 89.99960 * 16 13 12 21 21 H 1.09004 * 109.88394 * 298.32333 * 20 16 13 22 22 C 1.50704 * 110.01260 * 59.41546 * 20 16 13 23 23 C 1.34505 * 125.79015 * 219.34422 * 22 20 16 24 24 C 1.41390 * 106.84004 * 179.97438 * 23 22 20 25 25 C 1.34513 * 106.84044 * 359.97438 * 24 23 22 26 26 O 1.34305 * 108.41977 * 359.74231 * 25 24 23 27 27 H 1.09000 * 109.46927 * 299.99863 * 1 2 3 28 28 H 1.09002 * 109.47337 * 59.99482 * 1 2 3 29 29 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46758 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47427 * 299.99983 * 3 2 1 32 32 H 1.09004 * 109.47139 * 60.00688 * 3 2 1 33 33 H 0.96999 * 120.00348 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47363 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.47526 * 59.99300 * 12 2 1 36 36 H 1.08999 * 110.36190 * 322.99782 * 17 16 13 37 37 H 1.08998 * 110.36491 * 85.21461 * 17 16 13 38 38 H 1.09004 * 111.18705 * 204.97719 * 18 17 16 39 39 H 1.09001 * 111.02055 * 80.98222 * 18 17 16 40 40 H 1.09002 * 110.72219 * 277.04408 * 19 18 17 41 41 H 1.09003 * 110.71618 * 153.95021 * 19 18 17 42 42 H 1.08003 * 126.58318 * 0.03102 * 23 22 20 43 43 H 1.08000 * 126.58137 * 179.97438 * 24 23 22 44 44 H 1.07996 * 125.78887 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 1.8257 -2.5200 -4.0079 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7303 14 8 0.0281 -0.0184 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0531 -0.7410 3.9935 17 6 1.3947 -1.8857 4.6492 18 6 2.0140 -1.9398 6.0733 19 6 3.4849 -1.5409 5.7825 20 6 3.3484 -0.5043 4.6474 21 1 4.1564 -0.6344 3.9275 22 6 3.3907 0.8896 5.2186 23 6 4.4532 1.7142 5.2031 24 6 4.0527 2.9105 5.8414 25 6 2.7691 2.7456 6.2083 26 8 2.3715 1.5219 5.8231 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 0.7088 1.1616 -3.4843 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2492 36 1 0.3190 -1.7207 4.7098 37 1 1.6067 -2.8069 4.1066 38 1 1.9569 -2.9455 6.4898 39 1 1.5367 -1.2170 6.7350 40 1 4.0600 -2.4047 5.4488 41 1 3.9437 -1.0907 6.6629 42 1 5.4255 1.5033 4.7828 43 1 4.6606 3.7884 6.0034 44 1 2.1603 3.4750 6.7218 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332351499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:52 Heat of formation + Delta-G solvation = -48.759100 kcal Electronic energy + Delta-G solvation = -27735.501442 eV Core-core repulsion = 23975.163564 eV Total energy + Delta-G solvation = -3760.337878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35734 -38.49355 -36.51353 -36.26043 -35.23368 -32.84062 -31.66445 -30.98520 -30.91443 -27.40862 -26.62455 -25.71304 -25.22733 -22.81848 -21.79537 -21.44420 -20.35072 -19.42301 -18.58965 -17.48811 -17.16797 -16.08951 -15.93825 -15.63529 -15.32416 -14.94011 -14.82184 -14.10873 -13.96502 -13.75508 -13.23231 -12.99906 -12.93828 -12.62465 -12.56324 -12.49862 -12.32097 -12.04859 -11.61654 -11.49611 -11.44198 -11.19121 -11.06669 -11.04231 -10.97207 -10.92735 -10.68598 -10.39155 -10.26130 -10.10206 -9.67934 -9.65015 -9.59415 -9.04434 -8.66118 -8.40057 -8.22416 -6.03230 -4.15524 0.80256 1.93776 2.79713 3.05290 3.25832 3.26745 3.32279 3.33734 4.29879 4.33817 4.39496 4.45346 4.65134 4.82151 4.92801 5.13399 5.21644 5.22218 5.24895 5.39149 5.56500 5.59583 5.64722 5.67001 5.71331 5.78816 5.95886 5.99297 6.04875 6.17635 6.26167 6.37534 6.46740 6.70066 6.70687 6.79947 6.91347 7.04954 7.31593 7.35682 7.50528 7.67451 7.97896 8.09384 8.32829 8.82594 9.49746 10.98083 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.004129 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.546037 B = 6780.078007 C = 7208.796083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.083 3.917 3 C -0.162 4.162 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.603 3.397 14 O -0.959 6.959 15 O -0.946 6.946 16 N -1.014 6.014 17 C 0.112 3.888 18 C -0.128 4.128 19 C -0.122 4.122 20 C 0.232 3.768 21 H 0.104 0.896 22 C -0.009 4.009 23 C -0.200 4.200 24 C -0.211 4.211 25 C -0.043 4.043 26 O -0.164 6.164 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -3.583 18.040 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.220 4.220 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.703 3.297 14 O -0.949 6.949 15 O -0.936 6.936 16 N -0.849 5.849 17 C -0.013 4.013 18 C -0.167 4.167 19 C -0.161 4.161 20 C 0.125 3.875 21 H 0.121 0.879 22 C -0.062 4.062 23 C -0.220 4.220 24 C -0.231 4.231 25 C -0.111 4.111 26 O -0.059 6.059 27 H 0.045 0.955 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.661 -2.777 17.982 18.782 hybrid contribution 0.938 -0.681 -1.283 1.729 sum 5.599 -3.458 16.699 17.949 Atomic orbital electron populations 1.22272 0.96949 1.00597 1.02292 1.17927 0.92798 0.92249 0.88999 1.22262 0.99677 0.97758 1.02313 1.20899 1.31822 1.12096 0.89388 0.92380 1.24938 0.94879 0.94974 0.98916 1.69791 1.36230 1.22542 1.23601 0.86594 0.79149 0.79717 0.82142 1.20253 1.21151 1.20265 1.30592 1.11186 1.12845 1.16962 1.05552 0.74559 0.74843 0.74762 1.93527 1.29223 1.86533 1.85663 1.93572 1.77872 1.36933 1.85228 1.59163 1.28812 1.47381 1.49572 1.22130 0.98228 0.88272 0.92646 1.22849 0.95002 1.02235 0.96566 1.22731 0.97900 0.97909 0.97566 1.19774 0.86863 0.86887 0.93995 0.87876 1.22583 0.86560 0.96124 1.00885 1.21423 1.00171 0.94105 1.06324 1.21702 0.96379 0.99857 1.05134 1.23931 0.96298 0.86487 1.04359 1.83985 1.38061 1.25411 1.58464 0.95459 0.88620 0.94495 0.94513 0.88683 0.95355 0.92668 0.86532 0.86528 0.89725 0.91306 0.89788 0.90487 0.89615 0.89828 0.83719 0.83808 0.78603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 7.77 37.16 0.29 -3.83 16 2 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 3 C -0.16 -4.09 7.78 37.16 0.29 -3.80 16 4 C -0.50 -13.33 8.01 -34.44 -0.28 -13.61 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.34 9.35 55.43 0.52 -23.83 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C -0.58 -11.72 5.12 37.16 0.19 -11.53 16 13 S 2.60 51.12 4.67 -107.50 -0.50 50.62 16 14 O -0.96 -21.18 14.90 -57.54 -0.86 -22.04 16 15 O -0.95 -20.67 13.63 -57.73 -0.79 -21.46 16 16 N -1.01 -15.21 3.33 -105.35 -0.35 -15.56 16 17 C 0.11 1.34 7.09 -2.26 -0.02 1.32 16 18 C -0.13 -1.17 7.12 -24.32 -0.17 -1.34 16 19 C -0.12 -1.10 6.47 -24.90 -0.16 -1.26 16 20 C 0.23 2.96 3.54 -68.11 -0.24 2.72 16 21 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 22 C -0.01 -0.14 4.21 -35.63 -0.15 -0.29 16 23 C -0.20 -2.80 10.80 -39.70 -0.43 -3.23 16 24 C -0.21 -2.80 10.91 -39.70 -0.43 -3.23 16 25 C -0.04 -0.58 12.09 29.42 0.36 -0.22 16 26 O -0.16 -2.62 10.59 5.69 0.06 -2.56 16 27 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 28 H 0.10 2.58 6.07 -51.93 -0.32 2.27 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 32 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 35 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 36 H 0.08 1.08 7.66 -51.93 -0.40 0.69 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.69 7.82 -51.93 -0.41 0.29 16 42 H 0.14 1.69 8.06 -52.48 -0.42 1.26 16 43 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.20 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -33.69 355.96 -9.12 -42.81 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.62 Total: 5.65 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -0.93 Total: -34.69 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.17 Total: -39.38 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.58 Total: -46.06 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 51.12 SS G_CDS: -0.50 Total: 50.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.69 -9.12 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332351499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.948 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds